| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,270,151 | 0 | A | C | 22.3% | 220.8 / 21.9 | 202 | intergenic (+549/+474) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| Reads supporting (aligned to +/- strand): ref base A (82/64); new base C (40/2); total (133/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.07e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 202 total aligned reads displayed.
CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAC > NC_000913/3270002‑3270300 | gccccattctttTGCGGATAGAGTCGTCGACATTGATTTATCTTTCTGCCCCTCCAAACGCAAAATCTCCGGC‑TTGAGTGTTTTTACGTATTGTTTTGTTCAGTTACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGtcatt < 5:1366840/145‑1 (MQ=2) ttctttTGGGTATAGTGTCGTGGACAGTGATTCATCTTTCGGCCCCTCCCAAAGCAAAAAC‑CCGCCGCAGCGGGGTTTTACGTAAACCAGGTGAAACTGCCCGATAAGCCGGGTTGTGTTGGGGAT‑AGCGTGGTGGGCAggcctgcaacgg > 2:685903/1‑140 (MQ=11) ccccgcccccccgcTGCCCCCCCAAACGCCAAACC‑CCCCCGAAGCGGGTTTTTACGTAAACCAGGGGAAACTGACCGCTATGTCGGTTGGTTCTGGCGATCCGCG‑CTGGGCGATTCAGTTCTCTTT‑CTGCCCCTCCAAAAGCAAAAACccg < 1:773228/138‑1 (MQ=2) cattcatCTTTCTGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCAAGTCATTCATATTA‑GAGCGCCTGCAAAAACAAAAACccgcc > 8:1569581/1‑151 (MQ=11) tcatCTTTCTGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCATTCAAAGTT‑GTGCCCCGTCAAAAGCAAAAACccgccgc > 3:213531/1‑149 (MQ=11) atataaatGCCCCTCAAAAAGCTAAAAC‑CCGCCGTATCGGTTTTTTACGTAAAGCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑c < 2:1005047/144‑1 (MQ=11) tttCTGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGGCCTTGATGCTT‑GTGCCCCGGCAAAACCAAAAAACCGCCG‑CAC‑Cggg > 5:100040/1‑151 (MQ=11) tGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGGCAGGCATTCATCGGT‑GTGCGCCGGCAACCGCAAAAACCCGCCG‑CAG‑Cgggggtt > 1:881642/1‑147 (MQ=11) tGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCATTCATCGGT‑GGGCGCCTGCAACCGCAAAAACCCGCCG‑CAG‑CGGGtgtt > 1:873916/1‑151 (MQ=11) tGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTTGGGTAT‑AGCGTCGTGGAAAGGCAATCAACCTT‑CGTCCCCGCCAAAAGCAAAAACCCGCCG‑AAG‑CGCGgttt > 2:425216/1‑151 (MQ=11) ccccTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGGCATTGATAATT‑CGGCCCCACCAAAACCAAAAACCCGCCG‑aacacggggttgt > 7:1621202/1‑140 (MQ=11) cAAAACCAAAAAC‑CCGCCGAACCGGGATTTTACGTACTCCCGGGCCAACTGACCGCTCCTCCGCGTTCGTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTaaa < 5:674880/151‑1 (MQ=11) aaaaGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGAAAGGCATTCATGTTT‑GATCACCAACAAAAACAAAAAACCCCCG‑AAG‑AGGGGGTTTaacgaaa > 4:354974/1‑144 (MQ=11) ccccacaaC‑CCGCCGAATCTTGTTTTTACGTAAACCCGCTGAAACTCACCGACCCCCCGCCTGCATTTGCGACG‑AGGGCCGTTGCCAGCCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAg < 1:1054978/145‑1 (MQ=2) gCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGAAAGTCAATCATAGTT‑GTGCACCTACAAAAACAAAAAACCGCCG‑AAG‑CGCGGTTTTACCTAAAtaacg > 4:1199717/1‑147 (MQ=11) cAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGGCACGGAGTGATGGGT‑GTGCGCCGCCAAAACCAAAAACCCGCCG‑CCG‑GGGGGTTTTTCGGTAATCAgcg > 2:1363481/1‑149 (MQ=2) ccacaC‑CAGCCGACGCCGGTTCATACGTACAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTg < 3:436625/147‑1 (MQ=11) acccctcgcacttcggTTCTTACGTAAACCAGGTGAAACTGACCGATAAGCCGATTTTTTTTTTTTTT‑ATCGTCGTGGACAGTCATTTATATTT‑CTTCGCATCCTATTTCAAAAAACGTCGG‑TAT‑TGGGTTTTTACGTAAATCAGGTGaaa < 6:1331156/137‑1 (MQ=2) aC‑CCGCCGAACCGGGTTTTTACGTAAAGCAGGTCACACTGCCCGAGACGCCCCACTCTTTCGGGTAC‑CGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAAc < 5:1542116/151‑1 (MQ=11) ccgccgCAGCGGGCTTTTACGTAAACCCCGTGAACCTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTg < 5:202931/151‑1 (MQ=255) ccgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGTGTAT‑AGCGTCGTGTCAAGTCATTCATAATT‑AAGCACCAACAAAAACAAAAACCCGCAT‑AAG‑AGCGGTAATAAGGAAATCAGGTGataat > 6:838866/1‑146 (MQ=2) cgccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCCTTCATCTTT‑CTGCCCCACCAAAAACAAAAAACCGCCG‑CAC‑CGCGTTTTTTCCTTAATCAGGGGAAAATg > 5:1212841/1‑150 (MQ=11) ccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGGCATTCATGGTT‑CTGCGCCGCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTGTTTACGTAAATCAGGTGAAACTGAcc > 2:139519/1‑151 (MQ=11) cgcaccGGTTTATTACGTAAATTATTTAAAACTGACCGATAAGCGTCTTTATTTTTTTTAT‑AGAGTCTTTTACAGTCATTGATGTTT‑TTGCGACTAAAAAATCAAAAACCCGCCG‑AAT‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCg < 7:1109012/146‑1 (MQ=255) cgcaccGGGTTATTACGTAAATCATGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGGCGTCGAGAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCg < 2:633063/146‑1 (MQ=11) cgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCATTAATATTT‑GTGCCCCCCCAAAACCAAAAAACCGCCG‑AAG‑CGGGGGTTTAACGAAAACAGGGGCAACTGAccc > 1:303267/1‑150 (MQ=11) gcatcGGGTTATTACGTACAACACTTAAAACTTACCGATAAGCGGCATTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATATTT‑CTGCCCCTCCACAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGa < 3:53538/147‑1 (MQ=11) gAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATATTT‑CTGCCCCAGCAAAACCAAAAAACCCCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGATACTTAccc > 3:294162/1‑149 (MQ=11) aGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGAAAGTCATTCATAATT‑GTGCACCAGCAAAAACAAAAACCCGCCG‑AAG‑ACGGGTTTTAAGTAAATCAGGTGAAACTGACCGAt > 6:195807/1‑150 (MQ=11) gggTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTAGTGGAGAGTCATTCATCGTT‑GGGCCCCAGCAAAAACAAAAACCCGCAT‑AAG‑AGGGTTGTTACGGAAATGAGGTGaaaattgcccattagc > 7:982967/1‑138 (MQ=11) gggTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGCTAT‑AGCGACGTGGCCACTGAAATAAAGTT‑AATCCCCACCAAAAGCAAAAAACCCCCC‑CAG‑CGGGTTTTTAAAGAAATCAGGTGGAACGGGCCGCTAAgg > 5:928562/1‑150 (MQ=2) ttttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGAAAGTCATTCAAGATT‑CTGCCCCTCCAAAACCAAAAACCCGCAG‑AAG‑CGGGGTTTTACGGAAATAACGTGCAACTTACCCATAAGCCggg > 2:838938/1‑151 (MQ=11) ttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGGCAGGCATTCAAGTTT‑ATTCCCCCGCAAAACCAAAAAACCGCCGCAGG‑CGGGTTTTAACG‑AAATGACGTGCAACTTCCCGATAATCCGGGtt > 2:1594551/1‑151 (MQ=9) ttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCATTCATATTT‑GTGCCCCTGCAAAAGCAAAAACCCGCCG‑CAG‑CGGGGTTTTACGGAAATCAGGTGAAACTTCCCGATAATCCGGGtt > 1:1323402/1‑151 (MQ=14) ttACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCAATCAAATTT‑GAGCACCTACAAAAACAAAAACCCGCCT‑CAG‑CGCGTTTTTACCTAAATGAGGTGAAACTGACCCATAATCCGGGtt > 4:1340165/1‑151 (MQ=14) tACGTACATCAGGTCAAACTGACCGATAAGCCTTTTTTTTTTTTTTTT‑ATCGTCGTGGACAGTGATTTATATTT‑ATTGGCATACTATTTCAATAAACGTCGG‑TAT‑TGGGTTTTTACGTAAATCAGGTTAAACTGACCGATa < 8:1211985/141‑1 (MQ=255) tACGTAAACCAGCTGAAACGGCCAGATACTCCGCTTTATTTTGGTGAT‑ATCGGGCTCGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGtt < 5:733834/150‑1 (MQ=14) gTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCAAGTCCTTCATAATT‑GAGCGCCACCAAAAACAAAAACCCGCCG‑CAG‑AAGGTTTGTACGTAAATCACGTGATAGTTCCCCATAATCCGGGTTCTGt > 7:1328017/1‑151 (MQ=9) tAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCAATCATCTTT‑CGGCCCCGCCAAAAGCAAAAACCCCCCG‑CAG‑CCGGTTTTTACGGAAATCAGGTGAAACATCCCGATAACCCGGGTTCAGtg > 2:132095/1‑150 (MQ=14) ccaccccgccccaaCTGACCGATAAGCCGCTATCTATTGGGTAT‑AGCGTCGTTGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGAAAAAACGCTCCG‑AAT‑CGTGTTTTTACGTAAAAGATTGGAAACTGACCGATAAGCCGGGTTCTGTc < 1:224775/139‑1 (MQ=11) aaaCCAGGTGAAACTGACCGATAAGCTTCTTTCTTTTGGGTAT‑AGCTTCGTGTACATTCATTCATCTTT‑CTGCCCCTCCAAAATCTAATATCTGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGATTCTGTc < 4:928836/150‑1 (MQ=14) aaCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGAAAGTCAATCATATTT‑AAGCACCAACAAAAACAAAAACCCGCCG‑AAGACGGGTTTTAAC‑TAAATCAGGTGAAAATTACCCATAATCCGGGttgagtatt > 8:353522/1‑144 (MQ=9) cAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGTGTAT‑AGCGTCGTGGAAAGTCAATCAAAATT‑ATGCACCAGCAAAAACAAAAACCCGCCG‑CAG‑CGCGGTGTTAAGTAAATCAGGAGCAACTTACCCATAATCCAGGTTCtttgggggc > 4:1114320/1‑143 (MQ=2) cAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCATTCATCTTT‑CTGCCCCTCCAAAACCAAAAACCCGCCG‑CAG‑CGGGGTTTTACCTAAATCACGTGCAAATGCCCGATAAGCCGGGTTCTGTCggggc > 3:1351119/1‑150 (MQ=14) aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCCTTCAACCTT‑CTGGCCCTACAAAAACAAAAAACCCCCC‑AAG‑GCGGGGTTTAAGTAAATAACCTGAAAATGACCCACAAGCCcgggtgagtcgagggg > 1:1490637/1‑138 (MQ=2) aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCAAGTCATTCATATTT‑ATGCCCCTACAAAAGCAAAAAACCGCCG‑AAG‑GGGGTTTTTACGT‑AATAAGGTGAAACTGACCGATAAGACGGGTTGTGTCGTggcc > 7:142445/1‑148 (MQ=14) aGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTCGAAAGTCAATCAAGTTT‑GAGCCGCAACAAAAACAAAAACCCGCCG‑AAG‑AGCGTGTTTAAGGAAATGAGGTGCAAATTACCCATAAACCGGGTTCTGTAGTCGAc > 8:204058/1‑151 (MQ=9) ttttttttaatgATAAGCCGATTACTTTTTTGTAT‑AGATTCTTGCACAGTCTTTCATTTTT‑CTTCGCTTTTAAGATCTTAAACCCGCCG‑TAT‑CGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 8:103142/139‑1 (MQ=255) tGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTAAACTTT‑ATGACCCTCCAAAAGCAAAAACCCCCCG‑AAG‑AGGGTTTTTACGGAAATAAGCAGAAACATACCCAAAATCCGGGTTCTGTCGtctgcacg > 4:215382/1‑144 (MQ=14) gAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGCCAGTCATTCAACTTT‑CGGCCCCGACAAAACCAAAAACCCCCCG‑AAG‑CCGCTTTTTACCTAAATCACGTGCAACTTCCCGATAAGCCCGGTTATGTCGCGGCCAgac > 1:24677/1‑149 (MQ=14) gAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATATTT‑CTGCACCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTAAGTAAATCAGGTTAAACTGCCCGATAAGCCGGGTTCTGGCGTGGCCCGtc > 1:1391045/1‑151 (MQ=14) aaaCTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAAACCGCCG‑AAG‑CCGGTTTTTACGTAAATCAGGTGAAACTGAGCCCTAAGCCGGGTTCTGTCGTGGCCAGtc > 8:853562/1‑150 (MQ=14) aatttaCCGATTAGCAGCTTTATTTTGTGTAT‑TTGGTAGAGTATATTCATTCATCTTT‑CTGATCCTATAAAATCTTAAACCCGCCG‑TAT‑CGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcat < 6:63076/146‑1 (MQ=255) aCTGACGGCTAAGCCGCTTTCTTTTTCTTAT‑AGGGTCTGGGATAGGCTTGCAGCTTTGCTTCCGAT‑CTAAAGTAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcatt < 8:623215/151‑1 (MQ=9) tcctatcttAAGCCGCTTTCTTTTGGGTAT‑AGTTTTTTTTACATTAATTCATCTTT‑CTTCCCCTACAAAATGAAAAACCCGCTT‑AAG‑CTTGTTTTTACGTAAATCAGGTTAAACTGACCGATTAGGCGGTTTCTGTCGTGGACAGtcatt < 7:1525596/142‑1 (MQ=9) tGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATAAGGTGAAACTGACCGATAAGCCCGGTTATGTCGTGGACAGtcattc > 5:1328056/1‑150 (MQ=255) gACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGGCAGTCATTCATCTTT‑ATGCCCCGCCAAAACCAAAAAACCCCCG‑AAC‑CGGGTTTTTAAGTAAATAACGTGAAAATGACCCATAAGCCGGGTTATGGGGTGGACAGgcaatca > 5:96961/1‑150 (MQ=14) gACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATATTT‑GTGCCCCACCAAAAGCAAAAACCCCCCG‑AAG‑AGGGTTTTTAAGTAAATCAAGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGCCactgaataat > 4:1502990/1‑142 (MQ=14) aCCGATAAGCCGCTTTCTTTTGGGTAT‑AGTGTCGTGGACAGTCATTCATGTTT‑ATGCCCCAACAAAAACAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAAACAGGTGGAACTGACCCATAAGCCGCGTTCTTTTGTGGagagagacgtcgc > 3:1000547/1‑142 (MQ=1) aCCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTAGTGGACAGTCATTAATc > 7:652241/1‑151 (MQ=255) cGATAAGCCGCTTTCTTTTGGGTAT‑AGTGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACACGCCG‑CAG‑CGGCGTTTTACGTAAAGCACGTGCAACTGACCGATAAGCCGGGTTCTTtggtggcaagagagggagcg > 1:517936/1‑136 (MQ=11) cGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCAATCATCTTT‑AAGCCCCTCCAAAAACAAAAACCCCCCC‑AAC‑CCCGTATTTAACTAAATAAGGTGAAAATGACCCCTAAACCGCGTTATGTCGTGGCCACtcaataaact > 8:518793/1‑143 (MQ=9) gATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTAATCTTT‑ATGCCCCTACAAAAGCAAAAAAACCCCG‑AAT‑CCGGTTTTTACGTAAATAAAGTGAAACGGACCGAAAACACCGGTTCTTTCCTGGACACtcattaaaca > 1:579885/1‑144 (MQ=9) ccctaGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGGAAAAACCCTCCG‑AAG‑CTGGTTTTTACGTAAATCAGGTGAAACTGACCGATAATCCGGGTTCTGTCGTGGACAGTCATTCATCTAg < 1:1089403/147‑1 (MQ=255) aTAAGCCGCTTTCTTTTGGGTAT‑AGTGTCGTGGACAGTCATTAATCTTT‑CAGCCCCAACAAAACCAAAAACCCGCCG‑AAG‑ACCGTTTTTACGTAAAACAAGTGAAAATCACCGATAATCCGGTTTATTTTGTGGAAAggctatatgaaagt > 8:1008234/1‑138 (MQ=0) tAAGCCGCTTTCTTTTGGGTAT‑AGTGTCGTGGACAGTCATTAATGTTT‑ATGCCCCGACAAAAGAAAAAAACCGCCG‑AAG‑CGGGTTTTTACGTAAAACAGGTGAAACTGACAGAAAAGCCGGGTTCTGTGGGGGAGAGtgtgttgttcgggg > 2:1521267/1‑138 (MQ=11) ccGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCAAGTTT‑CTGCCCCGCCAAAAGCAAAAAACCGCCG‑AAG‑CGGGGTTTTAGGTAAATCAGGTGAAACTGACCGATAACCCCGGTTCTGTCGTGGCCAGTCATTAATATAGGCCAGc > 1:1594091/1‑151 (MQ=17) cGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTAAATAATATTT‑AAGACACAACAAAACCAAAAAACCCCCC‑AAT‑CGCGTAATTAACAAAAAAACGTGAAACAAAACCATAAGCCGGGTTAAGTCGGTGAAAGTCAATAATCTAGGCCaac > 6:382099/1‑148 (MQ=255) gcgttctttTGGGTAT‑AGTGTCGTGGACATTTATTTATATTT‑CTTCGCCTACAAAAGAAAAATACCGATT‑TAG‑CGTGTTTTTACGTAAATAAGTTGATATTGAGATATTTTGGGTTTTGTGTCGTGGACAGTCATTCATCTAGGCCAGCaa < 7:1308506/148‑1 (MQ=9) gCTTTCTTTTGGGTAT‑AGCGTCGTGGCCACTCATTCATCTTT‑GTGCCCCAACAAAAACAAAAACCCCCCG‑AAG‑CGGGGTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTGTGTCGTGGCCAGTCATTAAACTAGGCCCGCa > 5:301994/1‑150 (MQ=17) gCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑CAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGGGGACAGTCATTAATCTAGGCCAGCa > 3:1275037/1‑150 (MQ=255) gCTTTCTTTTGGGTAT‑ACCGACCTGGACATGCATACTTCTTT‑CAGCACCTACATCAGCTAAAACGAGCGG‑AAG‑TCGGATTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCaa < 5:436126/151‑1 (MQ=18) ctttctttTGGGTAT‑AGCGTCGTGGCCAGTCATTCATCTTT‑ATGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGGTCTGTGGTGGACAGTGATTCATCTAGGCCCGCCAt > 2:1220893/1‑151 (MQ=17) ctttctttTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGGTTTTACGTAAATCAGGTGAAACTGGCCGATAAGCCGGGTTCTGTCGTGGACAGTGATTCATCTAGGCCAGCAAt > 7:1567692/1‑151 (MQ=255) ctttctttTGGGTAT‑AGCGTCGTGGACAGTCAATGATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCCCCG‑AAT‑CGGGTTTTTAAGTAAATCAGGTGAAACTGACCCATAACCCGGGTTCTGGGGTGGCCACTCATTCCTCTaccaccccaa > 4:263686/1‑141 (MQ=14) cgtgctgttGGGTAT‑AGCGTCGTTGACAGTCATTCATCTTT‑CAGCCCCTCCAACAGCAAAACGCCTGAG‑AAG‑CGTGTTTTTTCGTTAACCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 2:167124/144‑1 (MQ=18) tttctttTTTGTTT‑ATAGTCGTGGACATTCATTCATCTTT‑ATTCACATACAAAACCTAAATCCCTACG‑AAT‑CGGGTTTTTTCTTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 7:1370040/150‑1 (MQ=16) ttctttTGGGTAT‑AGCGTCGTGGGCAGGCATTAATATTT‑GTGCCCCGCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGGTTTTAAGTAAATCAGGTGAAAATGACCGATAAGCCGGGTTATGTGGTGGCCAGTCATTCATCTAGGCCCGCCAt > 4:703275/1‑149 (MQ=17) ttctttTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCg > 6:751241/1‑151 (MQ=255) ttctttTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTAACTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGCCAGTGATTCATCTAGGCCAGCAATCg > 6:72235/1‑151 (MQ=255) ttctttTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAACCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAACCTGACCTATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATc < 2:313201/150‑1 (MQ=255) ctttTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑GTGCCCCTCCAAAAGCAAAAAACCGCCG‑CAG‑CGGGTTTTTACGTAAATCAGGTGAAAATGACCGATAAGCCGGGTTGTGTCGTGGACAGTCATTCATCTAGGCCACCAATAGCt > 3:1151424/1‑151 (MQ=18) tttttctat‑aGTGGCGTCGACATTTATTTATATTT‑CTGTCTCTCGATAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc < 8:268490/144‑1 (MQ=18) tttGGGTAT‑AGTGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGGAATAACCGGCCG‑AAG‑CGGGTTTTTACTTAAATCAGGTGAAACTGACCGATAAGGCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc < 1:831047/150‑1 (MQ=18) ggTAT‑AGCGTCGTGGACAGTCATTAATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑AGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTGGTGGACAGTGATTAATCAAGGCCCCCAAACGCTCACTgg > 8:1115258/1‑151 (MQ=17) catactctcttGGACAGTCATTCATCTTT‑CTGCCACTACAAAATTAAAAACCCTCCG‑AAG‑AGTGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGc < 7:995568/140‑1 (MQ=21) t‑aGCGTCGTGGACAGTGATTAATATTT‑GTGCCCCTCCAAAAGCAAAAAACCGCCC‑AAG‑CCGGTTTTTAAGTAAATAACGTGAAACTGACCGAAAAGCCGGGTTCTGTCGTGGAAAGTCATTCAAATAGGCCAGCAATCGCTAACAGGCta > 6:1205437/1‑149 (MQ=18) aGCGTCGTGGACAGTCATTAATATTT‑CTGCCCCTACAAAAGCAAAAAACCCCCG‑AAG‑CGGGTTTTTAAGTAAATCACGTGAAAATGACCGATAAGCCGGGTTATGTCGTGGAAAGTCATTAATATAGGCCAGCAATCGCTCACTGGCGCa > 4:880761/1‑150 (MQ=255) tgtcgtGGACAGTCATTCATCTTT‑ATTTTTTTATAAAAGGTATAACCCGCAG‑ATG‑TTGTTTTTTAGGTAAATTATGTGAATCTGAGAGTTTATTCGGTTTTTGTCGTGGACAGTCATTCATCTAGGCCAGCAATc < 7:1084166/134‑1 (MQ=255) ttcttGGACATTCATTCATCTTT‑CTGACCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CTGTTTTTTACGTAAATCAGTTGAATCTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagc < 4:1287040/146‑1 (MQ=25) gtcgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGCCAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCGCAagcc > 7:964210/1‑150 (MQ=255) gtcgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagc > 2:539356/1‑150 (MQ=255) gtcgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTAAGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagc > 3:1508165/1‑150 (MQ=255) gtcgtGGACAGTCATTCATCTTT‑CTGCCCCACCAAAAGCAAACACCGGCCG‑AAG‑CGGGTTTTTACGTAACTCAGGTTAACCTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagca < 3:1455748/151‑1 (MQ=25) cgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑GTGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagcagc < 3:782187/151‑1 (MQ=255) cgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagcagc > 3:1591936/1‑151 (MQ=255) cgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagcagc > 7:499634/1‑151 (MQ=255) cgtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAagcagc > 7:1284588/1‑151 (MQ=255) gtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGcc > 7:695818/1‑151 (MQ=255) gtGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGcc > 1:1190408/1‑151 (MQ=255) | CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAC‑CCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTAT‑AGCGTCGTGGACAGTCATTCATCTTT‑CTGCCCCTCCAAAAGCAAAAACCCGCCG‑AAG‑CGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGGCTCAAGCAGCCTAC > NC_000913/3270002‑3270300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |