Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,269,9940GT25.7% 287.4 / 20.8 205intergenic (+392/+631)yhaC/garKpentapetide repeats‑related protein/glycerate kinase I
Reads supporting (aligned to +/- strand):  ref base G (22/108);  new base T (0/45);  total (23/182)
Fisher's exact test for biased strand distribution p-value = 1.26e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 208 total aligned reads displayed.

GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTT  >  NC_000913/3269845‑3270134
                                                                                                                                                     |                                                                                                                                            
gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTg                                                                                                                                              <  7:908963/150‑1 (MQ=255)
 aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTTGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa                                                                                                                                            <  5:354006/151‑1 (MQ=255)
 aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa                                                                                                                                            <  5:439671/151‑1 (MQ=255)
 aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa                                                                                                                                            <  1:1256893/151‑1 (MQ=255)
   aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc                                                                                                                                          <  7:239334/151‑1 (MQ=255)
   aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc                                                                                                                                          <  2:1765483/151‑1 (MQ=255)
    cccGCCGTAACGGGTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa                                                                                                                                           <  7:1207295/149‑1 (MQ=255)
    cccGCCGGAACTGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAATATTTCAGCCCCACCAAAACAAAAAACCCGCCGAAGCCGGTTTTTACGTAAAACAGGAGaaa                                                                                                                                           >  2:1431761/1‑149 (MQ=17)
    cccGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt                                                                                                                                         <  6:898494/151‑1 (MQ=255)
     ccgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTg                                                                                                                                        <  6:1863185/151‑1 (MQ=255)
      cgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa                                                                                                                                       <  3:585552/151‑1 (MQ=255)
        ccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGAAAAAAACCGCCGCAGCGGGTTTTTACGTAAACCAGGTGAAACTGagc                                                                                                                                     >  7:319826/1‑149 (MQ=14)
        caggAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc                                                                                                                                     <  4:70906/149‑1 (MQ=255)
           gAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt                                                                                                                                  <  5:1104592/151‑1 (MQ=255)
            aaCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa                                                                                                                                 <  7:1431269/151‑1 (MQ=255)
            aaCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa                                                                                                                                 <  5:1490803/151‑1 (MQ=255)
            aaCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa                                                                                                                                 <  3:257752/151‑1 (MQ=255)
             gcgttgttttaTGTATATGATGTCAAAGTGCCCGATAACGCGCTTTATTTTGGTGATTCTGTCGTGGACAGTCATTCATCTATCTGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa                                                                                                                                <  7:367318/143‑1 (MQ=11)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                <  1:1043143/151‑1 (MQ=255)
             aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa                                                                                                                                <  2:645988/151‑1 (MQ=255)
              cGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg                                                                                                                               <  1:1758969/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                              <  2:375561/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                              <  3:1660970/151‑1 (MQ=255)
               ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                              <  3:741764/151‑1 (MQ=255)
                gTTTATTACGTACATCATGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGGATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTAAAACTGACCGATAAGcc                                                                                                                             <  4:1043486/151‑1 (MQ=255)
                 tttATTACGTACATCAGTTAAAACTGTCCGATAAGCCGCTTTCTTTTGTGTTTAGTGTCGTGGAAAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGcc                                                                                                                             <  4:1210860/150‑1 (MQ=14)
                   tattaCTTACATCAGTTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                                                                                                                           <  4:1062687/150‑1 (MQ=255)
                   tattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc                                                                                                                           <  3:1180981/150‑1 (MQ=255)
                    attaCGTACATCAGTTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt                                                                                                                         <  4:1452399/151‑1 (MQ=255)
                      taCTTAGATCAGTTAACACTTACCGATAATCCGCTTTCTTTTTTTTATAGTGTCGTGGACAGTCTTTCATATTTATGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGcttt                                                                                                                        <  4:394273/150‑1 (MQ=11)
                      taCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGcttt                                                                                                                        <  3:245992/150‑1 (MQ=40)
                       aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGGGGACAGGCCTTCATCTTTCTGCCCCTCAAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttc                                                                                                                       <  7:1310906/150‑1 (MQ=255)
                        cGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt                                                                                                                     <  3:440019/151‑1 (MQ=40)
                        cGTACATCACGTAAAACTGACCGTTAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTGATTCTTCTTTCTGGCCCTCCAAAAGTACAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttctt                                                                                                                     <  6:1399958/151‑1 (MQ=14)
                        cGTACAGCAGGTAAAACTGAACGATAAGCCGCTTTCTTTTGGGTATATTGTCGTGGACAGTCAGTGATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttctt                                                                                                                     <  6:1595472/151‑1 (MQ=14)
                         ggagaTCAGGTAAAACTGACCGATCAGCTGCTTTCATTTGGCTATAGTGTCGTGGACTGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt                                                                                                                    <  4:1095570/147‑1 (MQ=11)
                         gTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGTTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt                                                                                                                    <  1:1110412/151‑1 (MQ=255)
                           aCATCATGTAAAACTGACCGATAAGCCGCTTTCTGTTGTTTCTAGTCTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg                                                                                                                  <  2:663038/151‑1 (MQ=14)
                           aCATCAGTTAATACTTACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCTTCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCtttt                                                                                                                   <  2:1203749/150‑1 (MQ=255)
                           aCATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                              <  5:1188300/139‑1 (MQ=40)
                           aCATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGc                                                                                                                              >  8:1189182/1‑139 (MQ=255)
                            catcatGTATTACTGACCGATAAGGCGCTTTCTTTTGGGTATTGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGCATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg                                                                                                                 <  6:819557/151‑1 (MQ=11)
                            aaTCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGCCAGTCCTTCATCTTTGTGACCCTCCAAAAGCAAAAAACCGCCGAAGCGGGTTTTTACGTAAAAAACCTCAAACAGCCCGATTAACCGcattcacatgg                                                                                                                 >  3:1728420/2‑145 (MQ=11)
                              aaacgtaacaattaCCGATCAGCCGCTTGCTTGTGCCGAGCGTGTCGTCGACAGGCCATCCTCTTTCTGCCACTCAAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGt                                                                                                               <  8:329479/138‑1 (MQ=2)
                               aacgTAAAACTGACCGATAAGCCGCTTTCATTTGCGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGta                                                                                                              <  1:1844537/148‑1 (MQ=255)
                                  gTAACACTGCCCGATAAGCCGCTTTCTTTTGGGTATAGTGCCGTGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTACACACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata                                                                                                            <  7:860665/150‑1 (MQ=11)
                                  gTAACACTGACCGATAAGCCGTTGTCTTTTGGTTATAGTGTCGTGGACAGTGATTCATCTTTCTGCCACTCCAAAAGTAAAAACCCGCCGAAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata                                                                                                            <  2:912266/150‑1 (MQ=11)
                                    aaaaCTGAGCGATAAGCGGCTTTCTTTTGGGGATAGTGTCGTGGACAGGCATTCATCTTTCTGCCCCTCCAAAAGTTAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt                                                                                                          <  5:535424/150‑1 (MQ=11)
                                     taaCTTAGCGTTATGCCGTATTCTTTTGTCTATTTTCTCGTGGACAGTGCTTGCTATATCTGCCACTCCAAAATTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtg                                                                                                         <  7:617654/149‑1 (MQ=2)
                                     aaaCTTAGCGATAAGCCGGTTTCTTTTGGGTATAGTGTCGTGGACAGTGATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtgt                                                                                                        <  6:1056471/151‑1 (MQ=255)
                                           aCCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATATTTGGGCCCCAGCAAAAAAAAAAACCCGCCGAATACGGTTTTTACGTAAAACACGTGAAAATGCGCGCAAAGCCCCTTTCTGGTggggacacggatgtgt                                                                                                   >  5:20350/1‑137 (MQ=2)
                                            ccGATAAGCCGGTTTCTTTTTCGTATAGTGTCGTGGACAGCGTATGCTCTTTCTGCCACTCCAAAAGGAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAc                                                                                                 <  3:1000505/151‑1 (MQ=11)
                                             cGATAAGCCGCATTCTTTTGGGTATATTGTCGTGGACAGTCATTCATCTATCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACa                                                                                                <  5:688338/151‑1 (MQ=255)
                                              gatttgtcggttgctttTGTTTATAGTGTCGTGGACAGTGTTTCTTCTTTCTGGCCCTCCAAAAGTAAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAg                                                                                               <  4:669986/138‑1 (MQ=11)
                                                tAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGGCACTCATTGAACTTTATGCCCCGCCAAAACAAAAAACCCCCCCCAGCGGGGTTTTAAGTAAAACACGTGAAACTGCCCGATAAGCCGCGTTCTGTAGGTTATAggtcgagcacacgtg                                                                                             >  1:148886/1‑137 (MQ=2)
                                                 cagcagatttctttATGCTAGAGTGTCGTCGAATCTCCTACATCTTTCTGCCACTCCAAAATTATAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtc                                                                                             <  4:1287727/143‑1 (MQ=11)
                                                     ggCTTTCTTTTGAGTCTAGTGTCGGGGACAGTGATTGATCTTTCGGGCCCTCCAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattca                                                                                        <  3:1040996/150‑1 (MQ=11)
                                                     cGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCTTTCATATTTCTCCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGtcattca                                                                                        <  3:1694479/151‑1 (MQ=255)
                                                      gCTTTCTTTTGGGTATAGTGTCGTGGGCACTCAATAATCTTTATGCCCCGCCAAAACAAAAAAACCCCCCCACCCGGGTTTTAAGTAAAAAACCTGCAAAAGACCGCGAAACCCCTTAGGTTTGGGTATAGTTTCGTGGGCAgggtgttat                                                                                       >  3:1356657/1‑143 (MQ=2)
                                                          tctttTGGGTATAGTGTCGTGGCCAGTGATTCATGTTTCTGCCCCTCCAAAAGTAAAAAACCGCCGAAGCGGGGTTTTTCGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTGTTTGGGGTGTTGGGTAGTGGCCacgtctgtactgc                                                                                    >  5:1416063/1‑138 (MQ=11)
                                                             tttGGGCATAGTGGCGTCGACAGTCATTCATCTTTTTTAAAATCAAACAGCAAAAACCGTGAGATTCTGTTTTTTTCTTAATATTTCTGAAAATGACGGTTTTGCGTTTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTc                                                                                  <  6:537861/149‑1 (MQ=2)
                                                              tattttagaGTGTCGTCGACAGGGTTTCATATTTCTGCCACTCCAAAATTAAAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTg                                                                                <  1:408988/142‑1 (MQ=11)
                                                                    ataGTCTCGCCGCCAGTCTGTCATCTTTCTCGCACTCCACAAGCTAAAACCCGCCGCACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTcc                                                                         <  5:912676/151‑1 (MQ=11)
                                                                           cGTGGACAGTCAATCATCTTTCTGCCACTCAAAAAGTACAAACCCGCCGCATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaaa                                                                     <  3:675570/148‑1 (MQ=11)
                                                                                  acggtatactatatctcCCACTCAAAAAGTATAAACCCGCCGAACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAccc                                                           <  3:635215/138‑1 (MQ=11)
                                                                                   gttaatcatCTTTCGGCCCCTCAACAAGTAAATAGAGTACGTACCGGGTTTTTACGTATATCAGGTGAAACTTAGCGATAAGCAGCTTTCTTTTGTGTATAGTGTCGTTGACAGTCATTCATCTTTCTGCCGCTGCAAATGCAAAAACccg                                                          <  6:1533115/146‑1 (MQ=2)
                                                                                    tcattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACAGTCATTCATCATAAAGCCCCACCAAAATCaaaaaacagc                                                         >  6:471244/1‑146 (MQ=11)
                                                                                     gttatttatttCTGCCACTCAACAATTTTAAACCCGCCGTATCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAcc                                                            <  6:1789312/139‑1 (MQ=11)
                                                                                        acctatatCTGCCACTCAAAAAGTAAAAACCCGCCGTATCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa                                                     <  4:1691287/144‑1 (MQ=11)
                                                                                          ttatttatcgcacTCAAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAg                                                    <  8:194511/138‑1 (MQ=11)
                                                                                            atttCTGGCACTCAAAAATTATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCgg                                                 <  6:1107146/150‑1 (MQ=11)
                                                                                               actcccacTCCACAAGCACAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGt                                               <  5:650190/143‑1 (MQ=11)
                                                                                                    cccTCAAAAATTTAAAACCCGCCGAAGCGGTTTTTTACGTATATCAGGTCAAAATGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCATTCATCTTTCTGCCCCTCCAAAAGGAAAAACCCGCCGAAGCGGGTTTTTAc                                         <  4:1400493/151‑1 (MQ=11)
                                                                                                     ccTCCACAATTTAAAACCCGCCGTACCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg                                        <  6:1515365/151‑1 (MQ=11)
                                                                                                     ccTCCACAAGCACAAACCCGCCGCACCGGGTTATTACGTACAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg                                        <  1:1299909/151‑1 (MQ=11)
                                                                                                       gccAAAAGGACAAACCCGCCGAACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                      <  5:40768/150‑1 (MQ=255)
                                                                                                        gctattggtatctcccGCCGTATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                       <  8:1483121/136‑1 (MQ=11)
                                                                                                        ccACAATTACAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTa                                      <  4:777679/150‑1 (MQ=11)
                                                                                                        ccAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt                                       <  6:275508/149‑1 (MQ=14)
                                                                                                          aaaatgaaaaaCCCGCCGCATCGGTTTATTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTCGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                   <  5:1160789/145‑1 (MQ=11)
                                                                                                          aaaaGTAAAAACACGTCGAAGCTGGTTTTTACGTTAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc                                   <  6:1360228/151‑1 (MQ=255)
                                                                                                            aatcttaaaCCCGCCGCATCTGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa                                 <  4:1353394/145‑1 (MQ=11)
                                                                                                            aaGTAAAAACCCGCCGAAGCGTCTTTTTACGTAAAACAGGTGAAACTGACAGATAAGAAGATTTCATTTGGGTATAGTGTCGTTGAAAAAAAAAAAAATTTATGCCCCGCCAAAAGCAAAAACCCGCCGAAGGGGGGGTTTagggtggggg                                 >  6:616445/1‑142 (MQ=2)
                                                                                                               caaaaaCCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt                              <  1:1710800/150‑1 (MQ=25)
                                                                                                                aaaaaCCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGGCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTg                             <  5:1748949/151‑1 (MQ=25)
                                                                                                                 aaaaCCCGCCGCATCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGa                            <  3:152412/151‑1 (MQ=255)
                                                                                                                  aaaCCCGCCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa                           <  8:1260386/151‑1 (MQ=255)
                                                                                                                   aaCCCGCCGCACCGGGTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaaa                          <  7:1024254/151‑1 (MQ=255)
                                                                                                                     cccGCCGTATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt                        <  6:735692/151‑1 (MQ=16)
                                                                                                                     cccGCCGCAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt                        <  5:451242/151‑1 (MQ=25)
                                                                                                                     cccGCCGAACCGGTTTATTACGTAAAACAGGTCAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACt                        <  3:123047/151‑1 (MQ=255)
                                                                                                                      ccgccgTATCGGGTTATTACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg                       <  7:1459640/151‑1 (MQ=255)
                                                                                                                           ggcgCGGGTTTTTACGTAAATCAGGTCAAACTTAGCGATATGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGGCATTCATCTTTCTGCCCCTGCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa                  <  8:1757511/148‑1 (MQ=11)
                                                                                                                           gAATCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGa                  <  2:1077563/151‑1 (MQ=25)
                                                                                                                             tgCGGTTTTTTTCTTATATCATGTTAAACTGACCGATATGCTGCTTTCTTTTTTGTATATTGTCGTGGTCAGTGTTTTATCTTTCTGCCCCTCAAAAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGAt                 <  4:100906/149‑1 (MQ=11)
                                                                                                                             aacGGGTTTTTACGTAAATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATa                <  5:1573386/149‑1 (MQ=18)
                                                                                                                               cgttttattACGTAAAACAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg              <  1:1351279/144‑1 (MQ=255)
                                                                                                                               cGGTTTTTTACGTAAAACAGTTTAAACTGAGCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa               <  7:1620326/150‑1 (MQ=255)
                                                                                                                                 tttttttACGTAAATCAGGTTAAACTTACCGATAAGCCTCTTTCTTTTGGTTATAGTGTCGTTTACAGTCATTCATCTTTCTGCCCCTCAAAAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa               <  2:847990/146‑1 (MQ=11)
                                                                                                                                         cGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCAATAAAATTTCTGCCCCTCCAAAAGCAAAAACCCCCCCAATCGGGAGATAAGATAAACGAGGTGAAGCTCAACGAAAAGccacaaacat    >  2:462332/1‑143 (MQ=2)
                                                                                                                                                     |                                                                                                                                            
GAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTT  >  NC_000913/3269845‑3270134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑