Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,392,4570GT28.2% 356.8 / 29.4 259intergenic (+22/‑15)glyV/glyXtRNA‑Gly/tRNA‑Gly
Reads supporting (aligned to +/- strand):  ref base G (49/101);  new base T (7/52);  total (58/201)
Fisher's exact test for biased strand distribution p-value = 1.80e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 261 total aligned reads displayed.

CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAG  >  NC_000913/4392309‑4392604
                                                                                                                                                    |                                                                                                                                                   
cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg                                                                                                                                                     <  2:1720241/149‑1 (MQ=255)
cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc                                                                                                                                                    <  5:615387/150‑1 (MQ=255)
 ccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTCATTCAAAGca                                                                                                                                                   >  6:1471759/1‑150 (MQ=255)
   gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAg                                                                                                                                                <  2:472790/151‑1 (MQ=255)
   gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAg                                                                                                                                                <  6:499490/151‑1 (MQ=255)
      acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAATTAGTGCAAAAGACAGtcc                                                                                                                                             >  1:1765361/1‑151 (MQ=21)
       cgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAATTGAAAACTGCTGCAACGCACAGcccc                                                                                                                                            >  3:884690/1‑150 (MQ=255)
        gacgCAGAAATGCGAAAATTACGAAACCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGCTCGGGGTCGCGAGATCGAGTCTCCTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGaccac                                                                                                                                           <  7:1474979/151‑1 (MQ=255)
            cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAATTGCTGCCAAGCCCAGACCACCCa                                                                                                                                        >  2:610678/1‑150 (MQ=255)
            cAGAAATGCGAAAATTACGAAAGCAAAATTAAGCAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCaa                                                                                                                                       <  3:1626920/151‑1 (MQ=255)
               aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg                                                                                                                                    <  3:1545472/151‑1 (MQ=255)
               aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCg                                                                                                                                    <  4:865621/151‑1 (MQ=255)
                 aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCggg                                                                                                                                  <  4:313562/151‑1 (MQ=255)
                   gCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGaa                                                                                                                                <  5:1401486/151‑1 (MQ=255)
                    cGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAAt                                                                                                                               <  2:638571/151‑1 (MQ=255)
                     gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAATTGCTGAAAAGCACAGACAACCCAAGCGGGAAt                                                                                                                               >  7:226342/1‑150 (MQ=255)
                      aaaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAg                                                                                                                             <  5:395246/151‑1 (MQ=255)
                        aaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCGCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCt                                                                                                                           <  8:1322428/151‑1 (MQ=255)
                         aTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTc                                                                                                                          <  1:1254208/151‑1 (MQ=255)
                           tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCa                                                                                                                         <  3:762983/150‑1 (MQ=255)
                             cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGtt                                                                                                                      <  5:1313432/151‑1 (MQ=255)
                              gAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTg                                                                                                                     <  1:1242524/151‑1 (MQ=255)
                               aaaGCAACATGAAGTAGTACTCGGGAATAGCTCAGTTGGTACAGCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACATACCACCCAAGCGGGAATAGCTCAGTTgg                                                                                                                    <  7:1447120/151‑1 (MQ=17)
                                   cAAATTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGTGCAGGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTaga                                                                                                                <  4:1800592/151‑1 (MQ=255)
                                   cAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGGACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACGCAAGCGGGAATAGCTCAGTTGGTaga                                                                                                                <  6:815573/151‑1 (MQ=255)
                                    aaaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTagag                                                                                                               <  2:27870/151‑1 (MQ=255)
                                    aaaaTTAAGTAGTAAGCGGGAATAGCTCAGTTTTTAGAGCAGGAGCTTGCGAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTTCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTagag                                                                                                               <  6:733839/151‑1 (MQ=14)
                                          aaGTAGTACTCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAc                                                                                                         <  3:109900/151‑1 (MQ=255)
                                            gtagtaCGCGGGAATAGCTGATTTGGTAGAGCACGACCTTTACAAGTTCGGGGTCGCGATTTCGAGTCTCTTTTCCCTCTCGAAAATTTGAAAAGTGCTGCATAGCACAGACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCt                                                                                                       <  2:1485995/151‑1 (MQ=14)
                                              cgtaCGCTGGCATAGCTCAGTTGGTAGCGGACGACCTTCCCCAGGGAGGGGTCGCGAGTTCGTGGCTCGTTTACCGCTCCTAAATTTGAAAAGTGCGGAAAAGCACATACCTCCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCtt                                                                                                      <  1:731120/149‑1 (MQ=14)
                                              attaCGCGGGAATAGATCAGTTTGTAGTGGACTTCCTTGGCTAGGTCGGGGTCGCTAGTTCGAGTCTCGTTTCCGCCTCCAAAATTTGAAAATTTCTGCATATCACAGACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCtt                                                                                                      <  8:97465/148‑1 (MQ=14)
                                                 aaccgcgAATATCTCAGTTGGTAGAGCACGACCTTGCCTACTGCTTGGTCGCGAGTTGGAGTCTCGTTACCCGCTCCAAAATTTGAAAAGTTCTGCAAAGCACTGACCTCCAAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGcc                                                                                                   <  3:1012760/144‑1 (MQ=14)
                                                      ggAATACCTCAGTTGTTAGAGCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAACTCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTc                                                                                             <  5:1690167/151‑1 (MQ=11)
                                                            ccTCAGTTGGTAGCGCAGGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc                                                                                       <  4:24063/150‑1 (MQ=255)
                                                             atCAGTTGTTAGAGCAGGACCTTGGCAAGTTCGGGGTCGAGAGTTGGAGTCTCGTTTCCCTCTGCTAAATTTGAAAATTGCTGAAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc                                                                                       <  6:1627642/149‑1 (MQ=11)
                                                               cAGTTCGTAGAGCACGACCTTGCCCAGGTCGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCTCAAAAATTTGAAAAGTTCTGCACACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgcg                                                                                    <  3:1768910/151‑1 (MQ=14)
                                                                aGTTGGTAGAGCACGACCTTGCCAACGGCGGGGTCGCGAGTTCGACTCTCGTTTCCCGCTCAAAAATTTGAAAAGTGCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa                                                                                   <  3:94845/151‑1 (MQ=255)
                                                                aGTTGGTAGAGCACGACCTTCCCCAGCTCGGTGTCGCGAGTTCGAGTCGCGTTTCCCCCTCCAAAATTTGAAAAGTGCTGCAACGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa                                                                                   <  8:1509429/151‑1 (MQ=11)
                                                                       agagCTCGAGCTTCCGTAGCTCGTGGTCGCTTTTTCCTGTCTCCTTTCCGCCTCCTAAATTTGAAAATTCCTCAAAACAACAGAACACCCAAGCGGGAATAGCTCAGTTGGGAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa                                                                             <  1:1164564/150‑1 (MQ=2)
                                                                          gCACGACCTTGGCAAGGTCTGTGTCGCTATATCGCGTCTCGTTTCCCCCTCCTAAATTTGAAAATTGCTGCAACCCACATACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                                         <  6:1042407/151‑1 (MQ=11)
                                                                          gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCCAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct                                                                         <  8:1141544/151‑1 (MQ=255)
                                                                           gaCGAGCTTGCCTATGGCGGGGTCGCGAGTTCGCGGCTCGTTTCCCTCTCCAAAATTTGAAAAGTGCTCCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc                                                                        <  5:108154/150‑1 (MQ=14)
                                                                            aCGACCTTGCGAAGGTAGGGGTCGCGACTTCGAGTCTCGTTTCCCTCTCCAAAATTTGAAAAGTCCGGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg                                                                       <  1:1068155/151‑1 (MQ=14)
                                                                              gagcTTGCCAAGGGCGGGGTCGCGAGATCGAGGCGCGTTTCCCGCTCCAAAATTAGAAAAGTGCTGCACACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt                                                                     <  3:1273668/148‑1 (MQ=14)
                                                                               aCCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGttt                                                                    <  4:1296300/151‑1 (MQ=255)
                                                                                ccTTGCGAAGGGCGGTGTCGAGAGTTCGCGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTTCAAAGAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTc                                                                   <  1:676965/151‑1 (MQ=14)
                                                                                   ttcctagttcttggTCGCTATTTCGCGTCTCGTTTACCTCTCAAAAATTTGAAAAGTTCTTCAAATAACAGACCAAGAAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTccc                                                                 <  6:259/138‑1 (MQ=14)
                                                                                   tggcAAGGGCGTGGTCGCGAGTTCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTCCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTcc                                                                  <  2:1258084/146‑1 (MQ=14)
                                                                                   tGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTcc                                                                  <  2:1582561/149‑1 (MQ=38)
                                                                                    gcgaaGTTCGGGGTCTAGAGTTATAGTATCTGTTCCCGCTTCAAATTTTCTAATGCGATCTATATCAAAGACGTACTAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGc                                                               <  6:1178870/148‑1 (MQ=2)
                                                                                     ccAAGCTCGGTGTCGCGAGATCGAGGCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCGCCAAAGAACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCt                                                              <  7:547499/151‑1 (MQ=14)
                                                                                         ggTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTGAAAACAGTATAATATCACAGCCCACCCAAGCGGGTATTGCTGGGTTGGTAGCGCACTACCTACCGAATGTAGGGGTAGCGAGGCCGAGCCTCGttacgacctcat                                                           >  3:325930/1‑140 (MQ=2)
                                                                                          ggcGGGGTCGCGAGTTCGCGTCTCGTTTCCCTCTCAAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCACCaaa                                                         <  8:785011/149‑1 (MQ=14)
                                                                                            ttgggTAGCTAGTTGGACTTTCGTTTCCGTCTCATAAATTTGAAAATTTCTTAATATAAAATAACTCGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCaaaa                                                        <  5:882992/148‑1 (MQ=2)
                                                                                            atttgtcgatttttggAGTCTCGTTTCCGTCTCAAAAATTTGAAAAGTTCTTCATAGAACATAACAACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAt                                                       <  5:496519/136‑1 (MQ=14)
                                                                                               gctCGCTAGTTGGAGGCGCGGTTCCCCCTCCAAAATTTGAAAATTGCGCCAAAGCACTGACCACCGACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAttt                                                     <  2:1653985/148‑1 (MQ=14)
                                                                                                gtcgctaattgctcgctcGTTAACCGCTCAAAAATTAGAAAAGTTCTAAATACAAAAGAACTCCGACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGa                                                   <  8:1636397/136‑1 (MQ=2)
                                                                                                gTCGCGATTTCGAGGGGCGTTTACCGCTCCAAAATTTGAAAATTGCTCCAAAGCACTGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTg                                                    <  3:414381/150‑1 (MQ=14)
                                                                                                   gatatttCGAGTATCGTTTCCCTCTCTAAAATTTGAAAATTCCTTCAAAACACTTAACAACCAAGCGGGAATAGCTAAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAg                                                <  4:648684/146‑1 (MQ=14)
                                                                                                    cgAGTTCGCGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTCCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt                                               <  7:1020301/151‑1 (MQ=255)
                                                                                                    cgAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGAAAAGCACAGCCCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTACCGCGCCAAAATTTGAAAGt                                               >  4:1329217/1‑151 (MQ=255)
                                                                                                     gtgtgcgcgTCTCGTGTCCCACTCATAAATTGGAAAAGTCCTACAACCCAATGACCACCGACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTg                                              <  7:1767591/143‑1 (MQ=14)
                                                                                                      acctccagcctcGTTTCCCCCTCCAAAATTTGAAAAGTTCTGCAAATCACAGACCAACCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGt                                               <  1:989532/140‑1 (MQ=14)
                                                                                                          cgcggcgcGTTACCGGCTCCCAAATTTGAAAATTGCGCCACCGAACAGACGACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTa                                         <  7:438724/144‑1 (MQ=17)
                                                                                                             gttgcGTTTCCGTCTCATAAATTTGAAAATTCCTTAATATCACAGAAGTCCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAgg                                      <  5:1436765/147‑1 (MQ=14)
                                                                                                             gTCTCGTTTCCCTCTCCTAAATTTGAAAAGTTCTTCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAgg                                      <  5:325343/151‑1 (MQ=255)
                                                                                                              gctcGTTTCCCTCTCAAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGc                                     <  8:1580763/150‑1 (MQ=255)
                                                                                                              gctcGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGc                                     <  2:896884/150‑1 (MQ=255)
                                                                                                                tcGTTTCCCGCTCCAAAATTTGAAAAGTGCTGAAAAGCACAGCCCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTCCCAACGTCGGGGTCGCGAGTGCGAGTCTCGTTTCCCGCTCCAAATTTTGaacttgaaaaaatgcac                                   >  2:823653/1‑136 (MQ=11)
                                                                                                                 gctttacctctcataaaTTTGAAAATTCCTCCACCTCACAGACCAACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcaca                                  <  3:1043530/137‑1 (MQ=17)
                                                                                                                 cGTTTCCCGCTCCAAAATTGGAAAAGTGCTGCACAACACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGca                                    <  7:1504937/149‑1 (MQ=255)
                                                                                                                  gTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGCCCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTGAAAGAGCttaaatcgccac                                 >  7:1138635/1‑140 (MQ=14)
                                                                                                                    taccccCTCAAAAATTAGAAAAGTCCGTCAAACAACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAg                                 <  7:31746/147‑1 (MQ=17)
                                                                                                                     tCCCTCTCAAAAATTTGAAAAGTTCTGAAAAGCAAATAACACCGAAGCGGGAATAGCTGAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGac                               <  2:223029/150‑1 (MQ=17)
                                                                                                                     tCCCGCTCCAAAATTTGAAAAGTGCTGCACACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGac                               <  8:230965/150‑1 (MQ=255)
                                                                                                                      cccGCTCCAAAATTTGAAAAGTTCTCAAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacc                              <  4:519865/150‑1 (MQ=255)
                                                                                                                      cccGCTCAAAAATTAGAAAATTACGCCACACCACATACCACGGAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGacca                             <  7:933335/151‑1 (MQ=14)
                                                                                                                       ccGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTTAAAGAACTGAAATGAACAcaccac                            >  6:28329/1‑151 (MQ=14)
                                                                                                                          cTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTGAAAGTCATGTAATGGACAGAccccccc                         >  2:1097811/1‑150 (MQ=14)
                                                                                                                            cctaaaTTTGAAAAGTTCGTCATATCACAGACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCaa                        <  1:1422792/147‑1 (MQ=17)
                                                                                                                            ccAAAATTTGAAAATTGCTCAACAAAACATACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAg                       <  8:1672148/151‑1 (MQ=17)
                                                                                                                            ccAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGCAAGTGATCAAAGGCACACAcccccccgc                       >  7:1705576/1‑148 (MQ=17)
                                                                                                                            caaaaaTTTGAAAATTCCGCCACATAAAAGACCAACCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCaa                        <  5:1761192/148‑1 (MQ=14)
                                                                                                                            caaaaaTGTGAAAAGTGCTGAACATAACAGAAGACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAg                       <  4:1178779/149‑1 (MQ=17)
                                                                                                                              aaaaTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGATGTAAGGCACAGACCGCCCCAGCg                     >  3:653379/1‑151 (MQ=255)
                                                                                                                               aaaTTTGAAAATTGCTGAAAATAAATTACGTCGTAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCgg                    <  6:1324324/151‑1 (MQ=11)
                                                                                                                               aaaTTTGAAAAGTCCTTCAAATCACTGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCgg                    <  2:1367538/151‑1 (MQ=255)
                                                                                                                                 aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTGAAAGTGCTAGAAGCGCCAGACCCACCAAGCggg                   >  7:137200/1‑150 (MQ=17)
                                                                                                                                  tttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGATAGTGCTGTAAGGGCCAGACCCCCGACGCgggtt                 >  3:547992/1‑149 (MQ=17)
                                                                                                                                  tttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGATGTAAGGGCCAGACCACCCACGggggtt                 >  8:1402237/1‑149 (MQ=17)
                                                                                                                                  tttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTGATAGGGCTGTAAGGCACAGACCCCCCACGCGGGat                 >  3:1234989/1‑150 (MQ=255)
                                                                                                                                   ttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCCCAGACCCCCCAGGCGCGat                 >  8:67188/1‑149 (MQ=255)
                                                                                                                                    tGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGCAAGGCATGTAATTCACACACCGCCCACGCGCGAAt                >  8:303805/1‑150 (MQ=14)
                                                                                                                                    tGAAAAGTGCTGCAAAGCACAGACCACCCAACCGCGAATAGCTCACTTCGTAGAGCACGACCTTGCCAACGACCGCCTCGCGAGTTCGAGTCTCGTTTCCCGCTACAAAATATTAAATAACTTTAAATAACACACCACCCAAACTGGAAt                >  1:521811/1‑150 (MQ=9)
                                                                                                                                    ggAAAAGTGCTCCACAACAAAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATa               <  7:1244237/150‑1 (MQ=255)
                                                                                                                                      aaaaTTCCTGCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGc             <  8:474054/151‑1 (MQ=255)
                                                                                                                                          gTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGGACAGACCCCCCACGCGGGTATTGCtgcg         >  8:1454664/1‑148 (MQ=18)
                                                                                                                                            gctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCCCCCCAGCGGGAATAGCGCAGtt       >  2:704511/1‑151 (MQ=255)
                                                                                                                                             ctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCGCAGTTg      >  8:1494634/1‑151 (MQ=255)
                                                                                                                                                 aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTAAATTAATATAATAAACACACCAACCAAGAGCGAATATCTGAGTTTGTat  >  5:1511114/1‑150 (MQ=14)
                                                                                                                                                    |                                                                                                                                                   
CCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAG  >  NC_000913/4392309‑4392604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑