New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1744340	337 (0.820)	3 (0.010)	3/310	20.5	0.9%	coding (884/1374 nt)	mdtK	multidrug efflux system transporter
	?	NC_000913	= 1744392	304 (0.770)					coding (936/1374 nt)	mdtK	multidrug efflux system transporter
Rejected: Position hash score below cutoff.

TCTTACATTAAACGCGCCCGCTCCATGCGCGATATTCGTAACGAAAAAGGCACCGCAAAACCCGATCCTGCGGTTATGAAACGACTGATTCAACTCGGTTTGCCGATTGCGCTGGCACTGTTCTTTGAAGTGACACTGTTTGCCGTCGTGGCTCTGTTAGTGTCTCCGCTCGGTATTGTTGATGTCGCAGGACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1744084‑1744340 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcggtTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCGAGTTGAATCAGTCGTTTCATAACCGCAGGATCGGGT  <  NC_000913/1744392‑1744143                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTTACATTAAACGCGCCCGCTCCATGCGCGATATTCGTAACGAAAAAGGCACCGCAAAACCCGATCCTGCGGTTATGAAACGACTGATTCAACTCGGTTTGCCGATTGCGCTGGCACTGTTCTTTGAAGTGACACTGTTTGCCGTCGTGGCTCTGTTAGTGTCTCCGCTCGGTATTGTTGATGTCGCAGGACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGC                                                                                                                                                                                                                                                                  <  1:1547523/251‑1      CATTAAACGCGCCCGCTCCATGCGCGATATTCGTAACGAAAAAGGCACCGCAAAACCCGATCCTGCGGTTATGAAACGACTGATTCAACTCGGTTTGCCGATTGCGCTGGCACTGTTCTTTGAAGTGACACTGTTTGCCGTCGTGGCTCTGTTAGTGTCTCCGCTCGGTATTGTTGATGTCGCAGGACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGCGG                                                                                                                                                                                                                                                             >  1:2702357/1‑251                                                                                                                        GTTCTTTGAAGTGACACTGTTTGCCGTCGTGGCTCTGTTAGTGTCTCCGCTCGGTATTGTTGATGTCGCAGGACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGC                                                                                                                                                                                                                                                               >  2:914037/1‑135                                                                                                                        GTTCTTTGAAGTGACACTGTTTGCCGTCGTGGCTCTGTTAGTGTCTCCGCTCGGTATTGTTGATGTCGCAGGACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGC                                                                                                                                                                                                                                                               <  1:914208/135‑1                                                                                                                                                                                                ACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGCGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAAa                                                                                                  >  1:716368/1‑219                                                                                                                                                                                                ACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGCGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAAC                                                                                                  <  2:716224/220‑1                                                                                                                                                                                                                             TAATTTTCGGGCTTCCAATGTCGCTGGCGGAAGGGGTATGCGCATCCAGCGTTGAGCCCTGCCCCAGACGATAACCTACGCGGATAGTTCCCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCG                                      <  2:2150161/251‑1                                                                                                                                                                                                                                                             GCGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCCGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAAC                                                              >  1:1613886/1‑195                                                                                                                                                                                                                                                             GCGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAAC                                                              <  2:1613585/195‑1                                                                                                                                                                                                                                                             GCGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGT                                                                                                                                      <  1:3976898/123‑1                                                                                                                                                                                                                                                             GCGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGT                                                                                                                                      >  2:3976239/1‑123                                                                                                                                                                                                                                                              CGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCGAGTTGAATCAGTCGTTTCATAACCGCAGGAT       <  1:4418655/249‑1                                                                                                                                                                                                                                                              CGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCGAGTTGAATCAGTCGTTTCATAACCGCAGGAT       <  1:5373114/249‑1                                                                                                                                                                                                                                                              CGGTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCGAGTTGAATCAGTCGTTTCATAACCGCAGGAT       <  2:1914975/249‑1                                                                                                                                                                                                                                                                GTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTC                                                                                                                                                     <  1:5508421/105‑1                                                                                                                                                                                                                                                                GTTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTC                                                                                                                                                     >  2:5507498/1‑105                                                                                                                                                                                                                                                                 TTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCGAGTTGAATCAGTCGTTTCATAACCGCAGGATCGGGT  <  1:4238594/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTTACATTAAACGCGCCCGCTCCATGCGCGATATTCGTAACGAAAAAGGCACCGCAAAACCCGATCCTGCGGTTATGAAACGACTGATTCAACTCGGTTTGCCGATTGCGCTGGCACTGTTCTTTGAAGTGACACTGTTTGCCGTCGTGGCTCTGTTAGTGTCTCCGCTCGGTATTGTTGATGTCGCAGGACACCAGATTGCCCTGAACTTTAGTTCACTAATGTTCGTGCTTCCAATGTCGCTGGCGGCAGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1744084‑1744340 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcggtTTGCGCATCCAGCGTTGAGCCCTGACCCAGACGATAACCTACGCGGATAGTTACCGCTGCCGCCAGCGACATTGGAAGCACGAACATTAGTGAACTAAAGTTCAGGGCAATCTGGTGTCCTGCGACATCAACAATACCGAGCGGAGACACTAACAGAGCCACGACGGCAAACAGTGTCACTTCAAAGAACAGTGCCAGCGCAATCGGCAAACCGAGTTGAATCAGTCGTTTCATAACCGCAGGATCGGGT  <  NC_000913/1744392‑1744143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.