| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,870,876 | Δ1 bp | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,870,875 | 0 | G | . | 99.4% | 696.6 / ‑2.4 | 156 | coding (366/1764 nt) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (96/58); minor base C (0/1); total (97/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 167 total aligned reads displayed.
ATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACC > NC_000913/3870801‑3870950 | aTGGCAATACCGCTTTGAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgc < 1:67135/76‑2 (MQ=255) tGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcg > 2:4952131/1‑74 (MQ=255) tGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcg > 1:453355/1‑74 (MQ=255) tGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcg < 1:635103/76‑3 (MQ=255) ggCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcgc > 2:5234447/1‑73 (MQ=255) ggCAATACCGCTTTTAACGCTCTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcgc < 2:2716494/76‑4 (MQ=255) aaTACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCCCCTGC‑GCGCCCg > 2:672161/1‑76 (MQ=255) tACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCt < 2:1538596/76‑1 (MQ=255) tACCCCTGTTAACGCTTTGATGCATTGCGGACCAAAAGCCGTTGACGGAAATATCTTCAGCGCCTGC‑GCGCCCGCt > 2:4096827/1‑76 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt > 1:2111979/1‑76 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt > 2:221738/1‑76 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt > 1:3671918/1‑76 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt > 2:5206077/1‑76 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCCCtc > 2:217179/1‑75 (MQ=255) ccGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTc > 2:4965100/1‑76 (MQ=255) ccGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTc < 1:3434455/76‑1 (MQ=255) gCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGa > 2:1831111/1‑76 (MQ=255) gCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGa < 1:1165678/76‑1 (MQ=255) gCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGa < 1:1998864/76‑1 (MQ=255) cTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAg > 1:3306720/1‑76 (MQ=255) ttttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGCAATATTTTCATCGCCCGC‑GCGCCCGCTTCGAgc > 2:4552517/1‑76 (MQ=255) ttttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgc < 1:3737899/76‑1 (MQ=255) ttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgcgc < 2:1171378/76‑1 (MQ=255) ttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgcgc < 1:4317292/76‑1 (MQ=255) tagcGCTTGGAGGTATGGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGcgcg < 2:696942/73‑1 (MQ=255) tAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGcgcg < 2:3247905/76‑1 (MQ=255) tAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATAGTTTCAGCGCCTGC‑GCGCCCGCTTCGAgcgac > 2:3695549/1‑74 (MQ=255) aCGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCggg > 1:221780/1‑75 (MQ=255) aCGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAAGATTTTCAGCGCCTG‑AGCGCCCGCGTCGAGCGCGGt > 2:4369772/1‑76 (MQ=255) cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTa < 2:3074610/76‑1 (MQ=255) cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTa > 1:3134973/1‑76 (MQ=255) cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTa > 1:2127026/1‑76 (MQ=255) gCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTaa > 2:4139883/1‑76 (MQ=255) tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAg > 1:5667391/1‑76 (MQ=255) tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAg > 1:5818595/1‑76 (MQ=255) tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGGAAAg > 2:5318066/1‑76 (MQ=255) ttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAgg > 1:1586001/1‑76 (MQ=255) tGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGc > 2:5157051/1‑76 (MQ=255) gaggTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCt < 1:2044688/73‑1 (MQ=255) gATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCt > 2:4623640/1‑76 (MQ=255) aTGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCtt < 1:5359576/76‑1 (MQ=255) tGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTc > 1:753871/1‑76 (MQ=255) tGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTc < 1:1132488/76‑1 (MQ=255) gTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCg > 1:2454919/1‑76 (MQ=255) ttGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGCGCGCGGTAAAGGCTTCGGTc > 2:4138582/1‑76 (MQ=255) ttGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 1:72742/76‑1 (MQ=255) ttGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 1:543073/76‑1 (MQ=255) ttGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 1:2345128/76‑1 (MQ=255) cGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGcc > 1:3477950/1‑76 (MQ=255) ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCg > 2:3246097/1‑76 (MQ=255) aCCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTc < 1:5237066/76‑1 (MQ=255) ccAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcg > 1:4051600/1‑76 (MQ=255) cAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgc < 1:551573/76‑1 (MQ=255) aaaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgcg > 1:5642978/1‑76 (MQ=255) aaaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgcg < 2:4256349/76‑1 (MQ=255) aaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCgcgc > 1:1685168/1‑76 (MQ=255) aaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCgcgcc > 2:1865038/1‑75 (MQ=255) aaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCa > 1:2137246/1‑76 (MQ=255) ccGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGcc < 1:5185415/76‑1 (MQ=255) ccGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGcc > 1:1709210/1‑76 (MQ=255) cGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGccgccg > 2:5819511/1‑76 (MQ=255) cGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCg < 1:2191075/76‑1 (MQ=255) cGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCg > 1:3826224/1‑76 (MQ=255) cGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCg > 2:5416847/1‑76 (MQ=255) gATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCgg > 2:3863019/1‑76 (MQ=255) aTGAGGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCCCGCAGCCggg < 2:3797291/76‑1 (MQ=255) aTGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCggg > 1:2579639/1‑76 (MQ=255) tGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCgggg < 1:694394/76‑1 (MQ=255) gACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGGAAAGGCTTCGGTCGCCGTCGCGCAGGCGGGGc > 2:1317234/1‑76 (MQ=255) cGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAg > 2:2101034/1‑76 (MQ=255) cGGAAATACTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAg > 1:4464390/1‑76 (MQ=255) ggAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGa > 2:2424685/1‑76 (MQ=255) ggAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGa < 2:1511853/76‑1 (MQ=255) gAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGag > 1:3603037/1‑75 (MQ=255) gAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGAGCAGCCGGGGCAGAc > 1:4470817/1‑76 (MQ=255) gAAATATTTTCAGCGCCTGC‑GCGCCCGCCTCGAGCGCGGTGAAGGCTTCCGTCGCCGTCGCGCAGTCGGCGCAGAc > 1:4651080/1‑76 (MQ=255) gAAAGATTGTCAGCGCCTGC‑GCGCCCGCGTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGAc < 2:1084554/76‑1 (MQ=255) gagtatTTGCAGCGCCGGC‑GCGCCCGCGTCGAGCGCGTTGAAGGCTTCGGTCGCCGTCGCGGAGCCGGGGCAGACg < 2:4319548/73‑1 (MQ=255) aaaTATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACg > 2:627051/1‑76 (MQ=255) aaaTATTTGCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACg < 2:2674701/76‑1 (MQ=255) atatTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGt > 1:4433053/1‑76 (MQ=255) atTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCa > 2:4596804/1‑76 (MQ=255) atTTTCAGCGCCTGC‑GCGCCCGCTGCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCa < 2:1411522/76‑1 (MQ=255) atTTGCAGCGCC‑GCCGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCa < 2:1691182/76‑1 (MQ=255) tttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCCGGGCAGCCGGTCacg > 2:3450073/1‑74 (MQ=255) ttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCCGCCGGGGCAGACGGTCATGc > 2:908625/1‑76 (MQ=255) tCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGcc > 2:3628753/1‑76 (MQ=255) cAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCg > 2:4821598/1‑76 (MQ=255) cAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCg > 1:2248243/1‑76 (MQ=255) aGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAATGCTTCGGTCGCCGTCGAGCATACGGCGTAGACGGTCATGCCGt > 1:1875207/1‑76 (MQ=255) gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa < 2:3951270/76‑1 (MQ=255) gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa > 1:2624250/1‑76 (MQ=255) gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGCCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGGCATCCCGtc > 2:547616/1‑75 (MQ=255) gcgcCGGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa < 1:5376162/76‑1 (MQ=255) cgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAg > 1:1951295/1‑76 (MQ=255) cgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAg < 1:2190302/76‑1 (MQ=255) cgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGGCATGCCGTAg > 1:288279/1‑76 (MQ=255) gcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGc > 1:455584/1‑76 (MQ=255) ccTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGcc < 1:5234448/76‑1 (MQ=255) ggcgCCGGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCTTCCTGGCCATACGGTCATGCCGTAGCCCAcc < 1:4369773/76‑1 (MQ=255) | ATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACC > NC_000913/3870801‑3870950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |