| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,975,313 | Δ1 bp | intergenic (+173/‑901) | wzxE → / → wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,975,310 | 0 | C | . | 99.0% | 444.8 / ‑0.8 | 103 | intergenic (+170/‑904) | wzxE/wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (41/59); total (43/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 116 total aligned reads displayed.
CGCGCGCGAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGTTTTTTCTT > NC_000913/3975235‑3975382 | cgcgcgcgAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCCATTTTTc > 1:1116619/1‑76 (MQ=255) gcgcgAGTTTATGGTTGTTGGCACGGACGACGGCGTAAGTGATAGCTGTCCGGCGCTTTATGTGCCATTTTTccct > 2:5452135/1‑75 (MQ=255) gcgcgAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTtcct > 1:2614678/1‑75 (MQ=255) gcgcgAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTccct > 2:2598965/1‑75 (MQ=255) gcgcgAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTccct < 2:3001497/76‑2 (MQ=255) cgcgAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTccctg < 1:4116704/76‑3 (MQ=255) cgcgAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTccctg < 1:2430246/76‑3 (MQ=255) gAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGa < 2:5726203/76‑1 (MQ=255) gAGTTTATGGTTGTTGGCAAGGACGACGGCGTAAGTGATAGCTGTCCGGCGCTGTCTGTGCAATTTTT‑CCCTGGGa > 2:2298112/1‑76 (MQ=255) tttATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGaaaa < 1:858060/76‑1 (MQ=255) ttATGGTTGTTGGCAAGGGCGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGaaaaa < 2:148961/76‑1 (MQ=255) tATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGaaaaaa < 1:5426084/76‑1 (MQ=255) gaTGGTTGTTGGCAAGGACGACGGCTTTAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGaaaaaa < 2:3280655/75‑1 (MQ=255) ttGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAAt < 1:152565/75‑1 (MQ=255) aTGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAAt < 2:4263925/76‑1 (MQ=255) tGGGTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATc < 2:5087432/76‑1 (MQ=255) ggTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTccc > 2:4758540/1‑63 (MQ=255) ggTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTccc < 1:4758541/63‑1 (MQ=255) ggTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCg < 1:2720498/76‑1 (MQ=255) gttgttGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCC‑GGGACAAAATCGc > 2:5526601/1‑76 (MQ=255) gttgttGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGc > 2:1280805/1‑76 (MQ=255) gttgttGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGc > 2:245370/1‑76 (MQ=255) gttgttGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGc > 1:1070516/1‑76 (MQ=255) ttgttgGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCt > 1:3000797/1‑76 (MQ=255) gtgttgGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCt < 2:3306071/75‑1 (MQ=255) gtgttgGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCt < 2:9353/75‑1 (MQ=255) tgttgGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTg < 1:5491997/76‑1 (MQ=255) gttgGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTgg < 1:3935226/76‑1 (MQ=255) ggtgGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTgg < 2:860630/74‑1 (MQ=255) tgGCAAGGACGACGTCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCg < 2:2629411/76‑1 (MQ=255) ggCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCgg < 1:347986/76‑1 (MQ=255) ggCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCgg < 2:2957229/76‑1 (MQ=255) ggCAAGGACGAAGGCTTAAGTGATAGCTGTACGGAGCTCTATGCGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCgg > 1:4255854/1‑76 (MQ=255) cAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGaa > 1:1052326/1‑76 (MQ=255) cAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGaa < 1:1280805/76‑1 (MQ=255) cAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGaa < 1:2810399/76‑1 (MQ=255) aaGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAg > 2:1817548/1‑76 (MQ=255) aaGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAg > 1:3915379/1‑76 (MQ=255) aaGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAg < 1:2602138/76‑1 (MQ=255) aGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGc < 1:5313593/76‑1 (MQ=255) aGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGc < 1:1139488/76‑1 (MQ=255) aGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGc < 1:668209/76‑1 (MQ=255) ggACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCg > 1:5285791/1‑76 (MQ=255) gacgacGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCgg < 1:5496515/76‑1 (MQ=255) gacgacGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCgg < 1:1239587/76‑1 (MQ=255) gacgacGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATAGCTGGCGGAAGCgg > 1:1967179/1‑76 (MQ=255) acgacgGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGt < 2:2230819/76‑1 (MQ=255) gacgGCTTAGGGGAGGGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCa < 2:4522882/76‑1 (MQ=255) gacgGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCa > 1:3437786/1‑76 (MQ=255) gacgGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCa > 2:3146888/1‑76 (MQ=255) gacgGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCa < 2:4497797/76‑1 (MQ=255) cgtcTTGAGTGATAGCTGTCCGGGTCTTTCTGTGCAATTTTT‑CCCTGTGAAAAAATCGCTGGCGTAAGCGGTCATc < 1:5586808/73‑1 (MQ=255) cgGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATc < 1:3428703/76‑1 (MQ=255) gCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATcgc < 1:2092315/76‑1 (MQ=255) gCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATcgc < 1:1851018/76‑1 (MQ=255) cTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATcgcg < 1:4800083/76‑1 (MQ=255) cTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATcgcg > 1:2186211/1‑76 (MQ=255) cTTAAGTGATAGCTGTCCGGCACTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATcgcg > 2:3462978/1‑76 (MQ=255) ttAAGGGAGAGCTGCCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAAACGCCATCGGCAGCGCTCATcgcac > 1:3866739/1‑74 (MQ=255) gtAAGTGATAGCTGTACGGCGCTTTCTGTGCAA‑TTTTACCCTAGACAAAAATCGCCGTCGGCAGCCGTCATtgcgc > 2:522216/2‑75 (MQ=255) ctgTGCTAGCTGTCCTTCTCTTTCTGTGCAATTTTT‑CCCTGGGAAACCATCGCTGGCGTAAGCGGCCAACGCGaaa < 1:5190744/74‑1 (MQ=255) aaGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAACTCGCTGGCGGCAGCGGTCATCGCGaaa < 2:3580373/76‑1 (MQ=255) aGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAg < 1:5150073/76‑1 (MQ=255) aGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCCGTCATCGCGAAAg > 2:603498/1‑76 (MQ=255) tGATAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCa > 2:4066864/1‑76 (MQ=255) aTAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCaaa < 1:5372201/76‑1 (MQ=255) tAGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCaaaa > 1:2286543/1‑76 (MQ=255) aGCTGTCCGGCTCTTTCTGTGCAATGTTT‑CACTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGAAAAAg < 1:2598101/76‑1 (MQ=37) aGCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAg > 1:2217275/1‑76 (MQ=255) gCTGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAACCAAAAGc < 2:1070516/76‑1 (MQ=255) tGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTa < 2:4586628/76‑1 (MQ=255) tGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTa > 1:3747786/1‑76 (MQ=255) tGTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTa > 1:2176845/1‑76 (MQ=255) gTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTaa < 2:1269063/76‑1 (MQ=255) gTCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGATGGCGGAAGCGGTCATCGCGAAAGCAAAAGCtga > 1:1672011/1‑74 (MQ=39) tCCGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTTAc > 1:5715512/1‑76 (MQ=39) ccGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAAcc > 2:1763435/1‑76 (MQ=255) cGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCg < 2:2594732/76‑1 (MQ=255) cGGCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCg < 2:3915378/76‑1 (MQ=255) ggCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGt < 2:2286543/76‑1 (MQ=255) ggCGCTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAAACGt < 1:1268879/76‑1 (MQ=39) cgcTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGCca > 2:3041806/1‑76 (MQ=39) gcTTTCTGTGGAAATTTT‑TCCTGGGTAAAAAGCGCTGGCGGAAGCGGCCATCAACAAAGCCAAAACCAACCCTccg > 2:4267357/1‑74 (MQ=255) gcTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTcag > 2:4052921/1‑76 (MQ=255) cTTTCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTcagc > 2:5723526/1‑76 (MQ=255) ttCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTcagcag < 2:3838396/76‑1 (MQ=255) ttCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCAGCGCGAAAGCAAAAGCTAACCGGcagcag > 1:3049784/1‑76 (MQ=255) tCTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCagcagc < 2:5106708/76‑1 (MQ=255) cTGTGCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCCGCAGCg > 2:5743173/1‑76 (MQ=39) tgtgCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGt > 1:3574160/1‑76 (MQ=255) tgtgCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGt < 2:3963306/76‑1 (MQ=255) tgtgCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGt > 1:3737792/1‑76 (MQ=255) gtgCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCgct > 1:3953612/1‑74 (MQ=255) gtgCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGtt > 2:4543563/1‑76 (MQ=255) tgCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGttt < 1:1619332/76‑1 (MQ=255) gCAATTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGcttt > 2:2684680/1‑76 (MQ=39) aaTTTTT‑CCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGtttttt > 1:3904842/1‑76 (MQ=255) ttttTCCCTGGGAAAAAATCGCGGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGTTTTttct < 2:1271660/76‑1 (MQ=255) ttttCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGTTTTttctt < 1:675382/76‑1 (MQ=255) ttttCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGTTTTttctt < 2:4047390/76‑1 (MQ=255) | CGCGCGCGAGTTTATGGTTGTTGGCAAGGACGACGGCTTAAGTGATAGCTGTCCGGCGCTTTCTGTGCAATTTTTCCCCTGGGAAAAAATCGCTGGCGGAAGCGGTCATCGCGAAAGCAAAAGCTAACCGTCAGCAGCGTTTTTTCTT > NC_000913/3975235‑3975382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |