| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,979,546 | Δ1 bp | coding (1047/1386 nt) | yifK → | putative amino acid/amine transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,979,545 | 0 | G | . | 98.8% | 742.8 / ‑0.7 | 170 | coding (1046/1386 nt) | yifK | putative amino acid/amine transport protein |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base . (91/76); minor base C (2/0); total (94/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 174 total aligned reads displayed.
AAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG > NC_000913/3979472‑3979616 | ttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAc < 2:2126134/76‑1 (MQ=255) tCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTCA‑TTGGCTCATGCCT‑GAACTAca < 1:3054351/76‑1 (MQ=255) cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcatca > 1:3646940/1‑76 (MQ=255) cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcatca > 2:797783/1‑76 (MQ=255) gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcctcat > 1:534568/1‑76 (MQ=255) gTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcatcat > 2:3428730/1‑76 (MQ=255) cACGGCGTACCGGTTGCGGGTGTGGCAGTATATATTGCTATTCTGCTTATTT‑GCTCGTGCCT‑GAAATACATCAttt > 1:1352975/1‑75 (MQ=255) aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTcc > 1:665789/1‑76 (MQ=255) aCGGCGGACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCAtttc > 1:139479/1‑74 (MQ=255) cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTccc < 2:5500096/76‑1 (MQ=255) ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTACTATTCTGCCAA‑TTGGCTCACGCC‑CGAACTACCTCACTCCCa > 2:3684416/1‑76 (MQ=255) cGTTCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAAt < 2:5313664/76‑1 (MQ=255) cGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTCCATCATTCCCAAt > 1:4001610/1‑76 (MQ=255) cGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAAt > 1:5847866/1‑76 (MQ=255) cGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAAt < 2:3019171/76‑1 (MQ=255) gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCCTGCCT‑GAACTACATCATTCCCAATc > 2:3069779/1‑76 (MQ=255) tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATTCCT‑GAACTACATTCTTTCCaaccc > 2:5693946/1‑73 (MQ=255) aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCg > 2:4626833/1‑76 (MQ=255) aCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCg > 1:729792/1‑76 (MQ=255) cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTTA‑TTGGCTCCTGCCT‑GAACTACATCATTCCCAATCCGCa > 2:3880098/1‑76 (MQ=255) cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa < 1:1045581/76‑1 (MQ=255) cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa < 1:3811840/76‑1 (MQ=255) cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa > 1:1290441/1‑76 (MQ=255) cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCACTCCCAATCCGCa > 1:1117338/1‑76 (MQ=255) ggTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAg > 1:1381285/1‑76 (MQ=255) ggTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAg < 1:4626834/76‑1 (MQ=255) ggTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAg < 1:2605128/76‑1 (MQ=255) ggTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTAATGCCT‑GAACTACATCATTCCCAATCCGCAg > 1:4714979/1‑76 (MQ=255) gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc < 1:2975064/76‑1 (MQ=255) gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc < 1:5629840/76‑1 (MQ=255) gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGc < 1:5461927/76‑1 (MQ=255) gTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACNNCATCATTCCCAATCCGCAGc < 1:4437517/76‑1 (MQ=255) ttGCGGGTGTGGCAGGATCGATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCg > 2:2356787/1‑76 (MQ=255) tGCGGGTGTGGCGGGATCTAGTGATATTCTGCTAA‑CTGGCGCATGCCT‑GAACCAGAAGATTCCCAAACCGCACCgt > 2:707763/1‑76 (MQ=255) tGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAAACCGCACCgt > 2:706798/1‑76 (MQ=255) gCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg < 1:2835137/76‑1 (MQ=255) gCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg > 2:2527435/1‑76 (MQ=255) gCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg < 1:2724832/76‑1 (MQ=255) gCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtg > 1:4875909/1‑76 (MQ=255) cGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgt > 1:1659445/1‑76 (MQ=255) cGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgt < 2:3688562/76‑1 (MQ=255) cGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgt > 1:2074377/1‑76 (MQ=255) tggTGTGTCATTCTCTGTTGCTACTCTGCTAA‑TTGGCTCCTGCCT‑GAACTAGAGCATTCCCAGTCCGCAGCgtgtg < 2:4001467/75‑1 (MQ=255) gggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtg < 2:1093474/76‑1 (MQ=255) gggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtg < 2:3965802/76‑1 (MQ=255) ggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt < 1:5242424/76‑1 (MQ=255) ggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtgt < 1:1936001/76‑1 (MQ=255) gtgtGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt > 1:4466172/1‑76 (MQ=255) tgtgGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGttt < 1:5182319/76‑1 (MQ=255) tgtgGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGttt < 1:1331239/76‑1 (MQ=255) ggCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc < 1:2165799/76‑1 (MQ=255) gCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtct < 2:1438266/76‑1 (MQ=255) gCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtct > 2:2708660/1‑76 (MQ=255) cAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta < 1:4740592/76‑1 (MQ=255) aGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctac > 2:2762915/1‑76 (MQ=255) gtatgtatTGCTATTCTGCTCA‑TTGGCTCATGCCT‑TAACTACATCTTTCCCAATCCGCAGCGTGTGTTTgtctact < 2:5389118/76‑2 (MQ=255) gTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacg > 2:3163354/1‑76 (MQ=255) gTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacg > 2:2347186/1‑76 (MQ=255) tATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgt > 2:1933323/1‑76 (MQ=255) tATCTATTGCTATTCGGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgt < 2:286328/76‑1 (MQ=255) aTCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGTCGCGTGTGTTTgtctacgtc > 1:2993994/1‑76 (MQ=255) tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GCCGTGCATCATGCCCAAGCGGCAGCCGGTGTTTgtctacgtct < 2:2491117/76‑1 (MQ=255) tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACCTCATTCCCCATCCGCAGCGTGTGTTTgtctacgtct > 2:3252433/1‑76 (MQ=255) tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct > 2:4983471/1‑76 (MQ=255) tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct < 1:2631627/76‑1 (MQ=255) cTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtcta < 2:3048264/76‑1 (MQ=255) cTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtcta < 1:3585092/76‑1 (MQ=255) tATCGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGCGTGTTTgtctacgactac > 2:1656963/1‑76 (MQ=255) aTTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACa > 1:1971474/1‑76 (MQ=255) aTTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACa > 2:5522155/1‑76 (MQ=255) ttGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg > 2:4301636/1‑76 (MQ=255) tGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGt > 1:224437/1‑76 (MQ=255) gCTATTCTGCTCA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg > 2:5017377/1‑76 (MQ=255) tATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGcc > 1:4500793/1‑76 (MQ=255) aTTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa < 2:847240/76‑1 (MQ=255) aTTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa > 1:4548615/1‑76 (MQ=255) aTTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa > 1:4712747/1‑76 (MQ=255) ttCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAg < 2:2271094/76‑1 (MQ=255) cTGCTAA‑TTGGCTCATGCCT‑GAACTAGATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCg < 2:5212831/76‑1 (MQ=255) gCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTg > 2:1872301/1‑76 (MQ=255) gCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTg < 1:5035056/76‑1 (MQ=255) cTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc < 2:4001119/76‑1 (MQ=255) cTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGc < 1:2695057/76‑1 (MQ=255) ttggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc < 1:1742641/73‑1 (MQ=255) ttggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc < 2:1579004/73‑1 (MQ=255) ttggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc > 2:13598/4‑76 (MQ=255) ttggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc < 2:4764128/73‑1 (MQ=255) ttggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTcc < 2:5081145/73‑1 (MQ=255) tggCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCCGCGTGCTTCCg > 2:3631856/3‑76 (MQ=255) gCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCggg < 2:3621788/76‑1 (MQ=255) cTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgggg < 2:4592164/76‑1 (MQ=255) cTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgggg > 1:2895749/1‑76 (MQ=255) cTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCgggg < 2:1928601/76‑1 (MQ=255) tCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGa > 2:4456885/1‑76 (MQ=255) cATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt < 1:969330/76‑1 (MQ=255) cATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGAt > 1:2482642/1‑76 (MQ=255) aTGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATg < 2:1038611/76‑1 (MQ=255) aTGCCT‑GAACTACATCAGTCCCAATCCGCAGCGCGGGTTTGTCTACGTCTACCGTGCCAGCGTGCTTCCGGGGATg > 1:748941/1‑76 (MQ=255) tGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATgg > 1:5721276/1‑76 (MQ=255) tGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATgg > 1:3294328/1‑76 (MQ=255) | AAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGTGCTTCCGGGGATGG > NC_000913/3979472‑3979616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |