Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,573,190 Δ1 bp coding (1487/1542 nt) yjiU → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,573,1890G.100.0% 490.0 / NA 107coding (1486/1542 nt)yjiUhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (45/62);  total (45/62)

Only 100 of 111 total aligned reads displayed.

AAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGC  >  NC_000913/4573115‑4573260
                                                                          |                                                                       
aagaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAga                                                                        >  2:2178804/1‑75 (MQ=255)
aagaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAga                                                                        <  2:2988233/76‑2 (MQ=255)
  gaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAgagc                                                                      <  1:3428898/76‑4 (MQ=255)
  gaagCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAgagc                                                                      >  1:3891659/1‑73 (MQ=255)
    agCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                   <  2:1072790/76‑1 (MQ=255)
    agCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                   <  2:5703371/76‑1 (MQ=255)
    agCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                   <  1:2860250/76‑1 (MQ=255)
       aTGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATg                                                                >  1:4898619/1‑76 (MQ=255)
        tGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGa                                                               >  2:3114168/1‑76 (MQ=255)
           gCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACtt                                                            <  2:441263/76‑1 (MQ=255)
            cccAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACttt                                                           <  2:5524948/76‑1 (MQ=255)
            cccAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACttt                                                           <  2:5323447/76‑1 (MQ=255)
             ccAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACtttt                                                          <  2:4148374/76‑1 (MQ=255)
              cAACTTCCCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACttttt                                                         <  2:5685675/76‑1 (MQ=255)
               aaCTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTc                                                        <  2:5645833/76‑1 (MQ=255)
                aCTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCt                                                       <  2:1265810/76‑1 (MQ=255)
                aCTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCt                                                       >  1:2686162/1‑76 (MQ=255)
                 cTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCtt                                                      <  1:3781803/76‑1 (MQ=255)
                  ttACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCttt                                                     >  1:5657829/1‑76 (MQ=255)
                  ttACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCttt                                                     <  1:1194182/76‑1 (MQ=255)
                   taccgtaccgCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTa                                                    <  1:1818558/76‑1 (MQ=255)
                   tACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTa                                                    <  2:2575154/76‑1 (MQ=255)
                   tACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTa                                                    <  2:540671/76‑1 (MQ=255)
                   tACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTa                                                    >  1:4793384/1‑76 (MQ=255)
                    aCCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCat                                                                   >  1:5351688/1‑60 (MQ=255)
                    aCCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTaa                                                   <  1:4612731/76‑1 (MQ=255)
                     ccGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAAt                                                  >  1:1715248/1‑76 (MQ=255)
                       ggACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTtcatca                                                <  2:5452124/76‑1 (MQ=255)
                       ggACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCa                                                <  2:5409362/76‑1 (MQ=255)
                       ggACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCa                                                <  1:4903074/76‑1 (MQ=255)
                        gACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCAc                                               >  2:753248/1‑76 (MQ=255)
                        gACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCAc                                               >  2:3381045/1‑76 (MQ=255)
                        gACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCAc                                               <  2:4793383/76‑1 (MQ=255)
                         aCCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACg                                              <  2:880805/76‑1 (MQ=255)
                         aCCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACg                                              >  2:3934556/1‑76 (MQ=255)
                          ccGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACgg                                             <  2:3879758/76‑1 (MQ=255)
                           cGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGa                                            >  1:817950/1‑76 (MQ=255)
                            gCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAt                                           >  1:4825522/1‑76 (MQ=255)
                            gCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAt                                           <  2:810039/76‑1 (MQ=255)
                            gCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAt                                           <  1:5404702/76‑1 (MQ=255)
                            gCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGAt                                           <  2:2182202/76‑1 (MQ=255)
                              ttGCAGTACTGAAACCCGATGGCAACCGTTTGTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGc                                         <  2:5610964/76‑1 (MQ=255)
                               tGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGcc                                        <  2:5159950/76‑1 (MQ=255)
                               tGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGcc                                        <  2:5160997/76‑1 (MQ=255)
                                gCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCt                                       <  1:1741074/76‑1 (MQ=255)
                                gCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCt                                       <  1:132450/76‑1 (MQ=255)
                                gCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCt                                       >  1:532994/1‑76 (MQ=255)
                                 cAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTg                                      <  2:904477/76‑1 (MQ=255)
                                  aGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTgg                                     >  2:5136264/1‑76 (MQ=255)
                                   gTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGa                                    >  2:4967271/1‑76 (MQ=255)
                                     aCTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAtt                                  >  1:2683973/1‑76 (MQ=255)
                                      cTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAttt                                 <  2:4898618/76‑1 (MQ=255)
                                      cTGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGAttt                                 <  2:2349125/76‑1 (MQ=255)
                                       tGAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTg                                <  1:3759320/76‑1 (MQ=255)
                                        gAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGc                               >  2:4643481/1‑76 (MQ=255)
                                        gAAACCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGc                               <  1:1497023/76‑1 (MQ=255)
                                          aaCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGccc                             <  1:1624378/76‑1 (MQ=255)
                                          aaCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGccc                             <  2:4064498/76‑1 (MQ=255)
                                           aCCCGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCg                            >  1:4309049/1‑76 (MQ=255)
                                             ccGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCt                                       >  1:4162860/1‑63 (MQ=255)
                                             ccGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCt                                       <  2:4162859/63‑1 (MQ=255)
                                             ccGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGt                          <  1:839875/76‑1 (MQ=255)
                                             ccGATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCACgct                          >  2:849249/1‑74 (MQ=255)
                                             ccGAGGGGAACCGTTTTTATTTACCGAAA‑GAGCATATGGCTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGt                          <  2:5659504/76‑1 (MQ=255)
                                               gATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTaa                        <  1:157734/76‑1 (MQ=255)
                                               gATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTaa                        >  1:5283593/1‑76 (MQ=255)
                                               gATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTaa                        <  2:1306432/76‑1 (MQ=255)
                                               gATGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTaa                        >  2:4862844/1‑76 (MQ=255)
                                                agggCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGCaaa                       >  2:3566722/3‑75 (MQ=255)
                                                aTGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTCTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAAc                       <  1:3140462/76‑1 (MQ=255)
                                                 tGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAAcc                      >  1:3237491/1‑76 (MQ=255)
                                                 tGGCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAAcc                      >  1:4507535/1‑76 (MQ=255)
                                                  ggCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCa                     >  1:3507446/1‑76 (MQ=255)
                                                  ggCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCa                     >  1:2741631/1‑76 (MQ=255)
                                                  ggCAACCGTTTTTATTTACAGAAA‑GAGCATATGAATTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCa                     >  1:249293/1‑76 (MQ=255)
                                                   gCAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCaa                    >  1:2556078/1‑76 (MQ=255)
                                                    cAACCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAAt                   <  1:4257981/76‑1 (MQ=255)
                                                     aaCCGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATa                  >  2:5590153/1‑76 (MQ=255)
                                                       ccGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATaaa                <  1:3629340/76‑1 (MQ=255)
                                                       ccGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATaaa                >  1:3995966/1‑76 (MQ=255)
                                                       ccGTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGCAACCAATaaa                >  2:1749057/1‑76 (MQ=255)
                                                         gTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAAt              <  2:5100781/76‑1 (MQ=255)
                                                         gTTTTTATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGGAACCAATaaaac              >  1:239401/1‑75 (MQ=255)
                                                           ttttATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATcc            >  1:3923336/1‑76 (MQ=255)
                                                           ttttATTTACCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATcc            >  1:1008551/1‑76 (MQ=255)
                                                            tttatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCt           <  1:28160/76‑1 (MQ=255)
                                                            tttatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCt           <  2:5785227/76‑1 (MQ=255)
                                                             ttatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTg          <  1:4981599/76‑1 (MQ=255)
                                                              tatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTgg         >  1:79523/1‑76 (MQ=255)
                                                              tatttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTgg         <  2:392842/76‑1 (MQ=255)
                                                               atttaCCGAAA‑GAGCATGTGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGa        >  1:2339841/1‑76 (MQ=255)
                                                                tttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCGCGGTAACCAATAAAATCCTGGAt       <  2:1449825/76‑1 (MQ=255)
                                                                tttaCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGAt       >  2:794524/1‑76 (MQ=255)
                                                                  taCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAc     <  1:4655344/76‑1 (MQ=255)
                                                                  taCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATAc     >  1:1222378/1‑76 (MQ=255)
                                                                  taCCGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGGAACCAATAAAATCCTGGATAc     <  2:1429128/76‑1 (MQ=255)
                                                                   tccGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATagg    <  2:4594905/75‑3 (MQ=255)
                                                                    ccGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACgg   <  1:881592/76‑1 (MQ=255)
                                                                     cGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGc  >  2:5610877/1‑76 (MQ=255)
                                                                     cGAAA‑GAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGc  >  1:5044827/1‑76 (MQ=255)
                                                                          |                                                                       
AAGAAGCATGGGCCCAACTTACCGGACCGCTTGCAGTACTGAAACCCGATGGCAACCGTTTTTATTTACCGAAAGGAGCATATGACTTTTTCTTTAATCACGGATGCCTGGATTTGCCCGGTAACCAATAAAATCCTGGATACGGC  >  NC_000913/4573115‑4573260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑