| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,812,859 | Δ1 bp | intergenic (‑105/+46) | ygaG ← / ← gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,812,858 | 0 | C | . | 98.9% | 386.7 / ‑4.3 | 87 | intergenic (‑104/+47) | ygaG/gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (51/35); minor base G (0/1); total (51/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACC > NC_000913/2812783‑2812929 | aTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTc > 1:3562205/1‑76 (MQ=255)aTTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCACCCCTGAATTc > 2:904303/1‑76 (MQ=255) ttttCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTca < 2:917322/76‑2 (MQ=255) tttCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTcag > 1:3871720/1‑74 (MQ=255) tttCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTcag < 1:4282874/76‑3 (MQ=255) tttCTGAACTCTGTCGTCCCAGGCGAGTCGTAGTATATGAAAGACGCTCATTTGTTATCATCATCCCTGAATTcag < 1:4291708/76‑3 (MQ=255) ttCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTcaga > 1:4505270/1‑73 (MQ=255) cTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAgaga > 2:5631675/1‑76 (MQ=255) cTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAgaga > 2:1994337/1‑76 (MQ=255) tGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAt > 2:4649942/1‑76 (MQ=255) caCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa > 2:4654683/2‑76 (MQ=255) aaCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa > 2:5114022/1‑76 (MQ=255) aaCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa < 1:564424/76‑1 (MQ=255) aCTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGaa > 2:4806203/1‑76 (MQ=255) ctctTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGaaa > 2:5438652/1‑76 (MQ=255) ctctTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACACGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGaaa > 1:2660556/1‑76 (MQ=255) tctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAt < 1:329561/76‑1 (MQ=255) ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa > 2:4552344/1‑72 (MQ=255) ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa < 1:4552345/72‑1 (MQ=255) ctttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAtt > 1:5725125/1‑76 (MQ=255) tttcttCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAAttt > 2:4790114/1‑76 (MQ=255) tcttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTg > 1:5305715/1‑76 (MQ=255) tcttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTg > 2:4537475/1‑76 (MQ=255) cttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTgg > 1:3185346/1‑76 (MQ=255) ttcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGc > 1:1395406/1‑76 (MQ=255) tcCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGcc < 1:126624/76‑1 (MQ=255) tcCCAGGCGAGTCTGAGTATATGAAAGACGAGCATTTGGTATCATCATCCCTGAATT‑CAGAGATGAAATTGTGGcc > 1:3403268/1‑76 (MQ=255) cccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCa < 2:3157708/76‑1 (MQ=255) cccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCa < 2:3153532/76‑1 (MQ=255) ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAc > 2:5028695/1‑76 (MQ=255) ccAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCAc < 2:4010210/76‑1 (MQ=255) cAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACt < 2:5211171/76‑1 (MQ=255) aGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa < 2:4778293/62‑1 (MQ=255) aGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGa > 1:4778294/1‑62 (MQ=255) aGGCGAGTCGGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTc < 2:3159788/76‑1 (MQ=255) ggCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCa > 2:1622891/1‑76 (MQ=255) gCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGCGATTAAACTTTGGCCCCTCAc < 1:1366838/76‑1 (MQ=255) gCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAc > 1:1253071/1‑76 (MQ=255) gCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAc < 2:4076339/76‑1 (MQ=255) gCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCAc < 1:594075/76‑1 (MQ=255) cGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACg < 1:5500092/76‑1 (MQ=255) gAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGa > 2:2675173/1‑76 (MQ=255) gTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGt > 1:2804214/1‑76 (MQ=255) gTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGt < 1:2695185/76‑1 (MQ=255) tCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTg < 2:162742/76‑1 (MQ=255) tGAGAATATGAAAGCCGCGCATTTGCTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGCGGc > 2:3899549/1‑76 (MQ=255) gAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGcc > 2:5238029/1‑76 (MQ=255) aGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTg < 1:1417069/58‑1 (MQ=255) aGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTg > 2:1417069/1‑58 (MQ=255) tataTGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttt > 2:4937059/1‑76 (MQ=255) tataTGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttt > 1:5143366/1‑76 (MQ=255) tataTGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttt > 2:4989591/1‑76 (MQ=255) tataTGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttt > 1:4384157/1‑76 (MQ=255) atatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCtttt > 2:2868969/1‑76 (MQ=255) tatGAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCttttt < 1:1622891/76‑1 (MQ=255) gAAATACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGAGGAAAGTTTGGACACGCACGAGTGGCCTttttctt < 1:2669151/76‑1 (MQ=255) gAAAGACGCGCATTTGTTATCATCATCCCTGAATT‑CGGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttctt < 1:2631046/76‑1 (MQ=255) aaaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGGTGTGAAATTTTGGCCACTCGGGCGTGGCCTttttcttt < 2:2430657/76‑1 (MQ=255) aaaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttt < 2:1555088/76‑1 (MQ=255) aaaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttt > 1:1555088/1‑76 (MQ=255) aaaGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttt > 1:4072096/1‑76 (MQ=255) aGACGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTttttcttttc < 2:2921853/76‑1 (MQ=255) aCGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTg < 2:5109902/76‑1 (MQ=255) aCGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTg > 2:4890833/1‑76 (MQ=255) aCGCGCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTCTTCTTTTCTg > 1:2452892/1‑76 (MQ=255) cgcgCATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGt > 1:2891078/1‑76 (MQ=255) cgcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCa > 2:179462/1‑76 (MQ=255) cgcATTTGTTATCATCAGCCCTGAATT‑CAGAGATGAAATTTTGGCAAATCAAGAGTCACATTGTTCTTTTCTGTCa > 1:3711621/1‑76 (MQ=255) gcATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAg < 1:4743959/76‑1 (MQ=255) cATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGt < 1:1332547/72‑1 (MQ=255) cATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGt > 2:1332547/1‑72 (MQ=255) cATTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAgg > 2:4877751/1‑76 (MQ=255) aTTTGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGc > 1:1410479/1‑76 (MQ=255) tttGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCg > 2:221954/1‑76 (MQ=255) tttGTTATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCg > 2:3765461/1‑76 (MQ=255) ttATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGtt > 2:2924316/1‑76 (MQ=255) tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttt < 2:4072095/76‑1 (MQ=255) tATCATCATCCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttt > 2:4791725/1‑76 (MQ=255) tcatcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGttttt < 1:2973815/76‑1 (MQ=255) catcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTc < 1:3484629/76‑1 (MQ=255) catcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTc < 2:3415810/76‑1 (MQ=255) catcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTc < 1:1968307/76‑1 (MQ=255) catcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTc > 1:935670/1‑76 (MQ=255) ctcatcCCTGAA‑AGCAGAGATGACATTTTGGCCGCTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTcc < 2:816391/75‑1 (MQ=255) tcatcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGTGTGTATTTCCa > 2:4229122/1‑76 (MQ=255) catcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAg < 1:5438653/76‑1 (MQ=255) atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGc > 2:301617/1‑76 (MQ=255) atcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGc > 2:3899393/1‑76 (MQ=255) tcCCTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCCGcc > 2:5757247/1‑76 (MQ=255) cccTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCATGCGTGTTTTTCCAGCca > 2:4421122/1‑76 (MQ=255) ccTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCcac < 2:2891078/76‑1 (MQ=255) ccTGAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCcac < 2:5725123/76‑1 (MQ=255) tGAATT‑CAGAGTTGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCacac > 1:3283932/1‑76 (MQ=255) gAATT‑CAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACAcc < 1:179462/76‑1 (MQ=255) | ATTTTCTGAACTCTTTCTTCCCAGGCGAGTCTGAGTATATGAAAGACGCGCATTTGTTATCATCATCCCTGAATTCCAGAGATGAAATTTTGGCCACTCACGAGTGGCCTTTTTCTTTTCTGTCAGGCGTGTTTTTCCAGCCACACC > NC_000913/2812783‑2812929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |