| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,820,144 | Δ1 bp | intergenic (+24/+18) | b4542 → / ← oraA | hypothetical protein/OraA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,820,143 | 0 | G | . | 99.0% | 419.9 / ‑3.0 | 95 | intergenic (+23/+19) | b4542/oraA | hypothetical protein/OraA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (61/33); total (62/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
CCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC > NC_000913/2820069‑2820214 | caGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgta < 1:102206/76‑3 (MQ=255) caGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgta < 1:5303740/76‑3 (MQ=255) caGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgta < 2:2897182/76‑3 (MQ=255) aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgtaa > 1:1497595/1‑73 (MQ=255) aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgtaa < 1:2111950/76‑4 (MQ=255) aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgtaa > 2:1815274/1‑73 (MQ=255) cTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTaaaa < 1:5646949/76‑1 (MQ=255) tCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAAt < 1:4609226/76‑1 (MQ=255) tCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAAt > 2:748212/1‑76 (MQ=255) tCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAAt > 2:2102323/1‑76 (MQ=255) tCCAGCGTGTCTTAACCGCCGGGCTGGGAACTGAAAAGTGGGAATAAGATAAGCTTTCTTGACTGGGAA‑GTAAAAt > 1:220698/1‑76 (MQ=255) tCCAACGTGTCTGAACAGCCGAGATGGGAAATGAAAAGTGGGAATAAGATAAGCTTTCTTGACTGGCAA‑GTaaaac > 1:810043/1‑75 (MQ=255) cccAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAAt < 2:5078866/75‑1 (MQ=255) aGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATAcc > 1:1085849/1‑76 (MQ=255) aGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATAcc < 1:1782490/76‑1 (MQ=255) gCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCg > 1:1724315/1‑76 (MQ=255) ggtgtCTAAGCCGCCGTTCTGGTAACGGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATCCCGt < 2:2215166/75‑1 (MQ=255) cGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATCAGTTATCTTGACTGGGAA‑GTAAAATACCGt < 1:1815274/76‑1 (MQ=255) cGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGt < 1:2628768/76‑1 (MQ=255) cGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGt > 2:459442/1‑76 (MQ=255) cGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGt < 2:2954139/76‑1 (MQ=255) gtgtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTa > 2:375093/1‑76 (MQ=255) gtgtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTa > 2:2877056/1‑76 (MQ=255) tgtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTAt > 1:38823/1‑76 (MQ=255) gtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATg < 1:222880/76‑1 (MQ=255) ncTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTATTGACTGGGAA‑GTACAATACCGTATga > 1:4346832/2‑75 (MQ=255) cTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCg < 1:5092124/76‑1 (MQ=255) cTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCg > 1:1121306/1‑76 (MQ=255) cTTAACCGCCGGGCTGGCAACTGAAAAGTGGGAATAAGATAAGCTTTCTTGACTGGGAA‑GTAACATACCGTATGCg > 2:4499672/1‑76 (MQ=255) cTTAACCGCCGGGCTGGAAACTGAAAAGTGCGAATAAGATAAGCTTTCTTGACTCGGAA‑GTAAAATACCGTATGCg > 2:4514408/1‑76 (MQ=255) tAACCGCCGGGCCGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGtt < 1:1261665/76‑1 (MQ=255) tAACCGCCCGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGtt > 2:2036907/1‑76 (MQ=255) ccgccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAg < 2:20266/76‑1 (MQ=255) cgccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAgc > 2:2615361/1‑75 (MQ=255) gccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTc > 1:3371076/1‑76 (MQ=255) gccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTc > 1:2099255/1‑76 (MQ=255) gccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTc < 2:2021296/76‑1 (MQ=255) cgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCgg > 2:5000716/1‑76 (MQ=255) cgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCgg > 2:3467490/1‑76 (MQ=255) gggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGc > 2:1324167/1‑76 (MQ=255) gggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGc > 1:3205301/1‑76 (MQ=255) gggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGc > 2:2407045/1‑76 (MQ=255) gggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGc > 2:736390/1‑76 (MQ=255) tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCaaaa < 1:5534843/76‑1 (MQ=255) ggTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAt > 1:774894/1‑76 (MQ=255) ggTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAt > 2:5110599/1‑76 (MQ=255) tAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAttt > 1:3979575/1‑76 (MQ=255) aCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCg > 1:267523/1‑76 (MQ=255) aCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCg > 1:1968125/1‑76 (MQ=255) aCTGAAAAGTGGGAAGAAGCTAAGTTTTCTTGACTGTGAA‑GTAAAATACCGTCTGCGTTCCGTCGACAAAAattac > 1:295186/1‑74 (MQ=255) cTGAAAAGTGGGACTAACATAAGTTTTCTTGACTGGGCA‑GTAACATACCGTATGCGTTCAGTCGGCCAAATTTCGc < 1:3853727/76‑1 (MQ=255) cTGAAAAGGGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGc > 1:4811332/1‑76 (MQ=255) aaGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAt > 2:2625458/1‑76 (MQ=255) aaGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAt > 1:3279933/1‑76 (MQ=255) aaGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAt > 2:3683244/1‑76 (MQ=255) aGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtc < 2:3961058/76‑1 (MQ=255) gTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtct < 2:3469952/76‑1 (MQ=255) tGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtctc > 2:2553826/1‑76 (MQ=255) tGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtctc > 1:141297/1‑76 (MQ=255) gggAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTcc < 1:5683535/76‑1 (MQ=255) ggAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAGTACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAcctcct > 2:5004064/1‑76 (MQ=255) ggAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCt > 2:5125625/1‑76 (MQ=255) aaTAAGATAAGGTTTCTTGACTGGGAA‑GCAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTgg > 2:1560205/1‑76 (MQ=255) taagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat < 1:1987450/76‑1 (MQ=255) taagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat > 1:2650900/1‑76 (MQ=255) aagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGata < 1:32144/76‑1 (MQ=255) aagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGata < 1:4957536/76‑1 (MQ=255) aagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGata > 2:2911820/1‑76 (MQ=255) agataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGTGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGatat < 1:3381155/76‑1 (MQ=255) gataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATc > 2:1805155/1‑76 (MQ=255) gataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATc > 1:4409443/1‑76 (MQ=255) ataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCt > 2:4019093/1‑76 (MQ=255) ataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCt > 1:5697458/1‑76 (MQ=255) cgTTTTCTTGACTGGGAA‑GTCAAATACCGTATGCGTTCAGTCGGCACAATTTCGCCAAATCTCCTGGATATCTTcc < 2:501538/75‑1 (MQ=255) gTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCa < 2:859453/76‑1 (MQ=255) gTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCa > 1:3086440/1‑76 (MQ=255) ttttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCAt < 1:2859746/76‑1 (MQ=255) tttCTTGACTGGGAAGG‑AAAATACAGTATGAGTTCAGGCGGAAAAATTGAGCCAAATCGCCTGGGTAGATTCCAta > 1:1043701/1‑75 (MQ=255) tttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCGGTCGGGAAAATTTCGCCAAATCTCCTGGATATCTTCCATc < 2:2644550/76‑1 (MQ=255) tttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATc > 2:4963080/1‑76 (MQ=255) tttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATc > 1:1935510/1‑76 (MQ=255) tttCTTAACTGGGAA‑GTAAAATACCGGATGCGGTCAGTCGGCAAAATGTCGACAAATCTTCTGGATATCGTCCATc > 1:2710044/1‑76 (MQ=255) ttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCa > 2:4341606/1‑76 (MQ=255) cTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGa < 1:5256091/76‑1 (MQ=255) ttGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGCATATCTTCCAGCAGAt > 2:3560497/1‑76 (MQ=255) tGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa < 2:1724315/76‑1 (MQ=255) tGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa > 1:1224544/1‑76 (MQ=255) tGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa > 1:1365777/1‑76 (MQ=255) tGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa < 1:1456678/76‑1 (MQ=255) tGACTGGGAA‑GTAAAATACCGTATGCGCTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa > 1:2535130/1‑76 (MQ=255) gACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAg < 2:3135208/76‑1 (MQ=255) cTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGcc < 1:2911820/76‑1 (MQ=255) cTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGcc > 2:5007414/1‑76 (MQ=255) cTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGcc > 1:5380562/1‑76 (MQ=255) tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa < 1:4213867/76‑1 (MQ=255) tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa < 1:5196901/76‑1 (MQ=255) tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa > 2:5400632/1‑76 (MQ=255) tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa > 2:163342/1‑76 (MQ=255) gggAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc > 1:1143798/1‑76 (MQ=255) gggAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc > 2:867511/1‑76 (MQ=255) | CCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAC > NC_000913/2820069‑2820214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |