| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,236,177 | Δ1 bp | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,236,176 | 0 | G | . | 98.4% | 525.8 / ‑0.7 | 121 | intergenic (+238/‑46) | ygjR/ygjT | hypothetical protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base . (67/52); total (67/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 129 total aligned reads displayed.
ACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGC > NC_000913/3236101‑3236246 | aCGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTg > 1:5299433/1‑76 (MQ=255) cGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTga < 2:3102856/76‑2 (MQ=255) gCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgac > 2:3817194/1‑74 (MQ=255) gCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgac < 1:4242914/76‑3 (MQ=255) gCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTACCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgac < 1:2570193/76‑3 (MQ=255) cAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgacg > 2:3292491/1‑73 (MQ=255) gACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTc < 1:3902625/76‑1 (MQ=255) aCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCt > 1:3324067/1‑76 (MQ=255) aCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCt > 1:3037280/1‑76 (MQ=255) cGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCtt > 1:1288386/1‑76 (MQ=255) tATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTcc < 1:3258760/76‑1 (MQ=255) tATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTcc > 2:4298147/1‑76 (MQ=255) tATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTcc > 1:3060065/1‑76 (MQ=255) tATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTcc < 2:206612/76‑1 (MQ=255) aTTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCg < 2:5480238/76‑1 (MQ=255) aTTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCg < 2:3897604/76‑1 (MQ=255) ntCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTcccc > 2:1351947/2‑74 (MQ=255) tCCTTTTTTGTTGTCAGTGCGACCTTGCCGGAAGGCTAGTTCTATGCATAAACCGCATCGGCTGG‑CGTCTTCCgcc < 1:2446087/76‑3 (MQ=255) tCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATTCATAAAAAGCAGCGGCT‑GACGTCTTCCGAc < 1:720977/76‑1 (MQ=255) tCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGAc < 2:1812433/76‑1 (MQ=255) tCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGAc < 2:4647222/76‑1 (MQ=255) ccTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCCACg > 2:2168181/1‑76 (MQ=255) ttttttGTTGTAGGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGtt < 2:846715/76‑1 (MQ=255) ttttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAGAAAGCAGCGGCT‑GACGTCTTCCGACGtt < 1:1134515/76‑1 (MQ=255) ttttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGtt < 2:1811091/76‑1 (MQ=255) ttttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGtt > 1:5609835/1‑76 (MQ=255) ttttttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTATATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGtt > 1:5666152/1‑76 (MQ=255) tcttgttgTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTgg < 1:1414520/74‑1 (MQ=255) tttGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGc > 1:4556517/1‑76 (MQ=255) ttgttgTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGcc < 1:3095473/76‑1 (MQ=255) gttgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGt > 2:4266518/1‑76 (MQ=255) ttgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGtt > 1:4909058/1‑76 (MQ=255) ttgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGtt < 1:1563377/76‑1 (MQ=255) ttgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACCTTGGCCggt > 2:5084761/1‑74 (MQ=255) tgtAAGTGAGACCTTGCCGTAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttt < 1:5015473/76‑1 (MQ=255) tgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttt < 2:1456641/76‑1 (MQ=255) tgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttt > 1:3866576/1‑76 (MQ=255) aaGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGtttttt < 1:4880793/76‑1 (MQ=255) aaGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGGTGGCCGgttttt > 1:1702642/1‑76 (MQ=255) aGTGAGGCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttttttt > 1:1224912/1‑76 (MQ=255) gTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGtttttttt > 1:3494129/1‑75 (MQ=255) tGAGACGTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAt < 2:3626301/76‑1 (MQ=255) tGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAt > 1:4217994/1‑76 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtt > 2:2275703/1‑75 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtg < 1:4571553/76‑1 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtg > 2:2364110/1‑76 (MQ=255) agcccTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtgt < 2:74329/73‑1 (MQ=255) gcccTTGCGGGAAGTCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtgtg < 2:3350450/74‑1 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtgtg > 1:1610246/1‑76 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtgtg > 2:4438188/1‑76 (MQ=255) aCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGGTTTTTTATgtgt > 2:332609/1‑76 (MQ=255) ccTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTa < 2:2324606/76‑1 (MQ=255) cTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTaa < 1:2289908/76‑1 (MQ=255) cTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTaa > 2:3857811/1‑76 (MQ=255) ttGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTCTAAg > 2:3533310/1‑76 (MQ=255) tGCCGGCAGGCGAGGTCTAGGCATAAAAAGCAGCGGCT‑GACGTCTTCCGCCGTTGGCCGTTTTTTTATGTGTAAgg < 2:5580565/76‑1 (MQ=255) tGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAgg > 1:1880008/1‑76 (MQ=255) cGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAAc > 2:3942815/1‑76 (MQ=255) ggAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACt < 1:2973978/76‑1 (MQ=255) aaGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTc > 1:3217298/1‑76 (MQ=255) aaGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTc > 1:2340446/1‑76 (MQ=255) cggCGAGGTCGATGCATAAAAAGCAGCGACT‑TACGTCTTCCGACGCTCGCCGTTTTTTCATTTTGCAGGAACctct > 2:4756375/2‑76 (MQ=255) aGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATTTGTAAGGAAATTCt > 2:4753697/1‑76 (MQ=255) aGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCt < 2:1731098/76‑1 (MQ=255) aGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCt > 2:3045600/1‑76 (MQ=255) ggCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTa < 2:5461505/76‑1 (MQ=255) ggCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTa < 1:4266519/76‑1 (MQ=255) ggCGAGGTCTATGCATAAAAAGCAGCGGCT‑GAAGTCATAAGCCGTCGGCCGTATTTTTCTGTGTAAGGCACTTGTa > 2:2982501/1‑76 (MQ=255) ggCGAGGTCTATGCATAAAAAGCAGCAGCT‑GACGTCATCCGACGTCGCACGCTTTTTTATCTGTAAGGAACTCCtt > 2:5535597/1‑75 (MQ=255) gagAGGTCTATGCATCAAAAGCAGCCGCT‑GACGTCTTCCGACGTTGGCCGTTTTCTTCTGTGTCAGGAACTTCTAt > 1:3686394/3‑76 (MQ=255) cGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATg > 1:575264/1‑76 (MQ=255) gAGCTCTATGCACACCAAGCAGCGGCT‑GACGTCTTCCGGCGTTGGCCGTTTTTTTATGTGTACGGAACTTCTATGa < 2:1614795/76‑1 (MQ=255) aGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGaa > 2:3472154/1‑76 (MQ=255) aGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGaa > 2:3276256/1‑76 (MQ=255) gTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATa < 1:4438189/76‑1 (MQ=255) tCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTTAGGAACTTCTATGAATAc > 1:4152088/1‑76 (MQ=255) tCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATAc > 1:1425720/1‑76 (MQ=255) tCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATAc > 2:2583135/1‑76 (MQ=255) cTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACt > 2:4591353/1‑76 (MQ=255) cTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGCAAAGAACCTCTATTAATCCt > 2:4698289/1‑76 (MQ=255) tATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACt > 2:4942085/1‑75 (MQ=255) tATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTg < 2:2671094/76‑1 (MQ=255) aTGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGt > 1:1395658/1‑76 (MQ=255) aTGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGCTTTTTTATGTGTAAGGAACTTATATGAATACTGt > 1:4789528/1‑76 (MQ=255) tGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTc > 1:5714900/1‑76 (MQ=255) gCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATAATGTCg > 1:3717285/1‑76 (MQ=255) aTAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGc < 1:2640859/76‑1 (MQ=255) tAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCa < 1:1105982/76‑1 (MQ=255) aaaaaGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGccc > 2:722439/1‑74 (MQ=255) aaaaGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACg < 1:2725103/76‑1 (MQ=255) aaGCAGCGGC‑GGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGcc < 2:5727407/76‑1 (MQ=255) agcagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGACTACTGTCGGGccgccg > 2:594008/1‑76 (MQ=255) agcagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCg > 2:4439986/1‑76 (MQ=255) gcagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGt < 2:5848698/76‑1 (MQ=255) cagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGtt < 2:4934717/76‑1 (MQ=255) agcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTg < 1:5209934/76‑1 (MQ=255) gcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTATGGAACTTCTATGAATACTGTCGGCACGCCGTTGc < 1:417113/76‑1 (MQ=255) gcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGc < 2:4065903/76‑1 (MQ=255) gcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGc > 1:4834259/1‑76 (MQ=255) gcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGc > 1:3330450/1‑76 (MQ=255) | ACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGC > NC_000913/3236101‑3236246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |