| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,236,758 | Δ1 bp | coding (537/966 nt) | ygjT → | putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,236,757 | 0 | T | . | 96.7% | 523.0 / 9.7 | 123 | coding (536/966 nt) | ygjT | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base . (69/49); total (72/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 128 total aligned reads displayed.
CGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AG‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCCA > NC_000913/3236683‑3236828 | cGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATAAGGCATTGGCGAAA‑AGCC‑NNTGGTGCGCTGGCTACGCGGt < 1:1705332/76‑1 (MQ=255) gCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGGtca < 1:3814473/76‑3 (MQ=255) tGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCAttt < 1:3856441/76‑1 (MQ=255) ggAAGATGGGGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCAttt < 2:3229131/75‑1 (MQ=255) gAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTg > 1:5336535/1‑76 (MQ=255) agagGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcg < 2:3227959/76‑1 (MQ=255) aGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcg > 2:3127951/1‑76 (MQ=255) aGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcc > 2:4777973/1‑75 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc > 1:5049455/1‑76 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa > 1:1084157/1‑76 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa > 1:2870587/1‑76 (MQ=255) tGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCAt < 1:2574777/76‑1 (MQ=255) ggCGCGCGCCCATGAAGAGGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATg < 2:5632012/76‑1 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAc > 1:2430296/1‑76 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAc > 1:5786023/1‑76 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AG‑CAGCTGGTGCGCTGGCTACGCGG‑GCATTGGCGCAtcgc > 1:645163/1‑73 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc > 2:4375270/1‑76 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc < 1:5118025/76‑1 (MQ=255) gcTCGCCCATGAAGAGGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc < 1:3084774/76‑1 (MQ=255) cTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGcccc > 2:2263358/1‑75 (MQ=255) cTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCg > 2:4314092/1‑76 (MQ=255) cTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCg < 1:4458816/76‑1 (MQ=255) tCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCCTTACCGa > 2:1775365/1‑76 (MQ=255) tCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGa > 1:1754491/1‑76 (MQ=255) ccGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGa < 1:632907/75‑1 (MQ=255) cGCCCAGGAAGATGAATCGGGCATGGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGac < 2:2995667/76‑1 (MQ=255) gCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca > 2:3822061/1‑76 (MQ=255) gCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca > 2:2742635/1‑76 (MQ=255) ccccATGAAGATGCATCAGGCATTGCCGACA‑ATCC‑TCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca < 1:5790691/75‑1 (MQ=255) cccATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGCGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGacac > 2:3689359/1‑76 (MQ=255) ccATGAGGGTGAATCAGGCATGGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACAcc < 2:745376/76‑1 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACAcc > 1:5214979/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑GCATTTGCGCCTCACCGAcccc > 2:620355/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGC‑GATCATTTGCGCATGACCGACAcc > 1:1957900/1‑76 (MQ=255) aTGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCAt < 1:492998/76‑1 (MQ=255) aTGAAGAGGAATCGGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCAt < 2:3809038/76‑1 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:3661959/1‑76 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:3426570/1‑76 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:2859897/1‑76 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:4528884/1‑76 (MQ=255) agagGAATCAGGCATGGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:2263313/76‑1 (MQ=255) aGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:3718913/76‑1 (MQ=255) aTGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACaa > 1:1750397/1‑76 (MQ=255) aTGAACCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACaa < 2:5305149/76‑1 (MQ=255) tGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAAc > 1:2411399/1‑76 (MQ=255) tGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAAc < 1:5799894/76‑1 (MQ=255) gAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACCCCATCGACAACg > 2:2747109/1‑76 (MQ=255) gAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACg > 1:3376095/1‑76 (MQ=255) actCAGACATGGGCGACAGTG‑C‑TCTGGTGCGCTGGCAACGC‑GTTCATTTGCGCCTGCCCGACACCATCGACAACGa < 1:570939/74‑1 (MQ=255) aTCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATTACCGACACCCACGACAACGAg > 1:2805253/1‑76 (MQ=255) aTCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAg > 1:732044/1‑76 (MQ=255) cAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGC‑CTGCATTTGCGCATGAACGACACCATCGACAACGATCa > 1:3995310/1‑76 (MQ=255) aGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGGTCC‑TTTGCGCATGAACGACACCATCGACAACGAGCAt > 1:5842970/1‑76 (MQ=255) aGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAt > 2:2325322/1‑76 (MQ=255) ggCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAtt > 1:1073020/1‑76 (MQ=255) gCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAttt < 1:5076018/76‑1 (MQ=255) aTTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCCTCGACAACGAGCATTTCt > 2:2998489/1‑76 (MQ=255) aTTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt < 1:82894/76‑1 (MQ=255) aTTGGCGACA‑AGCC‑GCTGGGGCGCTGGCTACGCGG‑TCATTTGTGCATGACCGACACCCACGACAAAGAGAAATTCt > 1:2627639/1‑76 (MQ=255) ttGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCtt < 1:3553471/76‑1 (MQ=255) ttGGCAACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCtt < 1:2217312/76‑1 (MQ=255) tGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCttt > 1:1004348/1‑76 (MQ=255) ggCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtg > 2:2268593/1‑76 (MQ=255) ggCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtg > 1:3973157/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc > 1:3335283/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc > 1:4131595/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc < 1:1852365/76‑1 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc > 2:4144264/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTATTTGTGc > 2:3122391/1‑76 (MQ=255) aCA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCg > 1:5179992/1‑76 (MQ=255) gcc‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAg < 1:2665541/74‑1 (MQ=255) cc‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGa > 2:2936702/2‑76 (MQ=255) gtGGTGCGCTGGCTACTCTG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATg < 2:5842969/75‑1 (MQ=255) ggggcgcGGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGa < 2:2440385/73‑1 (MQ=255) tGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGAtt > 1:1399045/1‑76 (MQ=255) gcgcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTg > 2:5284538/1‑76 (MQ=255) gcgcTGGCAACGCGG‑CCATTTGCGCATCACCGACACCATCGACAACGAGCATCTGGTTGTGAGTAAGAATGGACTg > 2:3015587/1‑76 (MQ=255) ggcTGGGTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGc < 2:4993737/75‑1 (MQ=255) cgcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGc > 2:1913208/1‑76 (MQ=255) gcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTCAGAATGGATTGCt > 1:3656034/1‑76 (MQ=255) gcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCt > 1:3613376/1‑76 (MQ=255) gcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCt > 1:1127378/1‑76 (MQ=255) gcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCt > 2:2452332/1‑76 (MQ=255) cTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTg > 1:1946549/1‑76 (MQ=255) tGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGt > 2:1670319/1‑76 (MQ=255) tGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGt > 1:3815620/1‑76 (MQ=255) tGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGt < 1:5174202/76‑1 (MQ=255) ggCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTa > 2:2811783/1‑76 (MQ=255) ggCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTa > 1:856578/1‑76 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc > 1:4360029/1‑76 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc < 2:2248121/76‑1 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc > 2:5552786/1‑76 (MQ=255) cTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACg < 2:4670933/76‑1 (MQ=255) cTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACg < 1:4516244/76‑1 (MQ=255) tACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGc > 1:4916888/1‑76 (MQ=255) tACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACAAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGc < 2:1965841/76‑1 (MQ=255) cgcgG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCca < 2:4360028/76‑1 (MQ=255) cgcgG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCca > 2:2413615/1‑76 (MQ=255) cgcgG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCca > 1:523817/1‑76 (MQ=255) cgcgTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCca < 1:635032/73‑1 (MQ=255) | CGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AG‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCCA > NC_000913/3236683‑3236828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |