Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,253,742 Δ1 bp coding (551/552 nt) yhaNM ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,253,7410G.99.3% 595.2 / ‑2.6 136coding (552/552 nt)yhaNMhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base . (82/52);  total (84/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 147 total aligned reads displayed.

TTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCAC  >  NC_000913/3253666‑3253812
                                                                           |                                                                       
ttCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCg                                                                         >  2:3032211/1‑76 (MQ=255)
ttCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCg                                                                         >  2:647278/1‑76 (MQ=255)
ttCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCg                                                                         <  1:3996698/76‑1 (MQ=255)
  cgcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCCGCGTCgtt                                                                       >  2:4475359/1‑74 (MQ=255)
  cgcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                       >  2:859521/1‑74 (MQ=255)
  cgcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                       <  2:3434253/76‑3 (MQ=255)
  cgcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                       <  1:2333750/76‑3 (MQ=255)
     ggAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTg                                                                   >  1:4648822/1‑76 (MQ=255)
     ggAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTg                                                                   >  1:3139483/1‑76 (MQ=255)
         tCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGaaa                                                               <  1:3980313/76‑1 (MQ=255)
          caagaATAAAGCGGATCGCCGCAAACGAGAGTTCCTTGAACAACTTCAGGATCTCAGCCAGCGGCGTTATGGAAAg                                                              >  1:4462660/3‑76 (MQ=255)
           gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGc                                                             >  1:2507393/1‑76 (MQ=255)
           gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGc                                                             >  2:3993187/1‑76 (MQ=255)
           gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGc                                                             >  1:5681562/1‑76 (MQ=255)
            agaATAAAGCGGATCGCCGCAACCGGGACTTCACTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGAAAAGCa                                                            <  1:5655628/76‑1 (MQ=255)
            agaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGCCGTTCTGGAAAGCa                                                            >  2:2206414/1‑76 (MQ=255)
              aaTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCAcc                                                          >  2:1811078/1‑76 (MQ=255)
               aTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCg                                                         <  2:563687/76‑1 (MQ=255)
                tAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTACGGAAAGCAcctc                                                        >  2:2975261/1‑74 (MQ=255)
                 aaaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTc                                                       >  1:5640330/1‑76 (MQ=255)
                 aaaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTc                                                       >  1:1086296/1‑76 (MQ=255)
                    gCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGc                                                    <  1:1010498/76‑1 (MQ=255)
                    gCGGATCGCCGCAAACGGGACCTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGc                                                    <  2:5016317/76‑1 (MQ=255)
                     gggATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCg                                                   <  2:24849/75‑1 (MQ=255)
                      ggATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCgg                                                  >  1:1790105/1‑76 (MQ=255)
                      ggATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCgg                                                  >  1:5343710/1‑76 (MQ=255)
                      ggATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCGCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCgg                                                  >  2:4982170/1‑76 (MQ=255)
                       gATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCggg                                                 >  1:417373/1‑75 (MQ=255)
                       gATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGga                                                 <  1:984754/76‑1 (MQ=255)
                        aTCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgag                                                >  1:3324389/1‑76 (MQ=255)
                         tCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgaga                                               >  2:464676/1‑76 (MQ=255)
                         tCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgaga                                               <  1:5203544/76‑1 (MQ=255)
                         gcgccgcAAACGGGACTTCATTGACGAACTTCAGGATCCCAGCCCGCGTTGTTCTGGAAAGCACCGCCAgaggagc                                               >  2:5306704/2‑75 (MQ=255)
                          cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGAc                                              <  2:5681560/76‑1 (MQ=255)
                          cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGCCAGCGGAGAc                                              >  2:4258503/1‑76 (MQ=255)
                           gccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGGGAct                                             >  1:829207/1‑76 (MQ=255)
                            ccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGActc                                            >  2:2498678/1‑76 (MQ=255)
                             cgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGActct                                           <  1:4603002/76‑1 (MQ=255)
                             cgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGActct                                           >  1:2898956/1‑76 (MQ=255)
                             cgcAAACGGGACTTCATCGACGAAATTCAGGATCTCAGCCAGCGTCGGTCGGGAAAGCACCGGAAGCGGCGActct                                           >  2:792613/1‑76 (MQ=255)
                              gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCtt                                          <  1:4616119/76‑1 (MQ=255)
                              gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCtt                                          <  2:1142575/76‑1 (MQ=255)
                              gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCtt                                          >  1:2617718/1‑76 (MQ=255)
                               cAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                         >  1:5208432/1‑76 (MQ=255)
                               cAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                         >  1:4279625/1‑76 (MQ=255)
                               cAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                         >  2:4298005/1‑76 (MQ=255)
                               cAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                         <  1:647278/76‑1 (MQ=255)
                                aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGCCACCGGCGACACttcc                                        >  2:195888/1‑74 (MQ=255)
                                 aaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCt                                       >  1:4186485/1‑76 (MQ=255)
                                 aaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACCCtttcc                                       >  2:5358202/1‑73 (MQ=255)
                                  aCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                      <  2:3700631/76‑1 (MQ=255)
                                  aCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                      <  2:3339276/76‑1 (MQ=255)
                                     ggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGCGACTCTTGCTCGcc                                   >  1:4756751/1‑76 (MQ=255)
                                     ggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGcc                                   >  1:653716/1‑76 (MQ=255)
                                     ggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGcc                                   >  2:2691509/1‑76 (MQ=255)
                                     ggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGcc                                   >  1:4707468/1‑76 (MQ=255)
                                      gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGccc                                  >  2:5307264/1‑76 (MQ=255)
                                      gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGccc                                  >  2:798555/1‑76 (MQ=255)
                                       gcgtCATGGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCct                                 <  2:862007/73‑1 (MQ=255)
                                       aCTTCATTGACGGACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCct                                 <  2:5208431/76‑1 (MQ=255)
                                       aCTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCct                                 >  1:3569277/1‑76 (MQ=255)
                                       aCTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCct                                 <  1:1631492/76‑1 (MQ=255)
                                        cTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGccccc                                >  2:1030611/1‑74 (MQ=255)
                                           cATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGc                             >  1:1240184/1‑76 (MQ=255)
                                             ttGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCca                           <  2:2748536/76‑1 (MQ=255)
                                             ttGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCca                           >  1:147421/1‑76 (MQ=255)
                                              tGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcac                          >  1:2942554/1‑76 (MQ=255)
                                              tGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcac                          <  1:1008900/76‑1 (MQ=255)
                                               gACGAACTTCAGGATCTCAGCCAGGGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcaca                         <  2:733663/76‑1 (MQ=255)
                                                aCGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcacac                        <  1:4366684/76‑1 (MQ=255)
                                                  gAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCacacac                      >  2:1469320/1‑76 (MQ=255)
                                                  gAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCacacac                      >  2:4512759/1‑76 (MQ=255)
                                                  gAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCacacac                      <  2:3273650/76‑1 (MQ=255)
                                                   aaCTTCAGTATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACg                     <  1:3308304/76‑1 (MQ=255)
                                                   aaCTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCccacacc                     >  2:5443110/1‑75 (MQ=255)
                                                   aaCTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACg                     >  1:3608427/1‑76 (MQ=255)
                                                   aaCTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACg                     <  1:5787087/76‑1 (MQ=255)
                                                      ttCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCct                  <  1:454986/76‑1 (MQ=255)
                                                      tgcAGGATCGCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCct                  <  1:88892/74‑1 (MQ=255)
                                                        cAGGAGCTCAGCCAGCGTCGTGCGGGAAAGCACCGTCATCGGAGACTGTTGCTCGCCCTCTGCCACCCACGCctgc                <  2:3250589/76‑1 (MQ=255)
                                                         aGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCctgct               <  1:801515/76‑1 (MQ=255)
                                                         aGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCctgct               >  1:1872415/1‑76 (MQ=255)
                                                          ggATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCctgctg              <  2:1446816/76‑1 (MQ=255)
                                                          ggATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCATCTGACACACACGCctgctg              >  1:5522830/1‑76 (MQ=255)
                                                           gATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTgg             >  1:2333438/1‑76 (MQ=255)
                                                             tctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCCCCCACGCCTGCTGGGt           >  2:2579396/1‑76 (MQ=255)
                                                             tctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGt           <  1:5530183/76‑1 (MQ=255)
                                                              ctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTa          <  1:977952/76‑1 (MQ=255)
                                                               tcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTaa         <  1:1211674/76‑1 (MQ=255)
                                                                cagccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTaaa        >  2:3989860/1‑76 (MQ=255)
                                                                cagccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTaaa        <  2:4254568/76‑1 (MQ=255)
                                                                 agccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAac       <  2:2159485/76‑1 (MQ=255)
                                                                 agccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAac       >  1:3445635/1‑76 (MQ=255)
                                                                 agccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCACCCTCTGCCACACACGCCTGCTGTGTaaaa       >  1:3481750/1‑75 (MQ=255)
                                                                   ccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacac     <  1:302768/76‑1 (MQ=255)
                                                                    cagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacacc    <  1:3089493/76‑1 (MQ=255)
                                                                     agcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACCCGCCTGCTGGGTAAacacca   >  2:321153/1‑76 (MQ=255)
                                                                     agcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGCAAacacca   >  2:4405406/1‑76 (MQ=255)
                                                                      gcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacaccac  <  1:5339596/76‑1 (MQ=255)
                                                                      gcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCCGCTGGGTAAacacccc  >  2:524177/1‑74 (MQ=255)
                                                                           |                                                                       
TTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCAC  >  NC_000913/3253666‑3253812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: