BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,255,594	Δ1 bp	coding (4/1278 nt)	yhaO ←	putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,255,593	0	G	.	100.0%	456.5 / NA	100	coding (5/1278 nt)	yhaO	putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (45/55); total (45/55)

Only 100 of 111 total aligned reads displayed.

ATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTC  >  NC_000913/3255518‑3255665

aTACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACGCGCTCTCACTCATTCCAg                                                                          >  1:4315115/1‑76 (MQ=255)

 tACTGAAAATGACCAAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgc                                                                         <  2:2885991/76‑2 (MQ=255)

 tACTCATAATCCCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgc                                                                         <  1:1246597/76‑2 (MQ=255)

 tACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgc                                                                         >  2:5014163/1‑75 (MQ=255)

  aCTCATACTCACCCAGCCGGTGTCAGTACTGTCGCATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgcc                                                                        >  2:1178590/1‑74 (MQ=255)

  aCTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGGTCGCTTCTCGCCACTCGCTGTCACTCATTCCAgca                                                                        <  1:3230390/76‑3 (MQ=255)

   cTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgcac                                                                       >  1:402577/1‑73 (MQ=255)

   cTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgcac                                                                       <  2:4241885/76‑4 (MQ=255)

   cTCATAACCCCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAgcac                                                                       <  2:534759/76‑4 (MQ=255)

      aTAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAc                                                                   >  1:2639420/1‑76 (MQ=255)

      aTAATCACCCAGCCGGTGTCAGGACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAc                                                                   <  2:2700228/76‑1 (MQ=255)

       tAATCCCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAcc                                                                  <  2:1522358/76‑1 (MQ=255)

        aaTCCCCCAGCCGGTGGCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAccc                                                                 <  2:5761717/76‑1 (MQ=255)

        aaTCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAccc                                                                 <  1:2906994/76‑1 (MQ=255)

        aaTCACCCAGCCGGTGTCAGGACTGTCGAATTTGATCGCTTCTCGCCACTCGCTGTCAATCATGCCA‑GCACGAccc                                                                 >  1:5185813/1‑76 (MQ=255)

        aaTCACCCAGCCGGTGTCAGGACTGTCGAATTTGAACGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGAccc                                                                 <  2:5365400/76‑1 (MQ=255)

         aTCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccg                                                                <  1:5090500/76‑1 (MQ=255)

          tCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgc                                                               >  2:3549037/1‑76 (MQ=255)

          tCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgc                                                               <  1:4413413/76‑1 (MQ=255)

          tCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgc                                                               >  1:104696/1‑76 (MQ=255)

          tCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgc                                                               <  1:1196197/76‑1 (MQ=255)

          tCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgc                                                               >  2:2591463/1‑76 (MQ=255)

           cACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgcc                                                              <  1:3312681/76‑1 (MQ=255)

           cACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgcc                                                              <  1:3543737/76‑1 (MQ=255)

            ccccAGCCGGTGTCGGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgccg                                                             <  2:3169444/75‑1 (MQ=255)

            ccccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgccg                                                             <  2:2110383/75‑1 (MQ=255)

            aCCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACccgccg                                                             >  1:5760499/1‑76 (MQ=255)

              ccAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCggg                                                           <  1:1591277/76‑1 (MQ=255)

               cAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCgggg                                                          >  1:5040111/1‑76 (MQ=255)

                aGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACCACCCGCCggggc                                                         >  2:55247/1‑75 (MQ=255)

                  ccGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCg                                                       >  1:4979892/1‑76 (MQ=255)

                    ggTGTCAGTCCTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAg                                                                          >  1:3773622/1‑56 (MQ=255)

                    ggTGTCAGTCCTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAg                                                                          <  2:3773622/56‑1 (MQ=255)

                    ggTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGaa                                                     <  1:5657353/76‑1 (MQ=255)

                    ggTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGaa                                                     <  1:692956/76‑1 (MQ=255)

                     gtgtCAGTACTGTCGAATTTGATCGCTTCTCACCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg                                                    <  1:1596466/76‑1 (MQ=255)

                      tgtCAGTCCTGTCGAATTTGACCGCTTCTCTCCACTCGCGCTCGCTCATTCCA‑GCACGCCCCGCCGGGGTCGAAgc                                                   <  1:485840/76‑2 (MQ=255)

                       gtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcg                                                  >  1:3726105/1‑74 (MQ=255)

                       gtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcg                                                  >  1:4940898/1‑74 (MQ=255)

                         cattACAGTCGAAGTGGAACACCTCCCGCCGCTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCG‑AGGCGTc                                               <  1:487869/73‑1 (MQ=255)

                          aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCt                                              >  2:2961639/1‑76 (MQ=255)

                          aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCt                                              >  1:3110281/1‑76 (MQ=255)

                           gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTg                                             >  1:1247932/1‑76 (MQ=255)

                           gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTg                                             <  1:4986068/76‑1 (MQ=255)

                            tACTGTCGATTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGc                                            <  1:2199397/76‑1 (MQ=255)

                             aCTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCa                                           <  1:5592475/76‑1 (MQ=255)

                               tctCGAGTGTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAAt                                         <  2:355273/74‑1 (MQ=255)

                               tGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAAt                                         >  2:1081212/1‑76 (MQ=255)

                               tGTCGAATTTGACCGCTTCTCGCCTGTCGGTCTCACTCATTCCA‑GCGCGGCCCGCCTGGGTCGAA‑GCGTCTGCAAt                                         <  2:353943/76‑1 (MQ=255)

                                gTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATg                                        >  1:3547386/1‑76 (MQ=255)

                                gTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCG‑ACGCGTCTGCAATg                                        >  2:269561/1‑76 (MQ=255)

                                 tCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGa                                       >  1:2530645/1‑76 (MQ=255)

                                 tCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGa                                       <  2:589153/76‑1 (MQ=255)

                                  cGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGAc                                      <  1:63218/76‑1 (MQ=255)

                                   gAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCGCGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACg                                     <  2:5760498/76‑1 (MQ=255)

                                    actttGATCGCTTCTCGCATCTCGCTCTCACTCCTTCCA‑GCACGATACGGCGGGTTCTAA‑GCGTCTGCAATGACGc                                    <  1:3924460/74‑1 (MQ=255)

                                    aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGc                                    <  1:3899594/76‑1 (MQ=255)

                                     aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc                                   >  2:631749/1‑76 (MQ=255)

                                        tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCttt                                <  1:4772403/76‑1 (MQ=255)

                                        tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCttt                                <  1:2861899/76‑1 (MQ=255)

                                         gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa                               >  2:1066736/1‑76 (MQ=255)

                                         gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa                               >  2:3398796/1‑76 (MQ=255)

                                         gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa                               >  1:1378449/1‑76 (MQ=255)

                                         gATCCCTCCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa                               <  2:1084957/76‑1 (MQ=255)

                                          aTCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTAt                              >  2:2170896/1‑76 (MQ=255)

                                             gCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg                           >  2:4883370/1‑76 (MQ=255)

                                             gCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg                           >  2:1098627/1‑76 (MQ=255)

                                              cTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGa                          >  1:2776116/1‑76 (MQ=255)

                                               ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGAt                         >  1:3979067/1‑76 (MQ=255)

                                                tctcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATg                        <  2:4331413/76‑1 (MQ=255)

                                                  tcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGCTGCa                      >  1:3746763/1‑76 (MQ=255)

                                                  tcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCa                      <  2:2005729/76‑1 (MQ=255)

                                                  tcGCCACTCGCTCCCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCa                      >  2:4249379/1‑76 (MQ=255)

                                                   cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCaa                     <  1:1219680/76‑1 (MQ=255)

                                                     ccACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAtt                   >  1:995031/1‑76 (MQ=255)

                                                      cACTCGCTCTCACTCATTCCA‑GCACGCCCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt                  <  2:3355933/76‑1 (MQ=255)

                                                      cACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt                  >  2:1933776/1‑76 (MQ=255)

                                                      cACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt                  <  1:3381408/76‑1 (MQ=255)

                                                       ccTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc                 <  1:1066736/75‑1 (MQ=255)

                                                       ccTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc                 <  1:828991/75‑1 (MQ=255)

                                                        cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTcc                >  1:1293475/1‑76 (MQ=255)

                                                        cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTcc                >  1:5617110/1‑76 (MQ=255)

                                                            ctctCCCTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa            <  2:5404519/76‑1 (MQ=255)

                                                            ctctCACTCATTCCA‑GCGCGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa            <  1:1817326/76‑1 (MQ=255)

                                                            ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa            >  1:3018608/1‑76 (MQ=255)

                                                            ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa            <  1:5370791/76‑1 (MQ=255)

                                                             tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt           <  1:3334806/76‑1 (MQ=255)

                                                             tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt           >  1:4150499/1‑76 (MQ=255)

                                                             tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCAATGCAATTTCCATAAt           >  2:4919626/1‑76 (MQ=255)

                                                              ctcacccaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAtt          >  1:4580703/1‑76 (MQ=255)

                                                               tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCCTAAttt         >  2:469718/1‑76 (MQ=255)

                                                               tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAttt         >  2:2112486/1‑76 (MQ=255)

                                                               tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAttt         <  2:2530645/76‑1 (MQ=255)

                                                                cactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc        >  1:3306062/1‑76 (MQ=255)

                                                                 actcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct       <  2:3892989/76‑1 (MQ=255)

                                                                  ctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCCGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtctc      <  1:2803/76‑1 (MQ=255)

                                                                   tcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCg     <  1:643058/76‑1 (MQ=255)

                                                                    caTTCCA‑GCACGACCCGCGGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc    <  1:2683082/76‑1 (MQ=255)

                                                                      ttCCA‑GCACGACGCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTc  <  2:2919868/76‑1 (MQ=255)

                                                                      ttCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCCTTATTCGATGCAATTTCCATAATTTCTCCCTc  >  2:5477760/1‑76 (MQ=255)

ATACTCATAATCACCCAGCCGGTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTC  >  NC_000913/3255518‑3255665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`