BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,575,446	+G	coding (912/942 nt)	gntR ←	GntR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,575,445	1	.	G	100.0%	367.6 / NA	134	C305R (TGC→CGC)	gntR	GntR
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (82/52); total (82/52)

Only 100 of 147 total aligned reads displayed.

GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACC  >  NC_000913/3575370‑3575515

gATCCGCCCGGTGACAAGGTGAAACCTAAATCTCACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                         <  1:679559/76‑1 (MQ=255)

gATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                         >  2:4782191/1‑76 (MQ=255)

 aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑g                                                                       >  2:2769065/1‑76 (MQ=255)

 aTCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑g                                                                       >  2:3602479/1‑76 (MQ=255)

  tCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑gg                                                                      <  1:2182574/76‑2 (MQ=255)

    cGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg                                                                    >  1:5151565/1‑73 (MQ=255)

    cGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca‑ggcg                                                                    <  1:5267424/76‑4 (MQ=255)

       ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTc                                                                  >  1:5325078/1‑76 (MQ=255)

        cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                 <  1:151211/76‑1 (MQ=255)

        cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                 >  2:1753450/1‑76 (MQ=255)

        cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                 <  1:2409221/76‑1 (MQ=255)

        cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                 <  1:5545632/76‑1 (MQ=255)

         ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAg                                                                >  2:5176572/1‑76 (MQ=255)

         ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAg                                                                <  2:1532166/76‑1 (MQ=255)

           tGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCTTTCAgcg                                                              <  2:4501209/76‑1 (MQ=255)

           tGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcg                                                              <  2:2581228/76‑1 (MQ=255)

           tGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcg                                                              >  1:5493308/1‑76 (MQ=255)

            gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcgc                                                             >  2:1895127/1‑76 (MQ=255)

             aCAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGcc                                                            >  1:5061740/1‑76 (MQ=255)

               aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa                                                          >  2:4313677/1‑76 (MQ=255)

               aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa                                                          >  1:5303024/1‑76 (MQ=255)

               aaGGTGAAACCTAAATCTAACATTTTCGCTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa                                                          >  2:4123089/1‑76 (MQ=255)

                 ggTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATa                                                        <  1:1102104/76‑1 (MQ=255)

                    gAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTg                                                     >  2:2065537/1‑76 (MQ=255)

                    gAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTg                                                     >  2:2118106/1‑76 (MQ=255)

                    gAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTg                                                     <  1:1778200/76‑1 (MQ=255)

                    gAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTg                                                     >  2:3271898/1‑76 (MQ=255)

                      aaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGcc                                                   >  2:2879802/1‑76 (MQ=255)

                       aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGccc                                                  >  2:3522707/1‑76 (MQ=255)

                          tAAATCTAACATTTTCGGTGTCGCAGAGTCGCCACGAATACGCGCCAGCAGGCGTTCCGCGCCCATCCTGCCCCTc                                               <  2:4197835/76‑1 (MQ=255)

                          tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATCCTGCCCacc                                               >  2:2586546/1‑74 (MQ=255)

                          tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATc                                               >  1:2826341/1‑76 (MQ=255)

                          tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGACCATc                                               <  2:3797143/76‑1 (MQ=255)

                          tAAATCTAACATTTTCGGTGTCACAGATTACACACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATc                                               >  1:3184136/1‑76 (MQ=255)

                           aaaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATcc                                              <  1:4996382/76‑1 (MQ=255)

                             aTCTAACATTTTCGGTGTCACAGATTCGGCACGAATACGCGCCAGCAGGCGTTCAGCGCCCATACTGCCCATCCGc                                            <  2:837860/76‑1 (MQ=255)

                             aTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGc                                            >  1:719538/1‑76 (MQ=255)

                              tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                           >  2:946552/1‑76 (MQ=255)

                              tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                           >  2:3028248/1‑76 (MQ=255)

                              tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                           >  1:808160/1‑76 (MQ=255)

                                tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGcccc                                         >  2:4577493/1‑73 (MQ=255)

                                tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCa                                         <  1:1223377/76‑1 (MQ=255)

                                 aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                        <  2:497097/76‑1 (MQ=255)

                                 aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                        <  1:3199149/76‑1 (MQ=255)

                                 aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCACCCGCTccc                                        >  2:1549032/1‑74 (MQ=255)

                                  aCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcg                                       <  1:991131/76‑1 (MQ=255)

                                   cATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgc                                      <  1:723845/76‑1 (MQ=255)

                                    aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg                                     <  1:2418458/76‑1 (MQ=255)

                                    aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg                                     <  2:4561169/76‑1 (MQ=255)

                                    aTTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcgcg                                     >  2:4426905/1‑76 (MQ=255)

                                     ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg                                    >  2:2759173/1‑76 (MQ=255)

                                      tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggc                                   <  1:834932/76‑1 (MQ=255)

                                      tttCGGGGTCACAGTTGCGCCGCGAATACGCGCCAGCAGGCGTTCAGCGCCACTACTGCCCATCCGCTCACgcggc                                   <  2:5302151/76‑1 (MQ=255)

                                       ttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcg                                  >  2:2449144/1‑76 (MQ=255)

                                        tCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcgc                                 >  2:2412515/1‑75 (MQ=255)

                                          ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATCCTGCCCATCCGCTCACGCGGCGTCa                               <  2:2804145/76‑1 (MQ=255)

                                          ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                               <  2:426363/76‑1 (MQ=255)

                                          ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                               >  1:1970967/1‑76 (MQ=255)

                                           gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg                              >  1:1215634/1‑76 (MQ=255)

                                           gtgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAg                              <  2:1405412/76‑1 (MQ=255)

                                            tgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGc                             >  2:3081546/1‑76 (MQ=255)

                                            tgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGc                             <  1:2976655/76‑1 (MQ=255)

                                             gtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                            >  2:2486002/1‑76 (MQ=255)

                                             gtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCa                            <  1:1033769/76‑1 (MQ=255)

                                              tCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAc                           >  2:4792776/1‑76 (MQ=255)

                                               cacaGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACg                          >  1:2072507/1‑76 (MQ=255)

                                                 caGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt                        >  2:1066907/1‑76 (MQ=255)

                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                       >  1:1087305/1‑76 (MQ=255)

                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                       <  2:2738492/76‑1 (MQ=255)

                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                       >  1:2748296/1‑76 (MQ=255)

                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                       <  1:3034683/76‑1 (MQ=255)

                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                       <  1:5000216/76‑1 (MQ=255)

                                                    aTTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGc                     >  1:3731045/1‑76 (MQ=255)

                                                     ttCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                    >  2:3353758/1‑76 (MQ=255)

                                                     ttCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                    <  2:3680027/76‑1 (MQ=255)

                                                     ttCGCCACGAATACGCGACAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCa                    >  1:5015724/1‑76 (MQ=255)

                                                      tCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCaa                   >  1:3685319/1‑76 (MQ=255)

                                                       cGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg                  <  2:3190825/76‑1 (MQ=255)

                                                       cGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCATCAGCACGCTCGCAAg                  >  2:2695637/1‑76 (MQ=255)

                                                        gCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAgc                 >  2:5662049/1‑75 (MQ=255)

                                                        gCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGt                 <  2:1935205/76‑1 (MQ=255)

                                                        gCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGt                 <  1:2228120/76‑1 (MQ=255)

                                                        gCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGCCCGCACGCTCGCAAgc                 >  1:429537/1‑75 (MQ=255)

                                                         ccACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc                >  2:4161879/1‑76 (MQ=255)

                                                             taaTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTgg            >  1:393863/2‑76 (MQ=255)

                                                             gAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTgg            >  2:3519977/1‑76 (MQ=255)

                                                             gAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTgg            <  2:5032084/76‑1 (MQ=255)

                                                             gAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGCCGTgg            >  2:1777278/1‑76 (MQ=255)

                                                               angcgcgCCCGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt          <  2:2386629/73‑1 (MQ=255)

                                                               aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGcc          >  2:1995489/1‑75 (MQ=255)

                                                               aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt          >  1:3796995/1‑76 (MQ=255)

                                                                tACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTc         >  1:2356838/1‑76 (MQ=255)

                                                                 aCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTcc        >  1:303836/1‑76 (MQ=255)

                                                                  cgcgCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa       <  2:3370163/76‑1 (MQ=255)

                                                                   gcgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCCAGTCGTGGCTCCac      >  2:5203317/1‑75 (MQ=255)

                                                                    cgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGAGGCGTCAGCACGCTCGCAAGTCGTGGCTCCCTc     >  1:5846721/1‑76 (MQ=255)

                                                                     gcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa    >  2:2874082/1‑76 (MQ=255)

                                                                     gcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa    >  1:1964785/1‑76 (MQ=255)

                                                                       cagcagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc  <  2:1629284/76‑1 (MQ=255)

                                                                       cagcagGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAcc  >  2:4001863/1‑76 (MQ=255)

GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCACC  >  NC_000913/3575370‑3575515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`