| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,627,142 | +G | intergenic (‑24/+23) | yhiH ← / ← yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,627,140 | 1 | . | G | 98.5% | 341.4 / ‑1.5 | 133 | intergenic (‑22/+25) | yhiH/yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (77/54); total (77/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 151 total aligned reads displayed.
AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑G‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT > NC_000913/3627065‑3627210 | aaTATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGc < 2:4377349/76‑1 (MQ=255) agatCTAGAGTGATCGGGGTCAGAGCAACTGTTTTTCCATAATGCTGGCTCTCGCCCGCCAGTTGCGCGACAGGC‑g < 1:57992/74‑1 (MQ=255) tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑g > 2:3634657/1‑76 (MQ=255) tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑g > 1:4676419/1‑76 (MQ=255) tatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑g > 1:5483556/1‑76 (MQ=255) tagcGAGAGTGTTATTGTCCAGCGCAACGGTTTTTCCATAATGCTGGCTCCCGCCCGCCAGTTGCGCGACAGGC‑g‑g < 2:3748966/73‑1 (MQ=255) atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gg > 1:5188500/1‑75 (MQ=255) atCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gg > 2:2187089/1‑75 (MQ=255) atCGAGAGTGATATTGTTCAGCGCAACGGGTTTTCCATAATGCTGGCTCAACCCCGCCAGCTGCGCGCCcggc‑g‑gg > 2:5203960/1‑75 (MQ=255) tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGGCAGTTGCGCGACAGGC‑g‑gga > 1:4102781/1‑74 (MQ=255) tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑ggg > 1:4386177/1‑74 (MQ=255) tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gga > 2:179478/1‑74 (MQ=255) tCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑gga < 1:1415264/76‑3 (MQ=255) cGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑ggac > 2:2069717/1‑73 (MQ=255) cGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑g‑ggac > 2:515346/1‑73 (MQ=255) gTGATATTGTTCAGCGCAACGGTTTTGCCATAATGCTGGCTCACGCCCGCCAGATGCGCGACCGGCGG‑G‑ACgggga > 1:2619382/1‑74 (MQ=255) tGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAAc < 2:2193683/76‑1 (MQ=255) atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGGAccc > 1:2228512/1‑75 (MQ=255) atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAAccc > 2:1268392/1‑75 (MQ=255) atatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCa > 1:2148982/1‑76 (MQ=255) tatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑GCGGGAAcccg > 2:4439659/1‑74 (MQ=255) atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGGACCAGt > 1:430069/1‑76 (MQ=255) atTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGt > 2:3598682/1‑76 (MQ=255) ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGtt > 1:4385082/1‑76 (MQ=255) ttGGTCGGCGCAGGGGTTTTTCCATAATGCGGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGtt < 2:963251/76‑1 (MQ=255) tgtgCAGCGCAGCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTc < 1:2045581/76‑1 (MQ=255) tCAGCGCATCGGTTTTTCCATAATGCTGTCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAg < 1:816986/76‑1 (MQ=255) tCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAg < 2:3730763/76‑1 (MQ=255) cAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGa > 2:4358189/1‑76 (MQ=255) gcgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGCTCCCGATg > 2:4274234/1‑76 (MQ=255) cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGc > 1:1772657/1‑76 (MQ=255) gcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCg < 1:5386049/76‑1 (MQ=255) gcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCCCGACAGGCGG‑G‑GCCGGAACCCGCTCCAGAGGcc > 2:5808921/1‑75 (MQ=255) cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGTACCAGTTCCAGATGCgc > 1:1061072/1‑75 (MQ=255) cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGt > 2:1372781/1‑76 (MQ=255) cAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCACGTCCAGAcgcgc > 2:2093745/1‑75 (MQ=255) aaCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTc > 1:3106933/1‑76 (MQ=255) aaCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTc > 1:978901/1‑76 (MQ=255) aaCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGGTCCAGATGCGTc > 1:2578799/1‑76 (MQ=255) aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCa < 2:5483555/76‑1 (MQ=255) aCGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCa > 1:3336570/1‑76 (MQ=255) ttttttCACTAGTGCTGGCTGCGCCCCTCGAGTTGGGCGACAGGCGG‑G‑TTGGGAACCAGTTCCAGATGCGTCATTg < 2:4246063/75‑1 (MQ=255) gTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTg < 2:2734856/76‑1 (MQ=255) tttttCCATAATGCTGGCTCCCGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGc < 2:1136517/76‑1 (MQ=255) tttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGc < 2:703902/76‑1 (MQ=255) ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCg < 2:2338465/76‑1 (MQ=255) ttttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGCTCCAGATGCGTCATTGCg > 2:2817651/1‑76 (MQ=255) ttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCACTTCCAGATGCGCCATTCCGGc > 2:5662045/1‑76 (MQ=255) tCCATAATGCTGGTTCACGCCCGCCGTTTTCGCGACAGGC‑G‑GTGCGGTAACCAGTTCCAGATGCGTCATTGTGGCa < 1:3524966/76‑1 (MQ=255) tCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCCGTTCCAGATGCGTCATTGCCGCa > 2:1379905/1‑76 (MQ=255) ccATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCaa < 1:3598682/76‑1 (MQ=255) ccATAATGCTGGCTCACGCCCGCCAGTTGCGCCACAGGCGG‑G‑ACGGGAACCAGTCTCCGATGCGCCTGTGCGGcca > 2:56110/1‑74 (MQ=255) aTAATGCGGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAcc < 2:2383022/76‑1 (MQ=255) tAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCt < 2:4886792/76‑1 (MQ=255) aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCCACCTca > 1:4720202/1‑76 (MQ=255) aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGCTCCAGATGCGTCATTGCGGCAAACTcc > 1:844791/1‑75 (MQ=255) tGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcac > 1:272711/1‑76 (MQ=255) cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca > 2:3506126/1‑76 (MQ=255) cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca < 1:3175911/76‑1 (MQ=255) cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca > 2:733053/1‑76 (MQ=255) cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcacca > 1:4917119/1‑76 (MQ=255) cTGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGACACCAGCTCCAGATGCGGCATTGCGCCAACCTcacca > 2:3513228/1‑76 (MQ=255) tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCGACCTcaccac > 1:2898519/1‑76 (MQ=255) tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac < 1:2378112/76‑1 (MQ=255) tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac < 1:3759991/76‑1 (MQ=255) tGGCTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTcaccac > 1:4158854/1‑76 (MQ=255) gccTCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACg < 1:4521232/74‑1 (MQ=255) tCACGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAgg > 1:2050671/1‑76 (MQ=255) ccgcccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc < 1:888464/75‑1 (MQ=255) ccgcccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc < 1:1329307/75‑1 (MQ=255) ccgcccgccAGGTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc < 2:4674296/75‑1 (MQ=255) aCGCCCGCCAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtc < 1:1907276/76‑1 (MQ=255) cgcccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcg < 1:2783530/76‑1 (MQ=255) gcccgccACTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCCACCCCGAGgtcgc > 2:4948559/1‑75 (MQ=255) cccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc > 1:4572280/1‑76 (MQ=255) cccgccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGgtcgtc > 1:4166998/1‑76 (MQ=255) gccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg > 1:3435425/1‑76 (MQ=255) gccAGTGGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAgg < 1:1650999/76‑1 (MQ=255) ccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc < 1:3742782/76‑1 (MQ=255) ccAGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGc < 1:3912835/76‑1 (MQ=255) cgTTGCGCGACAGGCGG‑G‑TCGGGAACCAGTTCCAGATGCTTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa < 2:1788597/75‑1 (MQ=255) aGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa < 1:1164554/76‑1 (MQ=255) aGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa < 1:630913/76‑1 (MQ=255) aGTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCa < 1:4278810/76‑1 (MQ=255) gtggcgcTACAGGC‑GTG‑ACGGGTGCCGTTGCCAGAGGCGTCCTTGCGGCAACCTCACCGCGAGGTCGTCAGGCCAc < 1:97803/73‑1 (MQ=255) gTTGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCAc < 2:3106933/76‑1 (MQ=255) ttGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACg < 1:3189638/76‑1 (MQ=255) tGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACgg < 1:2658674/76‑1 (MQ=255) tGCGCGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCACTGCGGCAACCTCACCACGAGGTCGTCAGGCCCCgg > 1:2238237/1‑76 (MQ=255) gcgcGACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGa > 1:3036348/1‑76 (MQ=255) cgcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCCCGAGGTCGTCAGGCCACGGaa > 2:1188047/1‑76 (MQ=255) cgcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCCCGAGGTCGCCAGGACACggca > 2:568913/1‑74 (MQ=255) gcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGCAg > 2:754881/1‑76 (MQ=255) gcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAg < 2:1201301/76‑1 (MQ=255) gcgACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCGTCAGGCCACGGAAg > 1:1856417/1‑76 (MQ=255) ggACAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGt < 2:2416104/75‑1 (MQ=255) cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct > 2:2900950/1‑76 (MQ=255) cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct > 2:2424568/1‑76 (MQ=255) cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGttct < 2:2578799/76‑1 (MQ=255) cAGGCGG‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCCACCACGAGGTCGTCAGGCCACGCACGttct > 2:276629/1‑76 (MQ=255) | AATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGC‑G‑G‑ACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCT > NC_000913/3627065‑3627210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |