| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,930,568 | +G | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,930,567 | 1 | . | G | 98.6% | 389.5 / ‑0.8 | 142 | intergenic (+65/‑374) | kup/rbsD | low affinity potassium transport system/RbsD |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (66/74); total (67/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
Only 100 of 152 total aligned reads displayed.
ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG > NC_000913/3930493‑3930637 | atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑g < 2:239942/76‑1 (MQ=255)atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑g < 1:4164901/76‑1 (MQ=255) tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑gg < 2:1787936/76‑2 (MQ=255) tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑gg < 2:3215730/76‑2 (MQ=255) gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggg > 1:832091/1‑74 (MQ=255) gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggc < 2:2677662/76‑3 (MQ=255) tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggcg < 1:992584/76‑4 (MQ=255) tCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑ggcg < 2:892719/76‑4 (MQ=255) aTAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCgaga < 2:4729171/76‑1 (MQ=255) agcgtccgtcGGGTACAGATTGATCAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa < 1:43371/74‑1 (MQ=255) aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa > 1:378452/1‑76 (MQ=255) aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa < 1:153522/76‑1 (MQ=255) aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa > 1:5637372/1‑76 (MQ=255) aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGaaa > 2:3633828/1‑76 (MQ=255) aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAAc < 1:3599909/76‑1 (MQ=255) aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAAc < 2:2705550/76‑1 (MQ=255) aCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAAc < 1:837727/76‑1 (MQ=255) cgtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACg < 2:1985008/76‑1 (MQ=255) gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGc > 1:3659408/1‑76 (MQ=255) gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGc > 1:1010674/1‑76 (MQ=255) gtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGc > 2:4693132/1‑76 (MQ=255) tccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGCGAAACGcc > 2:3017550/1‑76 (MQ=255) gtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCaaa < 2:1522944/76‑1 (MQ=255) tcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAAc < 1:894855/76‑1 (MQ=255) cGGGTACAGATTGACCAGCTGTCGCGCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCCAACg < 2:2187533/76‑1 (MQ=255) cGGGTACAGATTGAACAACTGTCGCCTACTTTCTGGCGCGTGGTGGCAAGTTATTGT‑TGGCGAGAAACGCCAAACg < 2:2132986/76‑1 (MQ=255) gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGt > 2:2544276/1‑76 (MQ=255) ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTa < 1:5539509/76‑1 (MQ=255) aCAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaa > 1:4012752/1‑76 (MQ=255) cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaag > 2:3865906/1‑76 (MQ=255) cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaag > 1:4803740/1‑76 (MQ=255) aGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTagaaga < 1:742302/76‑1 (MQ=255) gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACg < 1:5784802/68‑1 (MQ=255) gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa < 1:3986541/76‑1 (MQ=255) gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa < 2:142408/76‑1 (MQ=255) aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGaagaag < 1:1360068/76‑1 (MQ=255) aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGaagaag > 1:5242855/1‑76 (MQ=255) ttGCACATCTGTCGCCCACTTTCTGGCGCGTGGTGGCACGTTATGGT‑TGGCGAGAACCGCCAAACGTAGAAGACGt < 2:4246382/76‑1 (MQ=255) ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGt > 2:2788304/1‑76 (MQ=255) tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCGAAACGTAGAAGAAGtt < 1:3448816/76‑1 (MQ=255) tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGtt < 1:1740568/76‑1 (MQ=255) tGAACAACTGTCGCCCACGTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCGAAACGTAGAAGAAGtg < 1:3481375/76‑2 (MQ=255) gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGttt > 1:4833862/1‑76 (MQ=255) gAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGttt > 2:4078573/1‑76 (MQ=255) acaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc > 2:5617385/1‑76 (MQ=255) caacTGTCGCGCACTTACTGGCGCGTGGTGGCAAGTTATGTT‑CGGCTCGAAACGCCAAACTTAGACTAAGTTTTcc < 1:2558662/76‑1 (MQ=255) caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc < 2:2498387/76‑1 (MQ=255) caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc > 2:5006602/1‑76 (MQ=255) caacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTcc > 1:1540886/1‑76 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCa < 2:2274500/76‑1 (MQ=255) acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc > 1:2106333/1‑76 (MQ=255) acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc > 2:3098319/1‑76 (MQ=255) acTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc < 2:1860812/76‑1 (MQ=255) tGTCGCCCACGTTCTGGCTCGGGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTGCCACCg < 2:1723221/76‑1 (MQ=255) gTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGc < 1:77293/76‑1 (MQ=255) tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGCACACCCCCACAAGAAGAAGAAGATTTCCACCGcc > 2:1587366/1‑75 (MQ=255) tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt < 2:3052516/76‑1 (MQ=255) tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt < 2:5783467/76‑1 (MQ=255) tCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt > 2:4054173/1‑76 (MQ=255) cccACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg > 1:5270563/1‑76 (MQ=255) cccACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg < 1:2249176/76‑1 (MQ=255) ccACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGCTGCgg < 1:4398460/76‑1 (MQ=255) cACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGt > 1:2358793/1‑76 (MQ=255) cACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGt > 1:4570275/1‑76 (MQ=255) cACTGTCTGGCGCGTGGTGGCAAGTTATGGC‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCGGCGGt > 1:4927599/1‑76 (MQ=255) aCTTTCTGGCGCGTGGTGGCACGTTATGGT‑TGGCGAGAAACGCCAAACATAGAAGAAGTTTTCCACCGCTGCGGTc > 2:5227836/1‑76 (MQ=255) aCTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc > 2:659451/1‑76 (MQ=255) aCTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc > 1:4201087/1‑76 (MQ=255) aCTTTCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc < 1:5533171/76‑1 (MQ=255) tttCTGGCGCGTGGTGGCCAGTTATGGT‑TGGCGAGGCCCGCTGATCGTAGAAGAAGTTTTCCTCGGCTGCGGTCtt < 2:5257011/76‑2 (MQ=255) tttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg < 2:4892785/76‑1 (MQ=255) tttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg > 1:5366283/1‑76 (MQ=255) tttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg < 2:1675859/76‑1 (MQ=255) ttCTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg > 1:2927705/1‑76 (MQ=255) cgggCGGGGGGTGGCAGGTTATGGTGG‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa < 2:5709534/74‑1 (MQ=255) cTGGCGCGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa < 2:5576600/76‑1 (MQ=255) tGGCGCGTGGTGGCAAGTTATGGT‑TGGCTAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAg > 1:2943052/1‑76 (MQ=255) gcgcGTGGTGGCAGGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa < 1:2177454/76‑1 (MQ=255) gcgcGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa < 2:2439815/76‑1 (MQ=255) gcgcGTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGa > 2:3865678/1‑76 (MQ=255) cgcgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAt > 1:585337/1‑76 (MQ=255) gcgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAtt > 1:2734062/1‑76 (MQ=255) gcgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAtt > 1:5351490/1‑76 (MQ=255) cgTGGTGGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTa < 2:1710859/76‑1 (MQ=255) gtggtgGCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTaa > 1:4991335/1‑76 (MQ=255) tggtggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAg > 2:5651003/1‑76 (MQ=255) ggtggCAAGTTATGGT‑TGGCGAGACACGCCCAACGTAGACGAAGTTTTCCACCGCTTCGTTCTGGCATGATTacgc < 2:43249/76‑4 (MQ=255) gtggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGtt > 1:1244872/1‑76 (MQ=255) ggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc < 2:1267558/76‑1 (MQ=255) ggCAAGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc > 1:5691952/1‑76 (MQ=255) aaGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg > 2:2353719/1‑76 (MQ=255) aaGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg > 2:5605763/1‑76 (MQ=255) aaGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCgg > 1:1804975/1‑76 (MQ=255) aaGTTATGGT‑TGGCGAGAAACACCAAACGTAGAAGAAGTTTTCCACCGCTGCGCTCTGGAAGGATCAAGTTGCCgg > 2:4646047/1‑76 (MQ=255) aGTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGga < 2:2815547/76‑1 (MQ=255) ttATGGT‑TGGCGAGAAACCCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatg > 1:3349652/1‑76 (MQ=255) tATGGT‑TGGCGAGAAACGCCCAACGTAGAGGAAGCTCTCCACCGCTGCGGTGCGGCAGGCATAAGCTGGCGgatga > 2:607472/1‑76 (MQ=255) tATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatga > 1:1100513/1‑76 (MQ=255) tGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCCCCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg < 2:1370013/76‑1 (MQ=255) tGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg < 2:4991334/76‑1 (MQ=255) | ATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAAGTTATGGT‑T‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG > NC_000913/3930493‑3930637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |