| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,945,351 | +C | coding (1/600 nt) coding (240/240 nt) |
yifDA ← yifDA ← |
transcription regulator transcription regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,945,350 | 1 | . | C | 97.5% | 318.8 / 1.8 | 119 | coding (2/600 nt) | yifDA | transcription regulator |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (55/61); total (56/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 126 total aligned reads displayed.
TGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CT‑C‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGT > NC_000913/3945275‑3945419 | tGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑ct > 2:3697176/1‑76 (MQ=255) tAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑ct‑cctt > 2:2911773/1‑73 (MQ=255) tAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑ct‑cctt > 2:3125608/1‑73 (MQ=255) tAAGCATACATGCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑ct‑cctt < 1:5598887/76‑4 (MQ=255) aTACCTCCCCACAACG‑GGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggc < 1:6492/76‑1 (MQ=255) tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggc < 1:421392/76‑1 (MQ=255) tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggc > 1:5433927/1‑76 (MQ=255) tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggc < 2:3977825/76‑1 (MQ=255) tACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggc > 1:5605288/1‑76 (MQ=255) aCATTCCCACATCGAGTCGCTGACACCGATAGACAACTCGTTCTGTCGTGAGGTATGCGCCAC‑CTCC‑TTCCGggcg < 1:2303588/76‑1 (MQ=255) aCATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggcg > 1:1029955/1‑76 (MQ=255) aCATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggcg < 1:5096322/76‑1 (MQ=255) cATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggcgg > 1:4403107/1‑76 (MQ=255) cATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggcgc > 2:450164/1‑75 (MQ=255) cATGCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggcgg < 2:5052008/76‑1 (MQ=255) aTTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGggcggc > 1:3276316/1‑76 (MQ=255) ttCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGcc < 2:3390191/76‑1 (MQ=255) ttCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGcc < 1:5585172/76‑1 (MQ=255) tCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCt < 1:4848342/76‑1 (MQ=255) tCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCt < 1:3622800/76‑1 (MQ=255) tCCCACAACGAGGCGCTGGCACCGATAGAAAACTCCTTATGCCGTGAGGGATGCGCCAC‑CTCC‑TCACGCGCGGCCt > 2:2470429/1‑76 (MQ=255) cccACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTg < 2:4483747/76‑1 (MQ=255) ccACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGc < 2:2378282/76‑1 (MQ=255) cacaACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGcc > 1:521670/1‑76 (MQ=255) cacaACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGcc < 2:368211/76‑1 (MQ=255) caACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAg < 2:3686317/76‑1 (MQ=255) aaCGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAgg < 2:567422/76‑1 (MQ=255) cGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTg < 1:5160524/76‑1 (MQ=255) cGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTg < 2:1669120/76‑1 (MQ=255) cGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTg > 1:1117017/1‑76 (MQ=255) gAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCCC‑CTCC‑TTACGGGCGGCCTGCCa < 1:2642945/71‑1 (MQ=255) gAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCCC‑CTCC‑TTACGGGCGGCCTGCCa > 2:2642945/1‑71 (MQ=255) gAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGc < 1:2911773/76‑1 (MQ=255) aGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGGCAGGTGCt > 1:2334680/1‑76 (MQ=255) aGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCt < 2:3189901/76‑1 (MQ=255) cgcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCAt < 2:3605038/76‑1 (MQ=255) cgcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCAt < 1:3384673/76‑1 (MQ=255) gcTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATg > 1:3217790/1‑76 (MQ=255) cTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCACACC‑C‑TTACGGGCGGCCTGCCAGGTGCTCATgg > 1:1651361/1‑75 (MQ=255) tGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACg < 2:2886636/52‑1 (MQ=255) ggCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGc < 1:2521934/76‑1 (MQ=255) ggCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGc > 2:2076452/1‑76 (MQ=255) gCACCGATAGAAAACTCGGTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCg < 2:3494631/76‑1 (MQ=255) cACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCTAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGt < 2:1389382/76‑1 (MQ=255) cACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCCGGTGCTCATGAGCGt > 1:292404/1‑76 (MQ=255) cACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGt > 2:5404641/1‑76 (MQ=255) aCCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGtt > 2:5326500/1‑76 (MQ=255) aCCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGtt > 2:2146100/1‑76 (MQ=255) ccGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCCGGCGCTCATGAGCGttt > 2:1276437/1‑76 (MQ=255) gATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCt < 2:2445481/76‑1 (MQ=255) gATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCt > 1:4526004/1‑76 (MQ=255) aTAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTg > 1:5345218/1‑76 (MQ=255) tAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTCCGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGc < 1:3205647/76‑1 (MQ=255) tAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGc < 1:3726880/76‑1 (MQ=255) tAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCACGCCAGGCGCTCATGAGCGCTCCTGc > 2:1594305/1‑76 (MQ=255) gAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAt < 1:4608803/76‑1 (MQ=255) gAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCAt > 1:1850825/1‑76 (MQ=255) aaCTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAg < 1:4691275/76‑1 (MQ=255) aCTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAgg < 2:1275619/76‑1 (MQ=255) aCTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAgg < 2:1300742/76‑1 (MQ=255) aCTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAgg < 2:5083422/76‑1 (MQ=255) cTCGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGc < 1:5404642/76‑1 (MQ=255) cGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCag < 2:3376425/76‑1 (MQ=255) cGTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCag > 1:2126745/1‑76 (MQ=255) gctATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGc < 1:2869655/56‑1 (MQ=255) gctATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGc > 2:2869655/3‑58 (MQ=255) gTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagt > 1:4244656/1‑76 (MQ=255) gTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagt < 1:5299313/76‑1 (MQ=255) gTTATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagt > 2:2996487/1‑76 (MQ=255) ttATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagta < 2:4597303/76‑1 (MQ=255) gtATGTCGTGAGGTGTGCGCCCC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagta < 2:227313/75‑1 (MQ=255) tATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtag > 1:4852432/1‑76 (MQ=255) tATGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtag > 2:1167815/1‑76 (MQ=255) aTGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtagt < 1:5757461/76‑1 (MQ=255) aTGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCagtagt < 1:4090478/76‑1 (MQ=255) tGTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtt > 1:2358176/1‑76 (MQ=255) gTCGTGAGGTATGCGCCGC‑CTCC‑TTCCGGGCGGCCGGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttt < 2:4871462/76‑1 (MQ=255) gTCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttt < 1:2812298/76‑1 (MQ=255) tCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTCGtttt < 2:509607/76‑1 (MQ=255) tCGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGtttt > 1:5263263/1‑76 (MQ=255) cGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttttt > 1:292167/1‑76 (MQ=255) cGTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttttt > 2:3446161/1‑76 (MQ=255) cGTGAGGTATGCGCCAC‑CT‑CTTTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGttttt < 1:3108551/76‑1 (MQ=255) gTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTc > 1:4889948/1‑76 (MQ=255) gTGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTc < 2:3312554/76‑1 (MQ=255) tGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCa < 1:1755052/76‑1 (MQ=255) tGAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCa < 1:4499453/76‑1 (MQ=255) tGAGGCATGCGCCAC‑CGCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGCAGCTTTTCa > 2:215791/1‑76 (MQ=255) gAGGTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCAc > 1:2911447/1‑76 (MQ=255) ggTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCg > 2:3991702/1‑76 (MQ=255) ggTATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCg > 1:2209692/1‑76 (MQ=255) tATGCGCCAC‑CTCC‑TTACGGGCGGCCTGGCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGc < 2:2334680/76‑1 (MQ=255) tATGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGc > 1:1937321/1‑76 (MQ=255) aTGCGCCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCa > 1:138896/1‑76 (MQ=255) gcCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAGGGCAGTAGTTTTTCACCGGCAGCgg < 2:1374292/76‑1 (MQ=255) gcCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCgg > 1:5813332/1‑76 (MQ=255) gcCAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCgg > 1:501149/1‑76 (MQ=255) ccAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGt < 2:4267941/76‑1 (MQ=255) ccAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGt > 2:3403138/1‑76 (MQ=255) ccAC‑CTCC‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGt < 2:1937321/76‑1 (MQ=255) | TGATTAAGCATACATTCCCACAACGAGGCGCTGGCACCGATAGAAAACTCGTTATGTCGTGAGGTATGCGCCAC‑CT‑C‑TTACGGGCGGCCTGCCAGGTGCTCATGAGCGTTTCTGCATAAGGCAGTAGTTTTTCACCGGCAGCGGT > NC_000913/3945275‑3945419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |