Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,006,483 +C coding (183/207 nt) b4554 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,006,4801.C96.7% 322.4 / 5.1 123coding (186/207 nt)b4554hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (1/3);  new base C (63/55);  total (65/58)
Fisher's exact test for biased strand distribution p-value = 3.45e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01

Only 100 of 136 total aligned reads displayed.

TCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCG  >  NC_000913/4006406‑4006550
                                                                            |                                                                       
tCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTc                                                                        <  2:3697759/76‑1 (MQ=255)
tCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTc                                                                        <  1:1154921/76‑1 (MQ=255)
 cccAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTcc                                                                       >  2:3234143/1‑76 (MQ=255)
   cAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTcccc                                                                    <  1:4304845/76‑2 (MQ=255)
    aGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTcccca                                                                   <  1:1584784/76‑3 (MQ=255)
    aGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTcccca                                                                   >  1:2693767/1‑74 (MQ=255)
     gCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGCAAAATAGCGTccccaa                                                                  >  2:538123/1‑73 (MQ=255)
         aaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAcccc                                                               >  2:2659472/1‑76 (MQ=255)
         aaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAcccc                                                               >  1:3731848/1‑76 (MQ=255)
         aaTCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAAcccc                                                               >  1:3545053/1‑76 (MQ=255)
           tCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAc                                                             <  2:5487269/76‑1 (MQ=255)
           gcAAGGAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAc                                                             <  2:258826/75‑1 (MQ=255)
           acAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCAc                                                             <  1:4297200/75‑1 (MQ=255)
            cAAGTAAGCGGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACg                                                            <  2:2948869/76‑1 (MQ=255)
            cAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACg                                                            >  2:1939841/1‑76 (MQ=255)
            cAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACg                                                            <  2:1997150/76‑1 (MQ=255)
             aaGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGc                                                           >  1:3728705/1‑76 (MQ=255)
             aaGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGc                                                           <  2:3576215/76‑1 (MQ=255)
              aGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGcc                                                          <  2:2720290/76‑1 (MQ=255)
               gTAAGCCGCGCCTGACCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCCACCCCACGCCa                                                         <  2:1957984/76‑1 (MQ=255)
                tAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCaa                                                        <  2:3667545/76‑1 (MQ=255)
                tAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCaa                                                        <  1:4810632/76‑1 (MQ=255)
                 aaGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAAc                                                       >  1:456328/1‑76 (MQ=255)
                 aaGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAAc                                                       <  1:1018619/76‑1 (MQ=255)
                  aGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAAcc                                                      >  1:5187539/1‑76 (MQ=255)
                  aGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAAcc                                                      >  2:4885373/1‑76 (MQ=255)
                   gCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCa                                                     <  1:3277843/76‑1 (MQ=255)
                   gCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTcc                                                                       >  2:5798458/1‑58 (MQ=255)
                    ccGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAg                                                    >  2:4518377/1‑76 (MQ=255)
                     cgcgCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGc                                                   <  1:1855431/76‑1 (MQ=255)
                     cgcgCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGc                                                   >  2:1506203/1‑76 (MQ=255)
                      gcgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGca                                                  >  1:1791476/1‑76 (MQ=255)
                      gcgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGca                                                  <  2:3727301/76‑1 (MQ=255)
                      gcgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGca                                                  >  1:2611942/1‑76 (MQ=255)
                      gcgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGca                                                  >  1:1438335/1‑76 (MQ=255)
                       cgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGcac                                                 >  1:3940642/1‑76 (MQ=255)
                       cgcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGcac                                                 <  2:2096368/76‑1 (MQ=255)
                        gcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGcaca                                                <  1:4156736/76‑1 (MQ=255)
                        gcCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGcaca                                                <  1:1470113/76‑1 (MQ=255)
                         ccTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACaa                                               >  1:3304008/1‑76 (MQ=255)
                         ccTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACaa                                               >  1:644440/1‑76 (MQ=255)
                          cTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAat                                              >  2:3618884/1‑76 (MQ=255)
                            gCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAatat                                            <  2:2842427/76‑1 (MQ=255)
                            gCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAatat                                            >  2:3247551/1‑76 (MQ=255)
                              ccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGa                                          <  1:799954/76‑1 (MQ=255)
                              ccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGa                                          <  2:2452794/76‑1 (MQ=255)
                              ccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGa                                          >  1:2897881/1‑76 (MQ=255)
                              ccACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGa                                          >  1:4694194/1‑76 (MQ=255)
                                acttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAAt                                        >  2:2753527/1‑76 (MQ=255)
                                 cttcaacacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATc                                       <  1:5458757/76‑1 (MQ=255)
                                       cgcttcgaACGCAAGCACTGGGGGGGAAAGTAGCGTCCCCACCCCCAGGCCACGCAGCACAATATGAATCGCCAGt                                 <  2:150612/74‑1 (MQ=255)
                                       cacttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGt                                 >  1:2609099/1‑76 (MQ=255)
                                          ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCg                              <  1:5675142/76‑1 (MQ=255)
                                          ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCg                              <  1:2659472/76‑1 (MQ=255)
                                          ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCg                              <  1:4233461/76‑1 (MQ=255)
                                          ttcaaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCg                              <  2:4478068/76‑1 (MQ=255)
                                           tcaaACGCAATCACTGAGCGGGAAAATAGCGTCCGCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCgg                             <  1:5327778/76‑1 (MQ=255)
                                            caaACGCAATCACTGAGCGGGGAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCCGTCCggc                            >  2:1204274/1‑75 (MQ=255)
                                            caaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGt                            <  2:3390787/76‑1 (MQ=255)
                                            caaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGt                            >  2:5001835/1‑76 (MQ=255)
                                            caaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGt                            >  2:433333/1‑76 (MQ=255)
                                            caaACGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGCCCGGt                            >  2:702679/1‑76 (MQ=39)
                                             aaaCGCAATCACTGAGCGGGAAAATAGCGTCCCCAGCCCCACGCCAGCCAGCACAATATGAATCGCCAGTCCGGTc                           <  2:1523131/76‑1 (MQ=255)
                                                cGCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGGCTGa                        >  2:3356767/1‑76 (MQ=255)
                                                 gCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGaa                       <  1:3935403/76‑1 (MQ=255)
                                                 gCAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGaa                       >  1:2691663/1‑76 (MQ=255)
                                                  cAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAg                      >  1:3702751/1‑76 (MQ=255)
                                                  cAATCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAg                      >  1:872959/1‑76 (MQ=255)
                                                   aaTCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCACCCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc                     >  2:4177237/1‑76 (MQ=39)
                                                   aaTCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc                     >  1:1037148/1‑76 (MQ=255)
                                                   aaTCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc                     >  2:4144738/1‑76 (MQ=255)
                                                   aaTCACGGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGc                     <  2:1199335/76‑1 (MQ=255)
                                                     tCACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGccc                   >  2:3474216/1‑76 (MQ=255)
                                                      cACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGcccc                  >  2:2817467/1‑75 (MQ=255)
                                                      cACTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCa                  >  1:171555/1‑76 (MQ=255)
                                                       aCTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAg                 >  2:3274782/1‑76 (MQ=255)
                                                        cggAGCGGGAAAATAGCGTCCCCAGCCCCACGCCAGCCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGc                <  2:5072854/74‑1 (MQ=255)
                                                        cTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGc                >  1:881642/1‑76 (MQ=255)
                                                        cTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGc                >  1:3250307/1‑76 (MQ=255)
                                                        cTGAGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGc                >  1:2781612/1‑76 (MQ=255)
                                                         tGAGCGGGAAAATAGCGTACCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCa               >  1:1582469/1‑76 (MQ=255)
                                                           aGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt             >  1:4086310/1‑76 (MQ=255)
                                                           aGCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt             <  1:331006/76‑1 (MQ=255)
                                                           aGCGGAAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAAt             <  1:5820067/76‑1 (MQ=255)
                                                            gCGGGAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTCAAGCCCAGCACTa            >  2:1580404/1‑76 (MQ=255)
                                                             cGGGAAAATAGCGTCCCCACCCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAg           <  2:772199/76‑1 (MQ=255)
                                                              gggAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGa          >  2:4828733/1‑76 (MQ=255)
                                                              gggAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGa          <  1:989802/76‑1 (MQ=255)
                                                              gggAAAAGAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGa          <  2:1832035/76‑1 (MQ=255)
                                                               ggAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTTAAGCCCAGCAATAGAc         >  2:1822265/1‑76 (MQ=255)
                                                               ggAAAATAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGAc         <  2:5378014/76‑1 (MQ=255)
                                                                 aaaaTAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGc       <  2:3728705/76‑1 (MQ=255)
                                                                 aaaaTAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGc       <  1:1576588/76‑1 (MQ=255)
                                                                  aaaTAGCGCCCCCATCCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGcc      <  2:4438997/76‑1 (MQ=255)
                                                                   aaTAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCa     <  2:3165182/76‑1 (MQ=255)
                                                                    aTAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc    <  1:4709901/76‑1 (MQ=255)
                                                                    aTAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAc    >  1:1391998/1‑76 (MQ=255)
                                                                     tAGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGACAGTCCGGTCTGAAGCCCAGCAATAGACGc       >  1:574163/1‑72 (MQ=255)
                                                                     aaGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAcc   <  1:4238632/75‑1 (MQ=255)
                                                                      aGCGTCCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCAccg  >  1:3391041/1‑76 (MQ=255)
                                                                            |                                                                       
TCCCAGCCAAATCAAGTAAGCCGCGCCTGCCCACTTCAACACTTCAAACGCAATCACTGAGCGGGAAAATAGCGTCCCAACCCCACGCCAACCAGCACAATATGAATCGCCAGTCCGGTCTGAAGCCCAGCAATAGACGCCACCG  >  NC_000913/4006406‑4006550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: