| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,103,519 | +T | intergenic (‑268/‑530) | cpxR ← / → yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,103,519 | 1 | . | T | 99.2% | 414.8 / NA | 135 | intergenic (‑268/‑530) | cpxR/yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base T (58/75); minor base C (1/0); total (60/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 168 total aligned reads displayed.
CAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAG‑A‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATG > NC_000913/4103445‑4103588 | cagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagt > 2:2949068/1‑75 (MQ=255)cagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagt > 1:1235034/1‑75 (MQ=255)cagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagt < 1:5695788/76‑2 (MQ=255)cagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagt < 1:4668946/76‑2 (MQ=255) agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGCTAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagta > 1:2814440/1‑74 (MQ=255) agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagta < 2:781411/76‑3 (MQ=255) agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagta > 2:1420676/1‑74 (MQ=255) agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagta > 1:204388/1‑74 (MQ=255) agtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagta > 1:237264/1‑74 (MQ=255) gtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagtac < 2:1091890/76‑4 (MQ=255) gtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgcagtac < 2:5150104/76‑4 (MQ=255) gtTCATTAAGCCACGCTGCTGAAGCCGGTTCAGGCGATAACTGGCATTCGGGTGAAGAACTTAcgcagcgaagtac > 1:1015653/1‑73 (MQ=255) aTTACGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgcagta‑cgcag < 2:5642397/76‑1 (MQ=255) ttAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgcagta‑cgcaga < 2:5839748/76‑1 (MQ=255) ttAAGCCACGCGGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgcagta‑cgcaga > 1:3748418/1‑76 (MQ=255) tAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCagag > 2:3929542/1‑76 (MQ=255) tAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCagag > 1:5376158/1‑76 (MQ=255) aaGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGACCTTACGCAGCGCAG‑ACCGCAGAGc > 2:337359/1‑76 (MQ=255) aaGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGc > 2:2674378/1‑76 (MQ=255) ccACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCat > 1:2123656/1‑76 (MQ=255) ccACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCat < 2:3507900/76‑1 (MQ=255) ccACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCat < 1:2697222/76‑1 (MQ=255) cACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCata < 1:5138747/76‑1 (MQ=255) cACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCata > 2:5567298/1‑76 (MQ=255) gctgctGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGt > 1:4079545/1‑76 (MQ=255) gctgctGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCACATGt > 2:2355054/1‑76 (MQ=255) gctgctGAAGGCGGATCCGGCGATAACTGGCATCCAGGTGAAGAACCTACGCAGTGCAGTA‑CGCACAGCCATCTGt > 2:5103363/1‑76 (MQ=255) gctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCg < 1:3929543/76‑1 (MQ=255) gctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCg < 1:58495/76‑1 (MQ=255) gctgAAGCCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCg > 2:1409173/1‑76 (MQ=255) ctgAAGTCGGTTCAGGCGATAACTGTCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGa < 2:2064756/76‑1 (MQ=255) tgtaGTAGGTCCAGGCGCTAACTGGCGTCAGGGTGAAGACCTTACGCAGCGCAGTA‑CGCAGAGCCATCTTTTCGAc < 1:2686564/73‑1 (MQ=255) tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGAc > 2:1670316/1‑76 (MQ=255) tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGAc < 1:2674378/76‑1 (MQ=255) tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGAc < 2:3705700/76‑1 (MQ=255) tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGAc < 1:3440886/76‑1 (MQ=255) gAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACg < 1:4113388/76‑1 (MQ=255) gAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACg < 1:2179518/76‑1 (MQ=255) aaGTCGGTTCAGGCGCTAACTGTCATCCGGGTGAAGAACTTACGCAGCGCGGTG‑CGCAGAGCCATATGTTCGACgg < 2:4275149/76‑1 (MQ=255) aaGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACgg > 1:1983719/1‑76 (MQ=255) aaGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACgg < 1:3932648/76‑1 (MQ=255) aaGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACgg < 1:3304986/76‑1 (MQ=255) aGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGc < 1:5803061/76‑1 (MQ=255) gTCGGTTCAGGCGATAACTGGCATCCGTGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCa < 1:1649924/76‑1 (MQ=255) gTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgcagta‑cgcag < 2:2080511/57‑1 (MQ=255) gTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCa < 2:3119244/76‑1 (MQ=255) ggTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATaa > 1:3664031/1‑76 (MQ=255) ggTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATaa > 1:3889371/1‑76 (MQ=255) tCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGtt < 2:2423954/76‑1 (MQ=255) aGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTa < 2:2530589/76‑1 (MQ=255) ggCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTaa < 1:4728300/76‑1 (MQ=255) cGATAGCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAAcc < 2:2728933/76‑1 (MQ=255) cGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTCAcc > 2:2887733/1‑76 (MQ=255) cGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAAcc > 1:1536752/1‑76 (MQ=255) cGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAAcc < 2:5341092/76‑1 (MQ=255) gATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg > 2:1157938/1‑76 (MQ=255) gATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg < 2:1630011/76‑1 (MQ=255) gATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg > 1:2790367/1‑76 (MQ=255) aTAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGa > 2:1510639/1‑76 (MQ=255) aaCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAAc < 1:4589598/76‑1 (MQ=255) aCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACa < 1:4155659/76‑1 (MQ=255) aCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACa > 2:5232909/1‑76 (MQ=255) aCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACa > 1:2452537/1‑76 (MQ=255) aCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACa > 1:3276709/1‑76 (MQ=255) aCTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACa < 2:4448199/76‑1 (MQ=255) cTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACAt > 2:3837097/1‑76 (MQ=255) cTGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACAt < 1:1746511/76‑1 (MQ=255) tGGCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATc > 2:5378379/1‑76 (MQ=255) ggCATCCGGGTGAAGAACTTCCGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCa < 1:3981523/76‑1 (MQ=255) ggCATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCa < 1:805238/76‑1 (MQ=255) cATCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGc < 2:3428006/76‑1 (MQ=255) aTCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCg > 2:2649084/1‑76 (MQ=255) tCCGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGt < 1:4376104/76‑1 (MQ=255) tCCGGGTGAAAAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGt < 1:1023456/76‑1 (MQ=255) cGGGTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTca > 2:4761882/1‑76 (MQ=255) cGGGTGAAGAACTAACGCAGCGCAGTA‑CGCGGGGCCATATGTTCGACGGCATAAGTTTAACCGCACATCAGCGTca < 2:4934571/76‑1 (MQ=255) gggTGAAGAACTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcag < 1:3764035/76‑1 (MQ=255) tGAAGAACTTACGAAGCGCAGTA‑CGCAGAGCCATATGTGCGACGGCATAAGGTTAACCGAACATCAGCGAcagcag > 1:1823250/1‑76 (MQ=255) gaagaaCTTCCGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGa < 2:189804/76‑1 (MQ=255) gaagaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGa < 1:5487317/76‑1 (MQ=255) aagaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAt < 1:1508951/76‑1 (MQ=255) aagaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAt < 2:1334260/76‑1 (MQ=255) aagaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAt > 2:5641456/1‑76 (MQ=255) gaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc < 2:3779099/76‑1 (MQ=255) gaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc < 1:3195999/76‑1 (MQ=255) gaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc < 2:4224459/76‑1 (MQ=255) gaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc > 1:5589998/1‑76 (MQ=255) gaaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc < 2:4391027/76‑1 (MQ=255) aaCTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCg < 2:3282641/76‑1 (MQ=255) cTTACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCgag > 1:4510433/1‑76 (MQ=255) ttACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCgaga > 1:983631/1‑76 (MQ=255) tACGCAGCGCAGTA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGAt > 1:1397366/1‑76 (MQ=255) cgcagcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATca < 2:3823893/76‑2 (MQ=255) gcagcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCtt < 1:4724874/76‑1 (MQ=255) cagcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTa < 1:4565049/76‑1 (MQ=255) cagcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTa > 1:996151/1‑76 (MQ=255) agcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTAt < 2:1294287/76‑1 (MQ=255) gcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATg > 1:4074514/1‑76 (MQ=255) gcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATg < 2:3378574/76‑1 (MQ=255) gcgcagtA‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATg < 2:2442549/76‑1 (MQ=255) | CAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCAG‑A‑CGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATG > NC_000913/4103445‑4103588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |