| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,175,949 | +G | intergenic (+82/‑76) | nusG → / → rplK | NusG/50S ribosomal subunit protein L11 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,175,947 | 1 | . | G | 96.9% | 255.6 / ‑0.5 | 99 | intergenic (+80/‑78) | nusG/rplK | NusG/50S ribosomal subunit protein L11 |
| Reads supporting (aligned to +/- strand): ref base . (1/1); major base G (45/48); minor base A (1/2); total (48/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA > NC_000913/4175872‑4176017 | gCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt > 1:4436356/1‑76 (MQ=255) gATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑g > 1:4253387/1‑76 (MQ=255) gATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑g > 1:4409413/1‑76 (MQ=255) tCAAAAAATCGGCGATTTAATCGTTGCACAAGTCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggc < 1:476865/76‑3 (MQ=255) tCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggc > 2:2601226/1‑74 (MQ=255) cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑g‑ggcc > 1:4112313/1‑73 (MQ=255) cAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGAGCGATTGGAATACAATTTCGCGACTTTTGTTTTTAT‑g‑ggcc > 2:4338357/1‑73 (MQ=255) aaaaGCGGCGATTTAATCGTTGCACAAGGCGGGAGATTGGAATACAATTTCGCGCCGTTTGTTTTTATGG‑G‑CCTTg < 1:3935474/76‑1 (MQ=255) aaaGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGc > 2:5740352/1‑76 (MQ=255) aGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGccc < 1:3565319/76‑1 (MQ=255) aGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGccc < 2:4409412/76‑1 (MQ=255) aGCGGCGATTTAATCGGTGCACAAGGCGTGAGATTGGAAGACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGccc > 2:920438/1‑76 (MQ=255) cggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAACACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGt < 1:2920326/76‑1 (MQ=255) ggcgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTa < 1:5079818/76‑1 (MQ=255) ggcgAGTTAATCGTGGCACAAGGCGGGCGATTGGAATACAATGTCGCGCATGTTGGTTTTATCG‑G‑CCTTGCCCGTa > 1:2626532/1‑76 (MQ=255) cgATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTaaa < 2:430762/76‑1 (MQ=255) gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTaaaa > 2:3359185/1‑76 (MQ=255) gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTaaaa > 1:5625418/1‑76 (MQ=255) gATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTaaaa > 1:2501478/1‑76 (MQ=255) tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACg > 2:1891360/1‑76 (MQ=255) tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACg > 2:2422500/1‑76 (MQ=255) tttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATAG‑G‑CCTTGCCCGTAAAACg > 2:1876620/1‑76 (MQ=255) ttAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGa < 1:2229128/76‑1 (MQ=255) tAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAt > 1:1347728/1‑76 (MQ=255) aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAtt > 1:3375350/1‑76 (MQ=255) aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAtt > 1:1564355/1‑76 (MQ=255) aaTCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑GTCCTTGCCCGTAAAACGAtt < 1:1619709/76‑1 (MQ=255) cGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAttttt < 1:2275128/76‑1 (MQ=255) gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAtttttt < 2:5450476/76‑1 (MQ=255) gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAtttttt < 1:4376940/76‑1 (MQ=255) gTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGAtttttt > 2:1693323/1‑76 (MQ=255) ttGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTta > 2:70119/1‑76 (MQ=255) tGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTtat > 1:4324237/1‑76 (MQ=255) tGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTtat > 2:1998729/1‑76 (MQ=255) cacaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTatat > 1:2004811/1‑76 (MQ=255) acaAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATc > 1:5636473/1‑76 (MQ=255) caAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCa < 1:3927022/76‑1 (MQ=255) caAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCa > 1:2659294/1‑76 (MQ=255) aaGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCAc < 1:5740353/76‑1 (MQ=255) aGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACg > 2:4269492/1‑76 (MQ=255) gCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTCTATCACggg < 1:4173084/76‑1 (MQ=255) gCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACggg < 2:3931642/76‑1 (MQ=255) cGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACgggg > 1:109497/1‑76 (MQ=255) gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa < 1:2233919/76‑1 (MQ=255) gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa < 2:3375350/76‑1 (MQ=255) gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa < 1:920438/76‑1 (MQ=255) gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa > 1:3546/1‑76 (MQ=255) gTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGa > 1:2803489/1‑76 (MQ=255) gagaTTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGc < 2:1507147/76‑1 (MQ=255) aTTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc < 2:3637908/76‑1 (MQ=255) aTTGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctc > 1:4319416/1‑76 (MQ=255) ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGCTTTTTTATATCACGGGGAGCctct > 2:104939/1‑76 (MQ=255) ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct < 1:5759162/76‑1 (MQ=255) ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct > 1:4097857/1‑76 (MQ=255) ttGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCctct < 2:2004811/76‑1 (MQ=255) tGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCtctc < 1:5517456/76‑1 (MQ=255) tGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCtctc > 1:748927/1‑76 (MQ=255) tGGAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCtctc < 1:3030376/76‑1 (MQ=255) ggAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCTCGGGGAGCCTCTCa > 2:2941760/1‑76 (MQ=255) ggAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCa < 2:2569512/76‑1 (MQ=255) gAATCCAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag < 2:3955169/76‑1 (MQ=255) gAATACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag > 2:4553670/1‑76 (MQ=255) aaTACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga < 2:562965/76‑1 (MQ=255) aaTACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga > 1:145982/1‑76 (MQ=255) aaTACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCaga < 1:1693323/76‑1 (MQ=255) tACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg > 2:3521485/1‑76 (MQ=255) tACAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAgg < 2:1237620/76‑1 (MQ=255) aCAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 1:1371642/76‑1 (MQ=255) aCAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 1:3049725/76‑1 (MQ=255) aCAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc > 1:5355458/1‑76 (MQ=255) aCAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 1:1245853/76‑1 (MQ=255) aCAATGTCGCGCCTTTTGTTTTTAT‑GCG‑CCTTGCCCGTAAAACGAGTTTTTATATCACGGGGAGCCTCTCAGAGGc > 2:4783130/1‑76 (MQ=255) cAATTTCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCg > 1:3244516/1‑76 (MQ=255) ttCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGctat > 1:41337/1‑76 (MQ=255) tCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatt < 2:1814723/76‑1 (MQ=255) tCGCGCCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGttatt > 2:2061837/1‑76 (MQ=255) tgcgcCTTTTGTTTTTATGG‑G‑CCTAGCCCGTAAAACGATGTTTTATATCACGGGGAGCCTCTCAGAGGCGttatta < 2:79855/75‑1 (MQ=255) cgcCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAcc < 2:3546/76‑1 (MQ=255) gcCTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAccc < 2:2501478/76‑1 (MQ=255) ccTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa > 1:231492/1‑76 (MQ=255) ccTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa < 1:3569690/76‑1 (MQ=255) ccTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa < 2:5240915/76‑1 (MQ=255) ccTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTAACCa > 1:4924606/1‑76 (MQ=255) ccTTTTGTTTTGATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCa > 1:1838603/1‑76 (MQ=255) cTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa > 1:1060826/1‑76 (MQ=255) cTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa < 1:1330312/76‑1 (MQ=255) cTTTTGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa > 2:3906247/1‑76 (MQ=255) cTTTTGTTTTTATAG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCaa < 1:1876620/76‑1 (MQ=255) ttttGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAAc > 2:3786137/1‑76 (MQ=255) ttGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACtt < 1:3906248/76‑1 (MQ=255) ttGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACtt < 1:4553671/76‑1 (MQ=255) tGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATGTCACGGGGAGTCTCTCAGAGGCGTTATTACCCAACTTg < 2:4968412/76‑1 (MQ=255) tGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTg > 2:4236172/1‑76 (MQ=255) tGTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTg > 2:2386931/1‑76 (MQ=255) gTTTTTATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGa < 1:3519787/76‑1 (MQ=255) tttttATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAg > 2:5824077/1‑76 (MQ=255) tttttATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAg < 1:2422500/76‑1 (MQ=255) ttttATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg < 2:4112312/76‑1 (MQ=255) ttttATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAgg < 2:5713952/76‑1 (MQ=255) tttATGG‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACCTGAGGa > 1:750094/1‑76 (MQ=255) | GCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTAT‑G‑G‑CCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGA > NC_000913/4175872‑4176017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |