| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,593,336 | +G | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,593,335 | 1 | . | G | 99.3% | 380.7 / NA | 136 | intergenic (‑22/‑209) | yjjM/yjjN | hypothetical protein/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (52/82); minor base A (0/1); total (52/84) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 146 total aligned reads displayed.
TTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑T‑GAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATT > NC_000913/4593260‑4593405 | ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑t > 1:560196/1‑76 (MQ=255)ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑t < 2:755916/76‑1 (MQ=255) tCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑T‑g < 1:3589247/76‑1 (MQ=255) tCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCCCACTTTGCGA‑T‑g > 2:1866394/1‑76 (MQ=255) tCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATATCCGCCAGCGCACTTTGCGA‑T‑g > 1:1159889/1‑76 (MQ=255) cgcgTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑T‑gg > 2:2338992/1‑75 (MQ=255) cgcgTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGCACATTTCCGCCAGCGCCCTTTGCGC‑T‑gg > 2:5227053/1‑75 (MQ=255) cgTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑T‑ggaa < 2:3307984/76‑4 (MQ=255) cgTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑T‑ggaa > 1:3360756/1‑73 (MQ=255) aGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTgg < 1:4862680/76‑1 (MQ=255) gTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTggg < 2:4736564/76‑1 (MQ=255) tGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTgggg < 1:5671735/76‑1 (MQ=255) cTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAg < 1:2724337/76‑1 (MQ=255) tGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAgg < 1:700681/76‑1 (MQ=255) gagaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGG‑TGGGAGCGGGGAAggg > 1:2907298/1‑76 (MQ=255) gagaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAggg < 1:3126005/76‑1 (MQ=255) agaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGa < 1:2411474/76‑1 (MQ=255) agaATATGACGCACTGTGGCGCGGCTGATGTTGTACATTTCCGCAAGCGCACGTTGCGA‑TGGCAGTGGGGAAGGGa > 2:1444315/1‑76 (MQ=255) gaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGat > 1:3664671/1‑76 (MQ=255) gaATATGACGCACTGTGGTGCGGCTGATGGTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGat > 1:1550598/1‑76 (MQ=255) aaTATGGCGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGata < 2:3042991/76‑1 (MQ=255) aaTATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGata > 1:450248/1‑76 (MQ=255) aaTATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGata < 2:3979211/76‑1 (MQ=255) atatGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGACGTGGGGAAAGGatat > 1:1096071/1‑76 (MQ=255) atatGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGgtat > 2:797514/1‑76 (MQ=255) tatGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATg < 2:4627403/76‑1 (MQ=255) tatGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATg < 2:4489065/76‑1 (MQ=255) tgtcGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGAc < 2:5771844/73‑1 (MQ=255) gACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGAcc < 1:2318357/76‑1 (MQ=255) gACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGAcc > 1:5575787/1‑76 (MQ=255) aCGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGAccc > 2:4295072/1‑76 (MQ=255) cgcTGTGGTGCGGCTGATGTAGTACATTTCCGCCAGCTCACTTTGCGA‑TGGACGTGGGGCAGGGATATGACCCcgc < 1:3213306/74‑1 (MQ=255) aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCcgcg > 2:32207/1‑76 (MQ=255) aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCcgcg < 2:2238007/76‑1 (MQ=255) aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCcgcg > 1:373718/1‑76 (MQ=255) aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCcgcg < 2:560196/76‑1 (MQ=255) tgtgGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGcc < 2:3003731/76‑1 (MQ=255) tggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGGAGTGGGGAAGGGATATGACACCGCGCCat > 2:2106963/1‑76 (MQ=255) tggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCat < 1:202507/76‑1 (MQ=255) tggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCat < 1:3325892/76‑1 (MQ=255) tggggCGGCTGATGTTGTGCATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCat < 2:1667906/76‑1 (MQ=255) gggtgTGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCat < 2:519653/75‑1 (MQ=255) ggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCata < 2:2814270/76‑1 (MQ=255) ggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCata > 2:1208674/1‑76 (MQ=255) gtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCatat < 2:3543829/76‑1 (MQ=255) tgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATatc < 1:654485/76‑1 (MQ=255) tgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATatc > 2:2408331/1‑76 (MQ=255) ggggCTGATGTTGTGCATTTGCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATatca < 2:522244/74‑1 (MQ=255) ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATatcatc > 2:5129062/1‑76 (MQ=255) ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATatcatc > 2:3342703/1‑76 (MQ=255) ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGAACCCGAGACATatcatc > 1:4842739/1‑76 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca > 1:890875/1‑76 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca < 1:2589271/76‑1 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca > 2:3969556/1‑76 (MQ=255) cTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCaa > 2:3112173/1‑76 (MQ=255) cTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCaa > 2:2260601/1‑76 (MQ=255) tGATGTTTTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:883804/76‑1 (MQ=255) tGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:497900/76‑1 (MQ=255) tGATGTTGTACATTTCCGCCAGCGCACTGTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:2492626/76‑1 (MQ=255) tGAGGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:921983/76‑1 (MQ=255) gATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATg > 1:4933964/1‑76 (MQ=255) gtgttgtACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGa < 2:285172/75‑1 (MQ=255) aTGTTGTACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGa > 1:4025390/1‑76 (MQ=255) gttgtACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAcc < 1:4992043/76‑1 (MQ=255) tgtACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTg < 2:697427/76‑1 (MQ=255) tgtACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTg > 2:3823402/1‑76 (MQ=255) tgtACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTg > 2:679196/1‑76 (MQ=255) tgtACATATCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTg < 2:1159889/76‑1 (MQ=255) tACATTTCCGCCAGCGCACTTTGCGAGG‑GAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGt < 2:2907298/76‑1 (MQ=255) tACATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGt < 1:4026437/76‑1 (MQ=255) aCATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGtt < 1:2858260/76‑1 (MQ=255) cATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCCATGACCTGGTTa > 2:2577906/1‑76 (MQ=255) cATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTa < 1:1996338/76‑1 (MQ=255) cATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTa > 1:827128/1‑76 (MQ=255) cATTTCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTa > 2:4410359/1‑76 (MQ=255) tttCCGCCAGCGCGCGTTGCGA‑TGGAAGTTGTGAAGGGATAGGACCCCGCGCCATATCATCAATGACCTGGTTAAt < 2:2610408/76‑1 (MQ=255) tttCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAAt < 1:4356155/76‑1 (MQ=255) ttCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGCCCCCGCGCCATATCATCAATGACCTGGTTAATc < 2:2916754/76‑1 (MQ=255) ttCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATc > 1:3862847/1‑76 (MQ=255) ttCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATc < 2:1916970/76‑1 (MQ=255) ttCCGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATc < 1:4295073/76‑1 (MQ=255) ccGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATcac < 1:4410360/76‑1 (MQ=255) cGCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATcaca > 1:4689898/1‑76 (MQ=255) gCCAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAt < 1:2260601/76‑1 (MQ=255) ccAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAtt > 1:3591252/1‑76 (MQ=255) ccAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAtt > 1:2716969/1‑76 (MQ=255) ccAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAtt > 2:3579638/1‑76 (MQ=255) cAGCGCGCTGTGCGT‑TGGAAGTGGGGAAGGGATATGACGCCGCGCCGTATCATCAATGACCTGGTTAATCCCGTtg < 2:1339214/76‑1 (MQ=255) cAGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtg < 2:445340/76‑1 (MQ=255) aGCGCACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgt < 1:1089237/76‑1 (MQ=255) gcACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGGCCTGGTTAATCACATTGTGGc < 2:5667446/76‑1 (MQ=255) gcACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGc > 2:5742125/1‑76 (MQ=255) gcACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGc > 2:1753326/1‑76 (MQ=255) cACTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCg > 1:1598380/1‑76 (MQ=255) aCTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGt < 1:5742126/76‑1 (MQ=255) cTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTa < 2:4842738/76‑1 (MQ=255) cTTTGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTa < 1:2408331/76‑1 (MQ=255) tttGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTaa > 1:4903941/1‑76 (MQ=255) ttGCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTaaa > 1:5370273/1‑76 (MQ=255) gCGA‑TGGAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAAtt < 2:5079833/76‑1 (MQ=255) | TTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGA‑T‑GAAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTAAATT > NC_000913/4593260‑4593405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |