| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,107,469 | +C | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,107,469 | 1 | . | C | 97.3% | 386.3 / 5.0 | 147 | intergenic (‑296/‑101) | b2965/yqgA | ornithine decarboxylase isozyme/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (3/1); new base C (58/85); total (61/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
Only 100 of 155 total aligned reads displayed.
GAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTT‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGA > NC_000913/3107394‑3107538 | gaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttcg < 1:4743166/76‑3 (MQ=255) gaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttcg > 2:5247773/1‑74 (MQ=255) gaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttcg > 1:3378694/1‑74 (MQ=255) gaATGTAAGGAGAGGGCGTGCCTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttcg > 1:2979834/1‑74 (MQ=255) aaTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGCGGAGAAAATTCGCGCAATCATGGCACC‑cttcgc > 2:890803/1‑73 (MQ=255) aaTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttcgc > 2:1621133/1‑73 (MQ=255) tAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTaaa < 1:3873135/76‑1 (MQ=255) aaGGAGATGGCGTGCATCGGGCAAACTCCGTACATAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAg < 2:112391/76‑1 (MQ=255) aaGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAg > 1:4493589/1‑76 (MQ=255) aGGAGATGGCGTGCATCGGGCGAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGc < 2:4857552/76‑1 (MQ=255) gagaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGt < 2:5131462/76‑1 (MQ=255) gagaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGt < 1:5754290/76‑1 (MQ=255) agaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTg > 2:3240784/1‑76 (MQ=255) gaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGt < 2:4063102/74‑1 (MQ=255) gaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGt > 1:4063103/1‑74 (MQ=255) gaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGc > 2:635450/1‑76 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa < 1:3346547/76‑1 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa < 2:1678277/76‑1 (MQ=255) ggCGTGCATCGGGCAACCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAg < 1:4630343/76‑1 (MQ=255) ggCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAg < 1:825387/76‑1 (MQ=255) ggCGGGCATAGGACAAATTCCCGACGGGGAGGAGAAAGTGAGCGCTGTCATGGCACC‑TTTCGCTAAAGCGTGcgag > 1:770423/1‑73 (MQ=255) gCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGc < 1:77019/76‑1 (MQ=255) cGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGcc > 1:227980/1‑76 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCa > 1:1075402/1‑76 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCa > 1:4128036/1‑76 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TGTCGCTAAAGCGTGCAAGCCa > 2:3805963/1‑76 (MQ=255) gaaTCGGGCAAACTCCGAACAGAGAGGAGAAAATTAGAGCAATCATGGAACCATTC‑GCTAAAGCGTGCAAGCCAgg > 1:5235057/3‑76 (MQ=255) gCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAgg > 1:2558897/1‑76 (MQ=255) gCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAgg < 1:3524937/76‑1 (MQ=255) gCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAgg > 1:1865460/1‑76 (MQ=255) aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGAc > 1:5011154/1‑76 (MQ=255) cGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAGGCGTGCAAGCCAGGACtt < 2:518666/76‑1 (MQ=255) cGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGAAtt > 1:5620211/1‑76 (MQ=255) gggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACttt < 1:3618332/76‑1 (MQ=255) gggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACttt < 2:1222898/76‑1 (MQ=255) gggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACttt > 2:3878164/1‑76 (MQ=255) ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCACGCCAGGACTTTg > 2:1752074/1‑76 (MQ=255) ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTg < 2:1646012/76‑1 (MQ=255) gCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGc > 1:5346383/1‑76 (MQ=255) gCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGc > 1:3271586/1‑76 (MQ=255) cAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCg > 2:1891781/1‑76 (MQ=255) aaaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGa < 2:358138/76‑1 (MQ=255) aaaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGa < 2:3191627/76‑1 (MQ=255) aaaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGa > 1:3436186/1‑76 (MQ=255) aaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaa > 1:21441/1‑76 (MQ=255) aaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaa < 1:271958/76‑1 (MQ=255) cTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaaca < 1:2998149/76‑1 (MQ=255) cTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaaca > 1:3180115/1‑76 (MQ=255) tCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaa < 1:1628431/76‑1 (MQ=255) tCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaa < 2:4128035/76‑1 (MQ=255) tCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaa > 2:2100928/1‑76 (MQ=255) tCCGTACAGAAAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaa < 1:573661/76‑1 (MQ=255) ccGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaa < 2:4194814/76‑1 (MQ=255) ccGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaa < 2:2299635/76‑1 (MQ=255) cGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacacac > 2:1034052/1‑76 (MQ=255) cGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaac > 1:1483481/1‑76 (MQ=255) cGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaac < 1:5401460/76‑1 (MQ=255) gTACAGAGAGGAGAAAATTCGCGCAATCGTGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca < 1:3772332/76‑1 (MQ=255) gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca < 2:3875942/76‑1 (MQ=255) gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca < 2:2541135/76‑1 (MQ=255) tACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAacaaacaa < 2:4778852/76‑1 (MQ=255) tACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAacaaacaa < 1:4035892/76‑1 (MQ=255) aCAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGCACAAACAAg > 2:1896636/1‑76 (MQ=255) aCAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAg > 1:2515455/1‑76 (MQ=255) cAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGc > 1:2308904/1‑76 (MQ=255) agagagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGcc < 2:940142/76‑1 (MQ=255) agagagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGcc < 2:696327/76‑1 (MQ=255) agagagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGcc > 1:2466121/1‑76 (MQ=255) agagGAGAAAATTCGCGTAATCATGGCCCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAt < 2:5671227/76‑1 (MQ=255) ggagAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGa < 2:1034257/76‑1 (MQ=255) gagaAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAc < 1:5566194/76‑1 (MQ=255) agaAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACg < 2:2935526/76‑1 (MQ=255) agaAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACg > 1:442066/1‑76 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc < 2:3217119/76‑1 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc < 1:4122168/76‑1 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc < 2:2064026/76‑1 (MQ=255) aTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCAcc > 1:4552545/1‑76 (MQ=255) aTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCAcc < 2:4478204/76‑1 (MQ=255) aTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCAcc < 1:788593/76‑1 (MQ=255) ttCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCa < 1:3228010/76‑1 (MQ=255) cgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACg < 1:170687/76‑1 (MQ=255) gcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg > 2:4490983/1‑76 (MQ=255) gcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg < 1:5095094/76‑1 (MQ=255) cAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGt < 1:723850/76‑1 (MQ=255) aaTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTc < 1:2139847/76‑1 (MQ=255) aaTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTc > 2:670790/1‑76 (MQ=255) aaTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTc < 1:1785901/76‑1 (MQ=255) aTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCa > 1:3619277/1‑76 (MQ=255) tgaTGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat < 2:1804686/74‑1 (MQ=255) tCATGGCGCC‑TTTCGCTAAAGCGTGCACGCCAGGCCTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat < 2:81423/76‑1 (MQ=255) cATGGCTCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCata < 1:3691310/76‑1 (MQ=255) cATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCata > 2:3589741/1‑76 (MQ=255) aTGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataa > 1:1443629/1‑76 (MQ=255) tGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGGCTTTGCGAACAAACAGGCCATCGACGGCACCAAACGTTCgtaat < 2:395494/76‑1 (MQ=255) gggCGCC‑TTTCGCTAAAGCGTGCAAGCCGGGACTTTGCGAACAACCAAGCCAGCGACGGCACCAAACGGTCataat < 2:2979834/75‑1 (MQ=255) ggCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataata < 1:2703466/76‑1 (MQ=255) gCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAtaataa < 2:3116888/76‑1 (MQ=255) gCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAtaataa > 2:2371219/1‑76 (MQ=255) cACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAg > 1:117734/1‑76 (MQ=255) aCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGa > 1:4662876/1‑76 (MQ=255) | GAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTT‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGA > NC_000913/3107394‑3107538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |