BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,115,116	+C	coding (2013/2028 nt)	b2974 ←	putative endoglucanase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,115,115	1	.	C	98.6%	386.3 / ‑1.2	144	coding (2014/2028 nt)	b2974	putative endoglucanase
Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (56/85); total (57/87)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 150 total aligned reads displayed.

CGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑T‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG  >  NC_000913/3115040‑3115185

cGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCAtt‑t                                                                         <  2:3921723/76‑1 (MQ=255)

  cAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑T‑cc                                                                      <  1:3500870/76‑2 (MQ=255)

  cAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑T‑cc                                                                      >  2:4284065/1‑75 (MQ=255)

   aGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑T‑cct                                                                     >  1:3516631/1‑74 (MQ=255)

   aGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑T‑cct                                                                     >  1:1577788/1‑74 (MQ=255)

    gCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACACATTCAAAGCCGTTAAGGCTCAGCAGCGGCATT‑T‑cctg                                                                    >  2:1000409/1‑73 (MQ=255)

       ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCgg                                                                  >  1:5631301/1‑76 (MQ=255)

       ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCgg                                                                  >  1:1306007/1‑76 (MQ=255)

       ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCgg                                                                  >  1:3025590/1‑76 (MQ=255)

        gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGa                                                                 >  2:1102971/1‑76 (MQ=255)

        gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGa                                                                 <  1:4795762/76‑1 (MQ=255)

        gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGa                                                                 >  1:2142800/1‑76 (MQ=255)

         aTTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGAt                                                                <  1:1514579/76‑1 (MQ=255)

         aTTGCATAAGGATCGTTACCCACCTGAGGCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGAt                                                                <  1:1527112/76‑1 (MQ=255)

          ttGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATc                                                               <  2:2197029/76‑1 (MQ=255)

          ttGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATc                                                               >  2:1669558/1‑76 (MQ=255)

            gCATAAGGATCGTTCCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCga                                                             <  2:615274/76‑1 (MQ=255)

             cATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCgag                                                            <  2:3293685/76‑1 (MQ=255)

               tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGAt                                                          >  2:4059837/1‑76 (MQ=255)

               gaaGGAGCGTGTCCCGGCTGAGTGACATATTCAAAGCCGTTAAGGGTCAGCAGCGGCATT‑TCCTGCGGATCGAGAt                                                          <  2:217067/75‑1 (MQ=255)

                aaGGCTCGTTACCCCCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATc                                                         <  2:5535196/76‑1 (MQ=255)

                aaGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATc                                                         <  1:1801041/76‑1 (MQ=255)

                aaGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATc                                                         <  1:3261612/76‑1 (MQ=255)

                 aGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCg                                                        <  2:3936922/76‑1 (MQ=255)

                 aGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCg                                                        >  1:1737872/1‑76 (MQ=255)

                  ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGc                                                       >  1:5692477/1‑76 (MQ=255)

                  ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGc                                                       <  1:63601/76‑1 (MQ=255)

                  ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGc                                                       >  2:4677432/1‑76 (MQ=255)

                  ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGc                                                       <  2:4866053/76‑1 (MQ=255)

                  ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGc                                                       <  2:5255791/76‑1 (MQ=255)

                   gATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGcc                                                      >  2:4657456/1‑76 (MQ=255)

                    gtCGTTACCCCCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCa                                                     <  2:720361/75‑1 (MQ=255)

                     tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCAt                                                    <  1:1452976/76‑1 (MQ=255)

                      cGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATa                                                   >  1:2959041/1‑76 (MQ=255)

                       gTTGCCCACCTGAGTCACATATGCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAg                                                  <  2:2692775/76‑1 (MQ=255)

                        ttACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGc                                                 >  2:3178619/1‑76 (MQ=255)

                        ttACCCACCGGAGTCCCAGAGTCAAGGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGc                                                 <  2:2255760/76‑1 (MQ=255)

                          aCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCGGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTa                                               <  2:5831418/76‑1 (MQ=255)

                          aCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTa                                               >  1:2036366/1‑76 (MQ=255)

                            cccccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACt                                             <  2:4891201/73‑1 (MQ=255)

                             cACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACtt                                            <  1:1143072/76‑1 (MQ=255)

                              cccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTa                                           <  1:3351614/75‑1 (MQ=255)

                              aCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTa                                           <  2:814915/76‑1 (MQ=255)

                               ccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTaa                                          >  1:5208581/1‑76 (MQ=255)

                                 tGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAAt                                        <  1:2869958/76‑1 (MQ=255)

                                 tGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAAt                                        <  2:1775587/76‑1 (MQ=255)

                                 tGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAAt                                        <  2:69059/76‑1 (MQ=255)

                                 ggAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGCTCGCCATAGCTACTTAAAt                                        <  2:4662796/75‑1 (MQ=255)

                                   aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGc                                      <  2:1306007/76‑1 (MQ=255)

                                   aGTCACATATTCAAAGCCGTAAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGc                                      <  1:4583042/76‑1 (MQ=255)

                                    gTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCt                                     <  1:1202843/76‑1 (MQ=255)

                                     tCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTc                                    >  2:4714578/1‑76 (MQ=255)

                                       acaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCaa                                  <  2:2449117/76‑1 (MQ=255)

                                       acaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCaa                                  >  2:5425161/1‑76 (MQ=255)

                                       acaTATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCaa                                  >  1:5122927/1‑76 (MQ=255)

                                        caTATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTTAATGCTCAAc                                 <  1:5625191/76‑1 (MQ=255)

                                        caTATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAc                                 <  1:5173209/76‑1 (MQ=255)

                                          tatTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                               >  2:1725283/1‑76 (MQ=255)

                                          tatNCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                               <  2:3064936/76‑1 (MQ=255)

                                           atTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACaga                              >  1:3795412/1‑76 (MQ=255)

                                             tCAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                            >  2:2362777/1‑76 (MQ=255)

                                             tCAAAGCCGTTAAGGATCAGCACCGCCATT‑TCCTGCGGATCGCGATCGCCATAGCAACCTAAACCCTCAACacagt                            >  2:5533406/1‑75 (MQ=255)

                                             tCAAAGCCGTTAAGGAGCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTTCTTAAATGCTCAACAgaga                            >  2:3551558/1‑76 (MQ=255)

                                              cAAAGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAt                           <  1:4541569/76‑1 (MQ=255)

                                              cAAAGCAGTTAAGTATCAGCAGCGGCTTT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAt                           <  1:2077953/76‑1 (MQ=255)

                                               aaaGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATg                          >  2:5158723/1‑76 (MQ=255)

                                               aaaGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATg                          >  1:1379661/1‑76 (MQ=255)

                                                aaGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCCACAGAGATGc                         >  2:3898739/1‑76 (MQ=255)

                                                aaGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                         >  2:4297020/1‑76 (MQ=255)

                                                aaGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                         <  1:4421840/76‑1 (MQ=255)

                                                aaGCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                         >  1:1098308/1‑76 (MQ=255)

                                                aaGCCGGTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGc                         >  1:3681207/1‑76 (MQ=255)

                                                  gCCGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGccc                       >  1:3740660/1‑76 (MQ=255)

                                                    cGTTAAGGATCCGCAGCGGCATT‑TCCTGCGGGTCGTGTTCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                     <  2:3465645/76‑1 (MQ=255)

                                                    cGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                     <  2:1472429/76‑1 (MQ=255)

                                                    cGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                     <  2:2525145/76‑1 (MQ=255)

                                                    cGTTAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                     <  1:2558346/76‑1 (MQ=255)

                                                       tAAGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaaa                  <  2:2408434/76‑1 (MQ=255)

                                                        aaGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCaaaa                 <  1:5082016/76‑1 (MQ=255)

                                                         aGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAt                >  2:5816270/1‑76 (MQ=255)

                                                         aGGATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAt                >  2:4092299/1‑76 (MQ=255)

                                                         aGGATCAGCAGCGGAATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAt                >  1:3677055/1‑76 (MQ=255)

                                                          ggATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATc               <  1:4882652/76‑1 (MQ=255)

                                                           gATCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATcc              >  2:3764230/1‑76 (MQ=255)

                                                            aTCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCg             >  1:4888431/1‑76 (MQ=255)

                                                            aTCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCg             >  1:2154495/1‑76 (MQ=255)

                                                             tCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATCGCTACTTAAATGCTCAACAGAGATGCCCGCACACTCCgg            >  2:305451/1‑76 (MQ=255)

                                                             tCAGCAGCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCgg            >  2:1599262/1‑76 (MQ=255)

                                                              cagcagCGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa           >  2:905722/1‑76 (MQ=255)

                                                               ggcagcGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAt          <  2:645053/75‑1 (MQ=255)

                                                                gcagcGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg         <  1:3178619/76‑1 (MQ=255)

                                                                gcagcGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg         >  2:2086831/1‑76 (MQ=255)

                                                                gcagcGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg         <  1:4633453/76‑1 (MQ=255)

                                                                  agcGGCATTGC‑CGGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGa       <  2:5473536/76‑1 (MQ=255)

                                                                  agcGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGa       <  1:1603800/76‑1 (MQ=255)

                                                                    cGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAg     <  1:2255894/76‑1 (MQ=255)

                                                                    cGGCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAg     <  1:2244782/76‑1 (MQ=255)

                                                                      gCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAACTCCGGATGGCAGTc   >  1:419003/1‑76 (MQ=255)

                                                                      gCATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTc   <  1:3320240/76‑1 (MQ=255)

                                                                       cATT‑TCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCg  <  2:1406250/76‑1 (MQ=255)

CGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCATT‑T‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG  >  NC_000913/3115040‑3115185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`