| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,236,735 | +C | coding (514/966 nt) | ygjT → | putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,236,734 | 1 | . | C | 98.5% | 345.3 / ‑1.8 | 129 | coding (513/966 nt) | ygjT | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (66/61); total (67/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 143 total aligned reads displayed.
CTTCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AG‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCG > NC_000913/3236659‑3236805 | cTTCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag > 1:5447655/1‑76 (MQ=255)cTTCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag < 2:3175660/76‑1 (MQ=255) ttCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCCTGAAGATGAATCAGGCATTGGCGACA‑Cg‑c > 2:5103952/1‑76 (MQ=255) ttCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag‑c > 2:5063972/1‑76 (MQ=255) ttCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag‑c > 1:745376/1‑76 (MQ=255) cGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag‑ccg < 1:2482005/76‑3 (MQ=255) ggTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag‑ccgc > 1:1195734/1‑73 (MQ=255) ggTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag‑ccgc > 1:3961207/1‑73 (MQ=255) ggTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑Ag‑ccgc > 2:2274144/1‑73 (MQ=255) gCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTgg < 1:3535373/76‑1 (MQ=255) gcTTCCTGGTTTTTGCCGGCGGGAAGGTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGt < 2:514562/75‑1 (MQ=255) ccTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGt < 1:2638202/76‑1 (MQ=255) ttCCTGCTGTTTCCCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTgc < 2:2073479/76‑1 (MQ=255) ttCCTGCGGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTgc < 2:2656929/76‑1 (MQ=255) tCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑GG‑C‑CCCGgcgcgc > 2:235952/1‑76 (MQ=255) tCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTgcg > 2:1440181/1‑76 (MQ=255) tCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTgcg > 2:1439303/1‑76 (MQ=255) ccTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTgcgc > 1:2075715/1‑76 (MQ=255) ccTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTgcgc > 1:3931500/1‑76 (MQ=255) ctgctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCt > 2:3621744/1‑76 (MQ=255) ctgctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCt < 1:4894239/76‑1 (MQ=255) ctgctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCt > 1:410483/1‑76 (MQ=255) ctgctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCt < 1:1747926/76‑1 (MQ=255) tgctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTg > 1:4734021/1‑76 (MQ=255) ctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGc < 2:3778695/76‑1 (MQ=255) ctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGc < 1:3036801/76‑1 (MQ=255) ctgTTTACCGGCGTGAAGAGGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGc < 2:4684002/76‑1 (MQ=255) tgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCt < 1:4367772/76‑1 (MQ=255) gTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTa > 2:858987/1‑76 (MQ=255) tttCCCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTAc < 1:2266760/76‑1 (MQ=255) tACCGGGGTGAAGAGGGCGCTCGCCCATGAAGATGAATCGGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTAcgc < 2:1040122/76‑1 (MQ=255) aCCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTAcgcg > 2:4125169/1‑76 (MQ=255) ccGGTGTGGAGGTGGCGCGCGCCCAGGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCgg < 2:5238077/76‑1 (MQ=255) ccGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCgg < 1:5101768/76‑1 (MQ=255) ccGGCGTGAAGAGGGCGCTCGCCGATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCgg < 2:1317441/76‑1 (MQ=255) cGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGGt < 2:2826309/76‑1 (MQ=255) cGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATAAGGCATTGGCGAAA‑AGCC‑NNTGGTGCGCTGGCTACGCGGt < 1:1705332/76‑1 (MQ=255) cGGCGTGAAGATGGCGCTCGCCCATGAAGAGGAATCAGGCATTGGCGACA‑AGCC‑GATGGTGAGCAGGGTACGCGGt > 1:3129164/1‑76 (MQ=255) gCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCgggca > 1:1127480/1‑73 (MQ=255) gCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGGtca > 1:3898696/1‑74 (MQ=255) tGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCAttt < 1:3856441/76‑1 (MQ=255) ggAAGATGGGGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCAttt < 2:3229131/75‑1 (MQ=255) gAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTg < 1:1834191/76‑1 (MQ=255) gAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTg > 1:5336535/1‑76 (MQ=255) agagGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcg < 2:3227959/76‑1 (MQ=255) aGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcc > 2:4777973/1‑75 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc > 1:5049455/1‑76 (MQ=255) aTGTCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa < 2:4479087/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa < 1:5203569/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa > 1:2870587/1‑76 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa > 1:1084157/1‑76 (MQ=255) tGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCAt < 1:2574777/76‑1 (MQ=255) ggCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATg < 1:5502795/76‑1 (MQ=255) ggCGCGCGCCCATGAAGAGGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATg < 2:5632012/76‑1 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAc > 1:5786023/1‑76 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAc > 1:2430296/1‑76 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AG‑CAGCTGGTGCGCTGGCTACGCGG‑GCATTGGCGCAtcgc > 1:645163/1‑73 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc > 2:4375270/1‑76 (MQ=255) gcTCGCCCATGAAGAGGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc < 1:3084774/76‑1 (MQ=255) cTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCg < 1:4458816/76‑1 (MQ=255) tCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCCTTACCGa > 2:1775365/1‑76 (MQ=255) tCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGa > 1:1754491/1‑76 (MQ=255) ccGCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGa < 1:632907/75‑1 (MQ=255) cGCCCAGGAAGATGAATCGGGCATGGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGac < 2:2995667/76‑1 (MQ=255) gCCCATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca > 2:2742635/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑GCATTTGCGCCTCACCGAcccc > 2:620355/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGC‑GATCATTTGCGCATGACCGACAcc > 1:1957900/1‑76 (MQ=255) ccATGAAGAGGAATCAGGCAGTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACAcc < 2:4027373/76‑1 (MQ=255) aTGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCAt < 1:492998/76‑1 (MQ=255) aTGAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCAt < 1:4722949/76‑1 (MQ=255) aTGAAGAGGAATCGGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCAt < 2:3809038/76‑1 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 2:3553471/1‑76 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:3426570/1‑76 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:3661959/1‑76 (MQ=255) gAAGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg > 1:2859897/1‑76 (MQ=255) agagGAATCAGGCATGGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:2263313/76‑1 (MQ=255) aGATGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:3718913/76‑1 (MQ=255) aTGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACaa < 1:3691692/76‑1 (MQ=255) aTGAACCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACaa < 2:5305149/76‑1 (MQ=255) tGAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAAc < 1:5799894/76‑1 (MQ=255) gtaaTGAGGCGTTGGCGGCG‑AGCC‑GCTGGTGCGGTGGCTACGCGG‑TCATTTGCGCATGGCCGACGCCATCGACAAc < 2:1988344/74‑1 (MQ=255) gAATCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACg > 1:3376095/1‑76 (MQ=255) actCAGACATGGGCGACAGTG‑C‑TCTGGTGCGCTGGCAACGC‑GTTCATTTGCGCCTGCCCGACACCATCGACAACGa < 1:570939/74‑1 (MQ=255) tCAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCCTTTGCGCATGACCGCCACCACCGACAACGAGc > 2:749009/1‑76 (MQ=255) cAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCa > 2:3098365/1‑76 (MQ=255) cAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCa < 1:2710798/76‑1 (MQ=255) cAGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGC‑CTGCATTTGCGCATGAACGACACCATCGACAACGATCa > 1:3995310/1‑76 (MQ=255) aGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAt > 1:5824308/1‑76 (MQ=255) aGGCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAt < 1:729133/76‑1 (MQ=255) ggCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAtt > 1:1073020/1‑76 (MQ=255) gCATTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAttt < 1:5076018/76‑1 (MQ=255) aTTGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt < 1:82894/76‑1 (MQ=255) ttGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCtt < 1:3553471/76‑1 (MQ=255) tGGCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCttt > 1:1004348/1‑76 (MQ=255) ggCGACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtg > 2:2268593/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc > 1:4131595/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc > 2:4144264/1‑76 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc < 1:1852365/76‑1 (MQ=255) gACA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTATTTGTGc > 2:3122391/1‑76 (MQ=255) aCA‑AGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCg > 1:5179992/1‑76 (MQ=255) | CTTCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACA‑AG‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCG > NC_000913/3236659‑3236805 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |