Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,237,242 +C intergenic (+55/‑342) ygjT → / → ygjU putative transport protein/putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,237,2401.C100.0% 277.6 / NA 103intergenic (+53/‑344)ygjT/ygjUputative transport protein/putative transport protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (54/49);  total (54/49)

Only 100 of 128 total aligned reads displayed.

ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCTCTCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCA  >  NC_000913/3237165‑3237308
                                                                            |                                                                      
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTGACATGAGCACCGTTTtct                                                                         >  1:1863358/1‑76 (MQ=255)
aTGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct                                                                         >  2:3600122/1‑76 (MQ=255)
 tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctc                                                                       >  1:4665611/1‑76 (MQ=255)
 tGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctc                                                                       <  2:1083536/76‑1 (MQ=255)
  gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctcc                                                                      <  1:1134415/76‑1 (MQ=255)
   aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccc                                                                     >  1:3266742/1‑75 (MQ=255)
    tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccct                                                                    >  2:2793553/1‑74 (MQ=255)
     aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccctc                                                                   >  2:1266051/1‑73 (MQ=255)
     aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccctc                                                                   >  2:1288923/1‑73 (MQ=255)
     aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccctc                                                                   >  1:2329389/1‑73 (MQ=255)
     aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccctc                                                                   >  1:1979482/1‑73 (MQ=255)
     aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctccctc                                                                   <  1:1910388/76‑4 (MQ=255)
        cagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctctcc                                                                <  1:2793553/76‑1 (MQ=255)
         agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctctccc                                                               <  2:2412133/76‑2 (MQ=255)
          gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctctccct                                                              >  2:2219281/1‑74 (MQ=255)
           cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctctccctt                                                             <  2:2470364/76‑4 (MQ=255)
              ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCTCCGTTTTCTCCCTCTCCCTTCCa                                                           <  1:3407960/76‑1 (MQ=255)
              ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCa                                                           >  1:238219/1‑76 (MQ=255)
              ggTGGATAATTTTTAATCCGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCa                                                           <  1:3165344/76‑1 (MQ=255)
               gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctc                                                                       >  1:237608/1‑62 (MQ=255)
               gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtctc                                                                       <  2:237608/62‑1 (MQ=255)
               gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAg                                                         <  2:1580608/76‑1 (MQ=255)
                tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAgg                                                        <  2:3592774/76‑1 (MQ=255)
                tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAgg                                                        >  2:1615877/1‑76 (MQ=255)
                 ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAggg                                                       >  2:3299158/1‑76 (MQ=255)
                  gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGga                                                      >  2:406015/1‑76 (MQ=255)
                   aTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctctcc                                                                <  2:2569904/65‑1 (MQ=255)
                   aTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctctcc                                                                >  1:2569904/1‑65 (MQ=255)
                    tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGgaga                                                    >  1:1584178/1‑76 (MQ=255)
                    tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGgaga                                                    <  1:4557008/76‑1 (MQ=255)
                     aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGagag                                                   <  1:4627068/76‑1 (MQ=255)
                      aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGagagt                                                  <  1:1598257/76‑2 (MQ=255)
                      aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAgg                                                  <  2:3221219/76‑1 (MQ=255)
                      aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAgg                                                  <  2:4665610/76‑1 (MQ=255)
                      aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAgg                                                  >  1:319399/1‑76 (MQ=255)
                      aTTTTTAATCTGCCTAAGCCGTGTACCCTGGCACTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAgg                                                  >  2:393851/1‑76 (MQ=255)
                       tgtttAATCTGCCTCAGCCGTGTGCCCGGTCATTAACATGAGCGCCTTCTTCTCCCTCTCCCTTCCAGGGAGAggg                                                 <  2:155397/74‑1 (MQ=255)
                        ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGt                                                <  1:3436644/76‑1 (MQ=255)
                        ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGCTTTATCCCTCTCCCTTCCACAGAGAGGGt                                                >  1:2653529/1‑76 (MQ=255)
                         tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTc                                               <  1:3373337/76‑1 (MQ=255)
                         tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTc                                               <  2:3571411/76‑1 (MQ=255)
                         tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACACGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTc                                               <  2:5188254/76‑1 (MQ=255)
                           tAATCTGCCTAAGCCGTGTCCCCTGTCCTTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGTAGCGGGTCgg                                             >  1:3310159/1‑76 (MQ=255)
                           tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCgg                                             >  1:3287921/1‑76 (MQ=255)
                            aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCggg                                            >  2:1931416/1‑76 (MQ=255)
                            aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCggg                                            >  2:4411764/1‑76 (MQ=255)
                            aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCggg                                            >  1:5180342/1‑76 (MQ=255)
                            aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCggg                                            <  2:3754070/76‑1 (MQ=255)
                             aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCgggg                                           >  2:560003/1‑76 (MQ=255)
                             aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCgggg                                           <  1:5844046/76‑1 (MQ=255)
                             aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCgggg                                           <  1:3072099/76‑1 (MQ=255)
                              tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGt                                          <  1:5652134/76‑1 (MQ=255)
                              tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGt                                          <  2:2965943/76‑1 (MQ=255)
                               cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGCCGGGGTg                                         >  2:720258/1‑76 (MQ=25)
                                tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGa                                        <  2:3266742/76‑1 (MQ=255)
                                 gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAg                                       <  1:519968/76‑1 (MQ=38)
                                 gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAg                                       <  2:4413002/76‑1 (MQ=38)
                                 gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGGGAg                                       >  2:4420495/1‑76 (MQ=38)
                                   cTAAGCCTTGTCCCCGGTCATTAACATGAGCCCCGTTTCCTCCCTCCCCCTTCGGGGGAGGGGGTCGGGGTGAggg                                     <  2:3420005/76‑1 (MQ=255)
                                   cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAggg                                     >  1:291588/1‑76 (MQ=38)
                                    tAAGCCGTGTACCCTGTCATTGACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGt                                    <  2:1863358/76‑1 (MQ=25)
                                    tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAgggg                                    >  2:4949445/1‑75 (MQ=37)
                                    tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGt                                    >  1:96984/1‑76 (MQ=38)
                                    tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGt                                    >  2:380059/1‑76 (MQ=37)
                                     aaGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTa                                   >  1:4586931/1‑76 (MQ=37)
                                      aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTaa                                  >  2:285630/1‑76 (MQ=37)
                                        ccGTGTACCCTGTCATTAACATGAGCACGGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtt                                <  1:1332737/76‑1 (MQ=25)
                                        ccGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtt                                >  1:1476050/1‑76 (MQ=37)
                                        ccGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtt                                >  2:3748032/1‑76 (MQ=37)
                                         cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAttt                               >  2:5780698/1‑76 (MQ=25)
                                         cGTGTAACCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAttt                               >  1:405174/1‑76 (MQ=25)
                                         cGTCTACGCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAttt                               <  1:93946/76‑1 (MQ=21)
                                          gtgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtttt                              >  1:5279145/1‑76 (MQ=37)
                                           tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAAtttgt                             >  2:3820931/1‑74 (MQ=25)
                                           tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGCGGTGAGGGTAAttttt                             >  1:94538/1‑76 (MQ=37)
                                            gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGGGGGGGCGGGGGGGGGGGTATTTTTTc                            >  1:1005182/1‑76 (MQ=16)
                                            gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTc                            >  1:5050606/1‑76 (MQ=37)
                                            gtACCCTGTCAGTAACATGAGCGCCGTTTTCTCCCTCTCCCTTCCAGGGAGCGGGGCGGGGTGAGGGTAATTTTTc                            <  1:5393306/76‑1 (MQ=21)
                                             gaCCCTTTCCTTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCg                           <  2:148381/75‑1 (MQ=21)
                                              aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGc                          <  2:4239152/76‑1 (MQ=37)
                                               cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGGGAGGGCAATTTTTCGcc                         >  2:649309/1‑75 (MQ=37)
                                                ccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAc                        <  1:2679689/76‑1 (MQ=37)
                                                ccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAc                        <  2:4586930/76‑1 (MQ=37)
                                                  tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCg                      >  2:1563020/1‑76 (MQ=25)
                                                   gTCATTAGCAGGAGCGCGTTTTTCTCCCTCTCCCGGCGGGGGAGGGGGTGGGGGTGAGGGTAATTTTTCGCACCGa                     <  2:1979482/76‑1 (MQ=255)
                                                   gTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGa                     >  1:4070455/1‑76 (MQ=37)
                                                   gTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGa                     <  1:3859871/76‑1 (MQ=37)
                                                    tCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt                    <  2:3896315/76‑1 (MQ=25)
                                                    tCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt                    <  1:891445/76‑1 (MQ=37)
                                                       ttAACATGAGCGCCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt                 <  2:4638529/76‑1 (MQ=25)
                                                       ttAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt                 <  2:4591298/76‑1 (MQ=37)
                                                        tAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg                >  1:4433836/1‑76 (MQ=37)
                                                        tAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg                >  2:4774780/1‑76 (MQ=25)
                                                         aaCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGCTGCTgg               >  2:5655137/1‑76 (MQ=25)
                                                           cATGAGCACCTTTTCCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGcc             <  2:2585605/76‑1 (MQ=25)
                                                           cATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGcc             <  1:1683232/76‑1 (MQ=37)
                                                           cATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAACGATGCTGGcc             >  1:107211/1‑76 (MQ=25)
                                                              gAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGt          <  2:291588/76‑1 (MQ=37)
                                                                  aCCGTTTTCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTccc      >  2:887574/1‑76 (MQ=25)
                                                                      ttttCTCCCTCTCCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCa  <  2:5508773/76‑1 (MQ=21)
                                                                            |                                                                      
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCTCTCCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCA  >  NC_000913/3237165‑3237308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: