| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,237,247 | +C | intergenic (+60/‑337) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,237,245 | 1 | . | C | 99.0% | 274.9 / ‑4.2 | 103 | intergenic (+58/‑339) | ygjT/ygjU | putative transport protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (54/48); total (54/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 120 total aligned reads displayed.
CAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAC > NC_000913/3237173‑3237315 | cagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑cc < 1:2793553/76‑1 (MQ=255) agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑ccc < 2:2412133/76‑2 (MQ=255) agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑ccc < 1:537691/76‑2 (MQ=255) agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑ccc > 1:3219633/1‑75 (MQ=255) cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑ccctt < 2:2470364/76‑4 (MQ=255) ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCTCCGTTTTCTCCCTCTCCCTTCCa < 1:3407960/76‑1 (MQ=255) ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCa > 1:238219/1‑76 (MQ=255) ggTGGATAATTTTTAATCCGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCa < 1:3165344/76‑1 (MQ=255) gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑g < 2:1580608/76‑1 (MQ=255) tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑gg < 2:3592774/76‑1 (MQ=255) tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑gg > 2:1615877/1‑76 (MQ=255) ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑ggg > 1:4584162/1‑76 (MQ=255) ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑ggg > 1:3369466/1‑76 (MQ=255) ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑ggg > 2:4482060/1‑76 (MQ=255) ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑ggg > 2:3299158/1‑76 (MQ=255) gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGga > 2:406015/1‑76 (MQ=255) aTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccctct‑cc < 2:2569904/65‑1 (MQ=255) tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGgaga < 1:4557008/76‑1 (MQ=255) aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGagag < 1:4627068/76‑1 (MQ=255) aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGagag < 1:4920755/76‑1 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGagagt < 1:1598257/76‑2 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAgg < 2:3221219/76‑1 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAgg > 1:319399/1‑76 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAgg < 1:1470788/76‑1 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAgg < 1:2124652/76‑1 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGGCACTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAgg > 2:393851/1‑76 (MQ=255) tgtttAATCTGCCTCAGCCGTGTGCCCGGTCATTAACATGAGCGCCTTCTTCTCCCTCTCCCTTCCA‑GGGAGAggg < 2:155397/74‑1 (MQ=255) ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGt < 1:3436644/76‑1 (MQ=255) ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGCTTTATCCCTCTCCCTTCCA‑CAGAGAGGGt > 1:2653529/1‑76 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTc < 2:3571411/76‑1 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTc < 1:3373337/76‑1 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACACGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTc < 2:5188254/76‑1 (MQ=255) ttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGCCg > 2:134405/1‑76 (MQ=38) tAATCTGCCTAAGCCGTGTCCCCTGTCCTTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGTAGCGGGTCgg > 1:3310159/1‑76 (MQ=255) tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCgg < 1:1824726/76‑1 (MQ=255) aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCggg > 2:1931416/1‑76 (MQ=255) aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCggg < 2:3754070/76‑1 (MQ=255) aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCggg > 2:4411764/1‑76 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCgggg > 2:560003/1‑76 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCgggg < 1:3072099/76‑1 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGt < 2:2965943/76‑1 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGt < 2:3879911/76‑1 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGt < 1:5652134/76‑1 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGt > 1:2822798/1‑76 (MQ=255) cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCC‑CGGCGAGGGCCcggggg > 2:244278/1‑74 (MQ=255) cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGCCGGGGTg > 2:720258/1‑76 (MQ=25) gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAg < 1:519968/76‑1 (MQ=38) gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGGGAg > 2:4420495/1‑76 (MQ=38) ccTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAgg > 2:3161527/1‑76 (MQ=38) ccTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAgg > 2:2168850/1‑76 (MQ=38) cTAAGCCTTGTCCCCGGTCATTAACATGAGCCCCGTTTCCTCCCTCCCCCTTCGG‑GGGAGGGGGTCGGGGTGAggg < 2:3420005/76‑1 (MQ=255) tAAGCCGTGTACCCTGTCATTGACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGt < 2:1863358/76‑1 (MQ=25) tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAgggg > 2:4949445/1‑75 (MQ=37) tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGt > 2:380059/1‑76 (MQ=37) tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGt > 1:96984/1‑76 (MQ=38) aaGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTa > 1:4586931/1‑76 (MQ=37) aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTaa > 2:285630/1‑76 (MQ=37) ccGTGTACCCTGTCATTAACATGAGCACGGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtt < 1:1332737/76‑1 (MQ=25) ccGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtt > 1:1476050/1‑76 (MQ=37) ccGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtt > 2:3748032/1‑76 (MQ=37) cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttt > 1:2598187/1‑76 (MQ=37) cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttt > 2:5780698/1‑76 (MQ=25) cGTGTAACCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttt > 1:405174/1‑76 (MQ=25) cGTCTACGCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttt < 1:93946/76‑1 (MQ=21) gtgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtttt > 1:655807/1‑76 (MQ=37) gtgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtttt > 1:5279145/1‑76 (MQ=37) tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtttgt > 2:3820931/1‑74 (MQ=25) tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGCGGTGAGGGTAAttttt > 1:94538/1‑76 (MQ=37) gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGGGGGGGCGGGGGGGGGGGTATTTTTTc > 1:1005182/1‑76 (MQ=16) gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTc > 1:5050606/1‑76 (MQ=37) gtACCCTGTCAGTAACATGAGCGCCGTTTTCTCCCTCTCCCTTCCA‑GGGAGCGGGGCGGGGTGAGGGTAATTTTTc < 1:5393306/76‑1 (MQ=21) gaCCCTTTCCTTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCg < 2:148381/75‑1 (MQ=21) aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGc < 2:4239152/76‑1 (MQ=37) cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCa > 2:627684/1‑76 (MQ=25) cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGGGAGGGCAATTTTTCGcc > 2:649309/1‑75 (MQ=37) ccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAc < 2:4586930/76‑1 (MQ=37) ccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAc < 1:2679689/76‑1 (MQ=37) tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCg > 2:1563020/1‑76 (MQ=25) gTCATTAGCAGGAGCGCGTTTTTCTCCCTCT‑CCCGGCGGGGGAGGGGGTGGGGGTGAGGGTAATTTTTCGCACCGa < 2:1979482/76‑1 (MQ=255) gTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGa > 1:4070455/1‑76 (MQ=37) tCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 1:891445/76‑1 (MQ=37) ttAACATGAGCGCCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt < 2:4638529/76‑1 (MQ=25) ttAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt < 2:4591298/76‑1 (MQ=37) tAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg > 1:4433836/1‑76 (MQ=37) tAACATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg > 2:4774780/1‑76 (MQ=25) aaCATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGCTGCTgg > 2:5655137/1‑76 (MQ=25) cATGAGCACCTTTTCCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGcc < 2:2585605/76‑1 (MQ=25) cATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGcc < 1:1683232/76‑1 (MQ=37) cATGAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAACGATGCTGGcc > 1:107211/1‑76 (MQ=25) gAGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGt < 2:291588/76‑1 (MQ=37) aGCACCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGtt < 2:4288690/76‑1 (MQ=25) aCCGTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTccc > 2:887574/1‑76 (MQ=25) gTTTTCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTc > 2:4759917/1‑76 (MQ=25) ttttCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCa < 2:5508773/76‑1 (MQ=21) ttttCTCCCTCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCa > 1:3871058/1‑76 (MQ=21) ctccctctcccTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCt > 2:3570786/4‑76 (MQ=25) tccctctcccTTCCA‑GGGAGAGGGCCGGGGTGAGGGTAATTTTTCGCACCGCTGCTGGCCTGTTCCCCTCCCCCTa > 2:580536/3‑76 (MQ=17) ccctctcccTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTaa > 1:3123956/2‑76 (MQ=255) cctctcccTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGCTCCCCTCACCCTAAc > 2:5074992/1‑76 (MQ=25) cctctcccTTCCA‑GGGAGAGGGTCGGGGTCAGGGTAATTTTTCGCACCGATGCTGGCCTGCTCCCCCCACCCCAAc > 2:729690/1‑76 (MQ=21) | CAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAC > NC_000913/3237173‑3237315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |