| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,430,453 | +C | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,430,453 | 1 | . | C | 98.2% | 295.5 / ‑1.0 | 108 | coding (745/747 nt) | smf | putative Rossmann‑fold nucleotide‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (61/45); total (62/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 116 total aligned reads displayed.
GTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTC > NC_000913/3430378‑3430522 | gTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑g > 1:5283571/1‑76 (MQ=255)gTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑g < 1:3994824/76‑1 (MQ=255)gTCACAAGAATAGCTCCTTGTTTTATTAACCAGTGAGGGCCTTCGCTTCGCGGATTCCCTATTGGACCTGGCAAg‑g < 2:2103329/76‑1 (MQ=255) tCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gc > 2:4281977/1‑75 (MQ=255) tCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCGATTGGACCTGGCAAg‑gc > 2:681476/1‑75 (MQ=255) cacaAGAATCGCGCCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAg‑gca < 2:2278585/76‑3 (MQ=255) caAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑caaa > 2:1210039/1‑76 (MQ=255) aaGAATCGCACCTTGTTTTAGTAACCAGTGAGGCCCTTCGCTTCCCGGATTACCTATTGGACCCGGCAAT‑G‑caaaa > 2:517608/1‑76 (MQ=255) gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAAc > 2:4514614/1‑76 (MQ=255) gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAAc < 1:3889106/76‑1 (MQ=255) aaTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACt < 2:917543/76‑1 (MQ=255) aaTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACt > 2:4236772/1‑76 (MQ=255) aTCGCACCTTGTTTTATTAACCATTGAGGCCCTTCGCTTCGCTGATTCCCTATTGGAGCTGGCAAG‑G‑CAACACttt < 1:4729393/76‑2 (MQ=255) aTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACtt < 2:3456204/76‑1 (MQ=255) cGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtct < 1:425952/76‑1 (MQ=255) gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtctc > 1:3856346/1‑76 (MQ=255) gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtctc < 2:560946/76‑1 (MQ=255) gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTtctc > 1:3256546/1‑76 (MQ=255) cgccTTGTTTTATTAGCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGATCTGGCAAG‑GCAAATACTTCTCg < 2:3649188/74‑1 (MQ=255) cACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCg > 1:3766467/1‑76 (MQ=255) cccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGc < 2:908286/75‑1 (MQ=255) aCCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGc < 2:5091390/76‑1 (MQ=255) ccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGcc < 2:1052032/76‑1 (MQ=255) ccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGcc < 1:2730185/76‑1 (MQ=255) tGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAACCTTCTCGCCCCt < 1:1269183/76‑1 (MQ=255) tGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCt < 2:2973616/76‑1 (MQ=255) gTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTg < 2:5647958/76‑1 (MQ=255) gTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTg < 2:2709633/76‑1 (MQ=255) ttttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCCGc > 2:5215622/1‑76 (MQ=255) tttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCt > 2:5396549/1‑76 (MQ=255) ttattaACCAGTGAGGCCCTTCTCTTCACGGATTCCCTCTTGGACCCGGCAAGCC‑CCACCCTTCTCGCCCCTGcac > 2:1242195/1‑74 (MQ=255) ttattaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTc > 2:1230767/1‑76 (MQ=255) tattaACCAGTGAGGCCCTTCGCTTCCAGGCTTCCATATTGGACCTGGTAAG‑GCAAAAACGTCTCGCACCAGCtaa > 1:2883873/1‑74 (MQ=255) attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAACAACTTCTCGCCCCTGCTcca > 2:5317414/1‑74 (MQ=255) attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCaa < 2:2175693/76‑1 (MQ=255) attaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCaa > 2:4266701/1‑76 (MQ=255) taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCACgc > 2:3031537/1‑76 (MQ=255) taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAgc < 1:5463557/76‑1 (MQ=255) taACCAGTGAGGCCCTTCGCGTCACGGATTCCCTATGGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCGGCTCAAgc < 2:4524192/76‑1 (MQ=255) aaCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAgcg > 2:4078843/1‑76 (MQ=255) aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCACgcgc > 2:2216896/1‑76 (MQ=255) aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGATCAAgcgc > 1:853319/1‑76 (MQ=255) ccAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGca > 2:2020636/1‑76 (MQ=255) ccAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGca < 2:2347321/76‑1 (MQ=255) aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGcaca > 2:2142279/1‑76 (MQ=255) aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGcaca > 1:2758582/1‑76 (MQ=255) tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCTCCCTCGCTCAAGCGCACAAc > 2:1823785/1‑76 (MQ=255) tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAc < 1:2319114/76‑1 (MQ=255) tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAc > 2:2400059/1‑76 (MQ=255) gAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACg < 1:4578239/76‑1 (MQ=255) gAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACg > 1:3165291/1‑76 (MQ=255) gAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACg < 1:2598797/76‑1 (MQ=255) aGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGt > 1:551265/1‑76 (MQ=255) cccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCt > 1:5726328/1‑76 (MQ=255) cccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGAGCACAACGTGCt > 2:4288242/1‑76 (MQ=255) ccTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTAGCCCCTGCTCAAGCGCACAACGTGCTg < 1:3079490/76‑1 (MQ=255) cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGc < 2:4458867/73‑1 (MQ=255) cTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGc > 1:4458868/1‑73 (MQ=255) ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTc < 1:846505/76‑1 (MQ=255) ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGCGCTGTc > 2:1481093/1‑76 (MQ=255) ttCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACCTGCTGTc > 2:5516756/1‑76 (MQ=255) cGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAc > 2:799640/1‑76 (MQ=255) cGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAc < 1:5278545/76‑1 (MQ=255) gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 1:122438/1‑76 (MQ=255) gCTTCCCGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 1:3900509/1‑76 (MQ=255) ttCCCGGCTTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAg > 2:1656076/1‑76 (MQ=255) ttCCCGGATTCCCTCTTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAg > 2:3940469/1‑76 (MQ=255) cGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGac > 2:793575/1‑75 (MQ=255) cGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGaa > 1:4341746/1‑76 (MQ=255) cGGATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGaa > 1:2183957/1‑76 (MQ=255) ggATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa > 1:5225836/1‑70 (MQ=255) ggATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa < 2:5225835/70‑1 (MQ=255) ggATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAAc < 2:3091157/76‑1 (MQ=255) gATTCCCTATTGGACCTGGCAAG‑GCAAGAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAGcc < 2:360912/76‑1 (MQ=255) gATTCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAAcc > 1:2810762/1‑76 (MQ=255) tCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCAcc > 2:687624/1‑75 (MQ=255) tCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACt < 1:1757330/76‑1 (MQ=255) tCCCTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACt > 2:4444494/1‑76 (MQ=255) cccTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTa > 1:1171006/1‑76 (MQ=255) ccTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc > 1:4226244/1‑76 (MQ=255) cTATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACg < 1:4569290/76‑1 (MQ=255) tATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCACGCGCACAACGTGCTGTCACCAGCGAACCACTACGc > 2:5299861/1‑76 (MQ=255) tATTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAccc > 2:386862/1‑74 (MQ=255) cttGGACCAGGCAAG‑TCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCa < 1:1210039/75‑1 (MQ=255) aTTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCa > 1:4830113/1‑76 (MQ=255) aTTGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCa > 2:1894114/1‑76 (MQ=255) tGGACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaaa < 1:505750/76‑1 (MQ=255) ggACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAg > 1:3037120/1‑76 (MQ=255) ggACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAg > 1:1756509/1‑76 (MQ=255) ggACCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAg < 1:1238257/76‑1 (MQ=255) ggACCTGGCAAG‑GCAAAAACTTCTCGCCCATGCTCAAGCGCATAACGTGCTGACACCTGCGAACAACGACGTAAAg > 2:1823709/1‑76 (MQ=255) aCCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 1:4236773/76‑1 (MQ=255) aCCTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 1:4720668/76‑1 (MQ=255) ccTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCATCAGCGAAACACTCCGCAAAGCCg > 1:4695507/1‑76 (MQ=255) ccTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCg > 2:3494050/1‑76 (MQ=255) cTGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGc < 1:4651995/76‑1 (MQ=255) tGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGNGAACCACTACGCAAAGCCGCt < 1:4078844/76‑1 (MQ=255) tGGCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCt > 1:2233279/1‑76 (MQ=255) gCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTc > 2:3981241/1‑76 (MQ=255) gCAAG‑GCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTc > 2:3775286/1‑76 (MQ=255) | GTCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGGCAAG‑G‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTC > NC_000913/3430378‑3430522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |