| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244134 = | 181 (1.140) | 40 (0.260) +T |
11/148 | 11.3 | 18.3% | intergenic (+13/‑193) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| ? | NC_000913 | = 376715 | 180 (1.130) | intergenic (+180/+44) | yaiL/yaiM | nucleoprotein/polynucleotide‑associated enzyme/putative esterase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 422 total aligned reads displayed.
GAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCC > NC_000913/244059‑244209 | agaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGcc > 1:1025473/1‑76 (MQ=255) agaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCT‑GCGGAGGCCg > 2:781661/1‑76 (MQ=255) gaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCg > 1:1315465/1‑76 (MQ=255) aTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCgg < 2:5114014/76‑1 (MQ=255) aTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCgg < 2:3816965/76‑1 (MQ=255) ttCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGa < 1:2941851/76‑1 (MQ=255) tCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGAt < 1:500949/76‑1 (MQ=255) tCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGAt > 1:4911130/1‑76 (MQ=255) cacaTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATa > 1:3941145/1‑76 (MQ=255) caTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAg < 2:4777936/76‑1 (MQ=255) tAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTATGGCGTAGGCCGGATAAGACg > 1:5662190/1‑76 (MQ=255) aaaGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt < 1:5058547/76‑1 (MQ=255) aGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGttt < 2:320702/76‑1 (MQ=255) aGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGctt > 2:1115755/1‑76 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAc > 2:1949349/1‑76 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAc < 2:1529706/76‑1 (MQ=255) gATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcg > 1:3775039/1‑76 (MQ=255) tCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgcc > 1:4221615/1‑76 (MQ=255) cATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgccgc < 2:2966121/76‑1 (MQ=255) atCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATc > 1:916064/1‑76 (MQ=255) cTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCgg < 1:231681/76‑1 (MQ=255) gATCCAGTTGATTGAACAAGAGATGGTTCAGTAAGTCTGGCGTATGCCGGATAAGCCGTTTCCGCCGCATCCgtga > 1:115229/1‑73 (MQ=25) ccAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAttt > 2:3110237/1‑76 (MQ=255) atgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCAttt > 2:3048499‑M1/39‑76 (MQ=255) gcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtgt < 1:5584489‑M1/40‑1 (MQ=255) aGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCCGCATTtgg > 2:1777678/1‑75 (MQ=255) cgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtgtg < 2:2401469‑M1/41‑1 (MQ=255) ttgattgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc < 2:4594907/76‑1 (MQ=255) ttgattgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc > 2:2145450/1‑76 (MQ=255) gcgtcttgtcaggtctacggtttatgggcgaagtGTAGGCCGGATAGGCCGTTTACGCCGCATCGGGCATTTGTgc > 1:2587534‑M1/35‑76 (MQ=255) gcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc < 1:1785966‑M1/42‑1 (MQ=255) cgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg < 1:4116677‑M1/43‑1 (MQ=255) cgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg > 2:2613907‑M1/34‑76 (MQ=255) gtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcgc < 1:4590146‑M1/44‑1 (MQ=255) gtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcgc > 2:4715838‑M1/33‑76 (MQ=255) gtcgtatcaggcctgcggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATGCGGCATTTGtgcgt > 2:2043587‑M1/33‑75 (MQ=255) tcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCCGCATTTGtgcgcg < 2:1313756‑M1/45‑2 (MQ=255) attgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGct > 1:4832966/1‑76 (MQ=255) ttgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctg > 2:535522/1‑76 (MQ=255) cttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctg > 1:1413066‑M1/31‑76 (MQ=255) cttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctg < 1:2004728‑M1/46‑1 (MQ=255) cttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGCTTACGCCGCATCCGGCATTTGTGCGctg < 2:3444543‑M1/46‑1 (MQ=255) ttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctga < 1:5483971‑M1/47‑1 (MQ=255) ttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctga > 2:2203579‑M1/30‑76 (MQ=255) ttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctga > 1:4506342‑M1/30‑76 (MQ=255) gaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat > 2:736674/1‑76 (MQ=255) aaaaaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatg < 1:3880464/76‑1 (MQ=255) tcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgc < 2:3585749‑M1/50‑1 (MQ=255) aggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct > 2:3755237‑M1/25‑76 (MQ=255) aggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct > 2:3558364‑M1/25‑76 (MQ=255) aggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct > 1:5234861‑M1/25‑76 (MQ=255) aggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct > 1:5180846‑M1/25‑76 (MQ=255) ggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctg > 2:2733854‑M1/24‑76 (MQ=255) gaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg < 1:3308005/76‑1 (MQ=255) gaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg > 1:3379482/1‑76 (MQ=255) ctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg > 2:4238367‑M1/21‑76 (MQ=255) ctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg > 1:699864‑M1/21‑76 (MQ=255) tgcggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc > 2:889972‑M1/20‑76 (MQ=255) tacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc > 1:5798697‑M1/20‑76 (MQ=255) gggggttgtgggcgaaggGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCg > 2:5804037‑M1/19‑76 (MQ=255) gcggtttatgggggaagtGTGGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCg > 2:5637335‑M1/19‑76 (MQ=255) cggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 1:1103972‑M1/18‑76 (MQ=255) cggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 2:4477706‑M1/18‑76 (MQ=255) cggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 1:3462139‑M1/18‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCTCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 1:436522‑M1/17‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 2:2859987‑M1/17‑76 (MQ=255) gTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc < 2:4922183/76‑1 (MQ=255) tttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGc < 1:1572878‑M1/62‑1 (MQ=255) ttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt < 2:2365261‑M1/63‑1 (MQ=255) ttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt < 1:983016‑M1/63‑1 (MQ=255) ttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt > 1:1623506‑M1/14‑76 (MQ=255) aagtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt < 2:5009359/76‑1 (MQ=255) tatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg < 2:3982902‑M1/64‑1 (MQ=255) tatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg > 2:4313812‑M1/13‑76 (MQ=255) tatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg < 2:3405416‑M1/64‑1 (MQ=255) agtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg < 1:3065784/76‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa < 1:1522548‑M1/65‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGACGCCTGATGCGACGCTGa < 2:4374170‑M1/65‑1 (MQ=255) tgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAc < 1:3237579‑M1/66‑1 (MQ=255) aagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg > 2:185530/1‑76 (MQ=255) ggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc > 2:2236562‑M1/9‑76 (MQ=255) ggcgaagtCTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGTGCTGATGCCTGATGCGACGCTGAcgc > 1:1189311‑M1/9‑76 (MQ=255) gtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg > 1:5399070/1‑76 (MQ=255) gcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg > 2:1636092‑M1/8‑76 (MQ=255) gcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 1:844123‑M1/69‑1 (MQ=255) tCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGt > 1:802119/1‑76 (MQ=255) aagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGCCCCtgacgcgcct < 2:5825973‑M1/72‑4 (MQ=255) tGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTAt < 1:4736797‑M1/75‑1 (MQ=255) gTAGTCCGGATAGGACGGTTACGCCGCATCCGGCCTTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc < 2:5514505/76‑1 (MQ=17) gTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc < 1:3684467/76‑1 (MQ=255) tAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCa > 2:1376583/1‑76 (MQ=255) tAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCa < 1:2764261/76‑1 (MQ=255) agaccGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCAt < 1:312716/73‑1 (MQ=255) gaccGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATg < 1:2181743/74‑1 (MQ=255) gaccGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATg > 2:248598/3‑76 (MQ=255) gaccGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATg > 2:677266/3‑76 (MQ=255) gCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGc < 1:5296591/76‑1 (MQ=255) gCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGc > 2:5145772/1‑76 (MQ=255) accGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGc > 1:2444099/2‑76 (MQ=255) ccGGATAAGTCGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGcc < 2:326971/76‑1 (MQ=255) | GAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATCATGCC > NC_000913/244059‑244209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |