| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207013 = | 39 (0.250) | 86 (0.690) | 64/118 | 0.5 | 74.9% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 27 (0.220) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
Only 100 of 145 total aligned reads displayed.
AGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATT > NC_000913/1208767‑1208916 | ccggtatagctgtgaagccggtgcgtccttatgtggccgttgctgcattgagttttgctccttctcccaaaccaac < 2:5745421‑M2/1‑1 (MQ=255) ggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt > 1:5346878‑M2/74‑76 (MQ=255) gtgtagctagtaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGtt < 2:3397179‑M2/4‑1 (MQ=255) gtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGtt > 2:2353537‑M2/73‑76 (MQ=255) cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGtt < 2:2998098/76‑1 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt < 1:1801314‑M2/5‑1 (MQ=255) gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa > 1:3895892/1‑76 (MQ=255) atagctatgaacccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa < 1:210602‑M2/6‑1 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa > 2:3306988‑M2/71‑76 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa < 1:5135616‑M2/6‑1 (MQ=255) tagctatgaacccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 2:1663196‑M2/7‑1 (MQ=255) tagctatgaaacaggggcgtcctaatgtagcagttgctgcagtgagttttgctccttctcccaaaccaaCGTTTAt > 2:1383847‑M2/70‑76 (MQ=255) agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg > 2:688418‑M2/69‑76 (MQ=255) agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg < 1:2190359‑M2/8‑1 (MQ=255) agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg < 1:876075‑M2/8‑1 (MQ=255) tctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa < 2:5374576‑M2/9‑1 (MQ=255) gctatgaaaccggtgcgtcctaatgtagcccttgctgcattgagctttgctccttctcccaaaccaaCGTTTATGa > 2:5327478‑M2/68‑76 (MQ=255) gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa < 1:1284480/76‑1 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa > 1:2371918‑M2/67‑76 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa > 1:4547367‑M2/66‑76 (MQ=255) ccgAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTGAGGCAGAGCCTTCTCCCAAACCAACGATTATGaaa > 2:2379587/3‑76 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa < 2:1433511/76‑1 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTATGaaaa > 2:1335254/1‑76 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa > 1:5641756‑M2/65‑76 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa > 1:2923250‑M2/65‑76 (MQ=255) tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt > 2:4466288‑M2/64‑76 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 1:5228842‑M2/62‑76 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 2:5675078‑M2/62‑76 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 1:1021622‑M2/62‑76 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 2:2842177/1‑76 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa > 1:4719415‑M2/61‑76 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa < 2:1348810‑M2/16‑1 (MQ=255) ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag < 2:5136700/76‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag < 2:5466849‑M2/17‑1 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag > 2:2623038‑M2/60‑76 (MQ=255) ccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga < 1:3059832‑M2/18‑1 (MQ=255) ccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga > 2:1702321‑M2/59‑76 (MQ=255) cggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaagaa < 1:4844763‑M2/19‑1 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGCTTATGAAAATGAAGaaa > 1:1253202‑M2/57‑76 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt > 1:2338080‑M2/56‑76 (MQ=255) gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt > 2:3061200/1‑76 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa > 2:1166710‑M2/55‑76 (MQ=255) gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 1:948423‑M2/52‑76 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg < 1:2373547‑M2/27‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc > 1:880494‑M2/49‑76 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc < 2:4547366‑M2/28‑1 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc < 2:3590730/76‑1 (MQ=255) atgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa < 1:4616873‑M2/31‑1 (MQ=255) aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGTTTATGCCACTGAAGACATCACCAGCCAAt > 2:4465537/1‑76 (MQ=255) aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAt > 2:4414845/1‑76 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccagCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:5215521‑M2/33‑1 (MQ=255) agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 2:847507‑M2/35‑1 (MQ=255) agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc > 1:3327325‑M2/42‑76 (MQ=255) tacgttgctgcattgagttttgctccttctccgaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 1:41880‑M2/36‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 1:3924537‑M2/36‑1 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 2:4653366‑M2/37‑1 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc < 1:3783210‑M2/38‑1 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:5368826‑M2/37‑76 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 2:895786‑M2/40‑1 (MQ=255) ttgctgcattgagtcttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:1528886‑M2/37‑76 (MQ=255) cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 2:4769955/1‑76 (MQ=255) tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:278892‑M2/36‑76 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc < 2:4250348/76‑1 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 1:5746136‑M2/44‑1 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 1:4489855/76‑1 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg > 1:4758339‑M2/32‑76 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATTCCTg > 1:2493490‑M2/32‑76 (MQ=255) gcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATTCCTg > 1:2434985‑M2/32‑76 (MQ=255) cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc > 1:3068024‑M2/31‑76 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:5472131‑M2/47‑1 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt < 2:3624931/76‑1 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:608677‑M2/49‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt < 2:4968470/76‑1 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 2:2739092‑M2/26‑76 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa > 1:540814‑M2/26‑76 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCCTTTAcc < 1:2019728/76‑1 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCGTTCCTGCTTTTACCAgg < 1:2723570‑M2/56‑1 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg > 1:5201697‑M2/21‑76 (MQ=255) gctccttctcccacaccaaCGTTTATGAAAATGACGACATCACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 1:4573749‑M2/57‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 2:5393747‑M2/58‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa > 1:2477822‑M2/17‑76 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 2:5656288‑M2/60‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:2524925‑M2/60‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 2:4592031‑M2/60‑1 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTA‑CAGGGGGAt < 2:2856446‑M2/60‑1 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt < 1:2869495‑M2/62‑1 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:1083186‑M2/63‑1 (MQ=255) cgcccAAAGCGACGTTTATGAAAATGAAGTAAGAACAAGCAAATGGCATCTGTCCGGCTGTTACCAGGGGGATTTa > 1:1057067/3‑76 (MQ=255) tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTaa > 2:4771281‑M2/12‑76 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa < 2:4511530‑M2/64‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa < 2:3815159‑M2/64‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATGCCTGCTTTTACCAGGGGGATTTAAc > 2:1646120‑M2/11‑76 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa > 1:3585108‑M2/10‑76 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGGGGATTTAACAt < 1:1449550‑M2/68‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt > 1:4461622‑M2/9‑76 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:260797‑M2/68‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt > 1:646939‑M2/9‑76 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt > 1:3122924‑M2/5‑76 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt > 1:5073842‑M2/3‑76 (MQ=255) aCGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 2:2970419‑M2/75‑1 (MQ=255) | AGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATT > NC_000913/1208767‑1208916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |