Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1294640	1297386	2747	62 [60]	[61] 62	adhE	adhE

CATAATGCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCGCGCTCAC  >  NC_000913/1297342‑1297462                                              |                                                                            cacaaTGCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGtg                                               <  2:1609865/73‑1 (MQ=255) cacaaTGCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGtg                                               <  1:4339766/73‑1 (MQ=255)     aTGCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGtgatga                                           <  1:1643295/76‑1 (MQ=255)      tGCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTgatgat                                          <  1:5344797/76‑1 (MQ=255)       gCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGAtt                                         >  2:1349091/1‑76 (MQ=255)       gCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGAtt                                         >  1:2864223/1‑76 (MQ=255)        ctctCCTGATAATGTTCAGCTTTTTTAGTAAATCATCTGCTCGAATCCGCGAGTCTCGTCAGTGCTTTGATGAttt                                        <  2:1790208/76‑1 (MQ=255)         tctcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTg                                       <  2:5486123/76‑1 (MQ=255)         tctcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTg                                       >  2:2617046/1‑76 (MQ=255)         tctcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTg                                       <  2:1921499/76‑1 (MQ=255)          ctcCTGATAATGTTACACTTTTTTAGTAACTCATCTGCTCGCCTACGCGAGTATCGTCAGTGCGGTGATTATTTGc                                      >  2:4873263/1‑76 (MQ=255)          ctcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGc                                      >  2:4840210/1‑76 (MQ=255)           tcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCt                                     <  1:5750380/76‑1 (MQ=255)           tcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCt                                     >  2:721116/1‑76 (MQ=255)           tcCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCt                                     >  1:2999019/1‑76 (MQ=255)            ccTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCtt                                    >  1:5678752/1‑76 (MQ=255)              tGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTaa                                  >  2:4440293/1‑76 (MQ=255)              tGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTaa                                  >  1:2578719/1‑76 (MQ=255)               gATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAAc                                 >  2:4644931/1‑76 (MQ=255)                aTAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAAcc                                >  2:3225240/1‑76 (MQ=255)                aTAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAAcc                                >  1:5652687/1‑76 (MQ=255)                 tAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCt                               >  1:4437195/1‑76 (MQ=255)                  aaTGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTa                              <  1:563063/76‑1 (MQ=255)                  aaTGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTa                              <  2:1707406/76‑1 (MQ=255)                  aaTGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTa                              >  2:1259012/1‑76 (MQ=255)                  aaTGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTa                              <  1:3225240/76‑1 (MQ=255)                  aaTGTGAAACTTTTGGAGTAAATCAGCGGCGCGAATACGAGAGTATAGACAGAGCGGTGATGATTTGATTAACATa                              >  1:1382090/1‑76 (MQ=255)                   aTGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTAt                             <  2:4840554/76‑1 (MQ=255)                       tAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGaaa                         >  1:5133651/1‑76 (MQ=255)                       tAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGaaa                         <  2:613336/76‑1 (MQ=255)                        aaaCTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGaaaa                        >  1:3844416/1‑76 (MQ=255)                        aaaCTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGaaaa                        >  1:5405668/1‑76 (MQ=255)                         aaCTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAAt                       >  1:1087366/1‑76 (MQ=255)                          aCTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATGTGCTTAACCTATGAAAATc                      >  1:2933756/1‑76 (MQ=255)                           cTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCa                     >  1:2661170/1‑76 (MQ=255)                           cTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCa                     >  1:1589815/1‑76 (MQ=255)                            ttttttAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCaa                    >  1:151625/1‑76 (MQ=255)                              ttttAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCaaaa                  <  2:4544799/76‑1 (MQ=255)                              ttttAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCaaaa                  >  2:2673131/1‑76 (MQ=255)                               tttAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAg                 <  1:5269029/76‑1 (MQ=255)                               tttAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAg                 <  1:3123435/76‑1 (MQ=255)                                 tAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCt               <  1:1259012/76‑1 (MQ=255)                                 tAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCt               >  2:2452599/1‑76 (MQ=255)                                   gTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTa             >  1:129861/1‑76 (MQ=255)                                    tAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTAc            <  1:3147744/76‑1 (MQ=255)                                    tAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTAc            <  1:3772974/76‑1 (MQ=255)                                    tAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTAc            <  1:4758414/76‑1 (MQ=255)                                    gaaaTCAGCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATGTGCTTCACCTATGAAAATCAAAAGCGTAc            >  2:3134496/2‑76 (MQ=255)                                     aaaTCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCCTACt           >  2:5583591/1‑76 (MQ=255)                                      aaTCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTc          <  2:4053384/76‑1 (MQ=255)                                       atcatcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTcg         <  1:1349091/76‑1 (MQ=255)                                       atcatcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTcg         <  2:3662867/76‑1 (MQ=255)                                        tcatcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTcgc        >  2:3909568/1‑76 (MQ=255)                                        tcatcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTcgc        <  2:3767063/76‑1 (MQ=255)                                         catcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATCATTTGCCTAACCTATGAAAATCAAAAGCTTACTcgcc       >  2:5778676/1‑75 (MQ=255)                                          atcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCgcgc      >  1:1860580/1‑76 (MQ=255)                                          atcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCgcgc      >  2:5740590/1‑76 (MQ=255)                                          atcTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCgcgc      <  2:2868899/76‑1 (MQ=255)                                            cTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCGCGCTc    >  1:1655508/1‑76 (MQ=255)                                            cTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCGCGCTc    >  1:1295607/1‑76 (MQ=255)                                             tGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCGCGCTca   >  2:5136521/1‑76 (MQ=255)                                              gCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCGCGCTcac  >  2:4275991/1‑76 (MQ=255)                                              |                                                                            CATAATGCTCTCCTGATAATGTTAAACTTTTTTAGTAAATCATCTGCTCGAATACGAGAGTATAGTCAGTGCGGTGATGATTTGCTTAACCTATGAAAATCAAAAGCTTACTCGCGCTCAC  >  NC_000913/1297342‑1297462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑