BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,607,710	A→G	L332P (CTT→CCT)	uxaB ←	altronate oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,607,710	0	A	G	100.0%	338.0 / NA	123	L332P (CTT→CCT)	uxaB	altronate oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (63/60); total (63/60)

Only 100 of 123 total aligned reads displayed.

CAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAAGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTC  >  NC_000913/1607637‑1607781

cagcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGc                                                                       >  2:2092514/1‑76 (MQ=255)

 agcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCa                                                                      <  2:810976/76‑1 (MQ=255)

  gcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCaa                                                                     <  1:4160295/76‑1 (MQ=255)

  gcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCaa                                                                     <  2:5441119/76‑1 (MQ=255)

  gcTGATGCTTAATGTACGGGTTACGGAAACGCCCGGGGACTGCACTGGCGAAAGAATCCAGTTCATCACGAGGCaa                                                                     >  2:2664444/1‑76 (MQ=255)

     gATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATc                                                                  <  2:2332839/76‑1 (MQ=255)

      aTGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATcc                                                                 >  1:972997/1‑76 (MQ=255)

      aTGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATcc                                                                 <  2:2970568/76‑1 (MQ=255)

       tGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCa                                                                <  1:870283/76‑1 (MQ=255)

        gCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCTCGAGGCAAATCCAg                                                               <  2:4219942/76‑1 (MQ=255)

        gCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAg                                                               >  2:1007132/1‑76 (MQ=255)

        gCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAg                                                               <  2:2623875/76‑1 (MQ=255)

          ttAATGTACGGGTTACGGAAACGCCCGGTGACTGCGCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTa                                                             <  2:3017211/76‑1 (MQ=255)

          ttAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTa                                                             <  2:2244629/76‑1 (MQ=255)

           tAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAg                                                               >  2:458749/1‑73 (MQ=255)

           tAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAg                                                               <  1:458749/73‑1 (MQ=255)

           tAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTAc                                                            <  1:2505191/76‑1 (MQ=255)

           tAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTAc                                                            <  2:2434414/76‑1 (MQ=255)

             aTGTACGGGTTACGGAAACGTCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCg                                                          <  2:3377748/76‑1 (MQ=255)

              tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCgg                                                         <  1:1830865/76‑1 (MQ=255)

              tGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCgg                                                         <  1:1111423/76‑1 (MQ=255)

               gTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGCAAGCTTCCAGTTCATCACGAGGCACTTCCAGTACCGGa                                                        >  2:4988720/1‑76 (MQ=255)

               gTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAATTCCAGTACCGGa                                                        >  2:4964589/1‑76 (MQ=255)

               gTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGa                                                        <  2:3687290/76‑1 (MQ=255)

               gTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGa                                                        <  1:1706727/76‑1 (MQ=255)

                tACGGGTTACGGAAACGCCCGGTGACTGCCCTGGCGAAAGATTCCAGTTCATCACGAGGCTAATCCAGTACCGGaa                                                       >  2:3183005/1‑76 (MQ=255)

                tACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaa                                                       <  2:228375/76‑1 (MQ=255)

                  cGGGTTACGGAAACCCCCGGTGACTGCACTGGCGAAAGAGTCCAGTTCATCACGAGGCAAATCCAGTACCGGaata                                                     >  2:992779/1‑76 (MQ=255)

                   gggTTACGGAAACGCCCGGTGACTGCACTGGCGAAGGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataa                                                    <  2:4192204/76‑1 (MQ=255)

                    ggTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataat                                                   >  2:1304058/1‑76 (MQ=255)

                    ggTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGaataat                                                   <  1:4708005/76‑1 (MQ=255)

                     gTTACGGAAACGCCCGGTGAGTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAtt                                                  <  2:2497367/76‑1 (MQ=255)

                     gTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAAACCCCTACCGGACTAAtt                                                  >  2:948043/1‑76 (MQ=255)

                      ttACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAttt                                                 >  1:4501985/1‑76 (MQ=255)

                      ttACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAAttt                                                 <  1:5362224/76‑1 (MQ=255)

                        aCGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttct                                               <  1:3793854/76‑1 (MQ=255)

                        aCGGAAACGCCCAGTGACTGCACAGGCGAAAGATTCCAGGTCATCACGAGGCAAATCCAGTACCGGAAGAACttct                                               >  2:4810519/1‑76 (MQ=255)

                         cGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttctt                                              >  1:3595681/1‑76 (MQ=255)

                         cGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttctt                                              >  2:72888/1‑76 (MQ=255)

                          ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttcttc                                             <  1:902957/76‑1 (MQ=255)

                          ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttcttc                                             >  1:1308832/1‑76 (MQ=255)

                          ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttcttc                                             <  1:3546521/76‑1 (MQ=255)

                          ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttcttc                                             >  1:3142908/1‑76 (MQ=255)

                          ggAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATttcttc                                             >  2:2683557/1‑76 (MQ=255)

                           gAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCg                                            >  1:5459938/1‑76 (MQ=255)

                            aaaCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGt                                           <  2:3697488/76‑1 (MQ=255)

                            aaaCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGt                                           >  1:2579543/1‑76 (MQ=255)

                             agcGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTa                                          <  2:5062763/74‑1 (MQ=255)

                              aCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAg                                         >  1:564741/1‑76 (MQ=255)

                              aCGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCCTAg                                         >  2:27763/1‑76 (MQ=255)

                                gCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGAt                                       >  2:1439078/1‑76 (MQ=255)

                                 cccGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATa                                      <  1:5026318/76‑1 (MQ=255)

                                  ccGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATcc                                                                 <  1:3083288/48‑1 (MQ=255)

                                  ccGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATcc                                                                 >  2:3083288/1‑48 (MQ=255)

                                  ccGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAg                                     >  1:3880751/1‑76 (MQ=255)

                                  ccGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAg                                     >  1:4518654/1‑76 (MQ=255)

                                    ggTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCt                                   >  2:1947342/1‑76 (MQ=255)

                                     gTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCtt                                  <  2:1340339/76‑1 (MQ=255)

                                     gTGACTGCAATGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAAGAATTGCTGCGTAGATAGCtt                                  >  1:2632291/1‑76 (MQ=255)

                                      tGACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCttt                                 <  1:1803083/76‑1 (MQ=255)

                                       gACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCCGTACCGGAATAACTTCTTCGTAGATAGCttgt                                >  2:1068847/1‑74 (MQ=255)

                                       gACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCtttt                                <  1:386671/76‑1 (MQ=255)

                                       gACTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCtttt                                >  1:4656370/1‑76 (MQ=255)

                                        aCTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCttttt                               <  1:2092514/76‑1 (MQ=255)

                                        aCTGCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCttttt                               <  2:4155100/76‑1 (MQ=255)

                                         cTGCACTGGCGAAAGATTCCAGTTCATCACGCGGCAAATCCAGTACCGGAATACTTTCTTCGTAGATAGCTTTTTc                              >  2:5602727/1‑76 (MQ=255)

                                           gCACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCaa                            >  2:4695382/1‑76 (MQ=255)

                                           gCAATGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGGACCGGAATAATTTCTTCGTAGATAGCTTTTTCaa                            >  1:1188494/1‑76 (MQ=255)

                                            cACTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAAc                           <  1:1007132/76‑1 (MQ=255)

                                             aCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACg                          >  2:2554520/1‑76 (MQ=255)

                                             aCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACg                          >  2:4711946/1‑76 (MQ=255)

                                             aCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACg                          >  1:424855/1‑76 (MQ=255)

                                             aCTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACg                          <  2:3311982/76‑1 (MQ=255)

                                              cgggCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGa                         <  2:5691870/74‑1 (MQ=255)

                                              cTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGa                         <  1:4042019/76‑1 (MQ=255)

                                              cTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGa                         >  2:3254000/1‑76 (MQ=255)

                                              cTGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACAGGAATAAGTTCTTCGTAGATAGCTTTTTCAACGa                         >  1:3307400/1‑76 (MQ=255)

                                               tGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGaa                        <  1:2352726/76‑1 (MQ=255)

                                               tGGCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGaa                        <  1:5086820/76‑1 (MQ=255)

                                                 gCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATg                      >  1:3775657/1‑76 (MQ=255)

                                                  ggAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTGCTTCGTAGATAGCTTTTTCAACGAATgc                     <  2:5205309/75‑1 (MQ=255)

                                                  cGAAAGATTCCAGTTCGTCTCGAGGCCAATCCAGTGCCGGAGTAATTTCTACGTAGATAGCTTTTTCTACGAATgc                     <  1:3488450/76‑1 (MQ=255)

                                                  cGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATgc                     >  1:5786981/1‑76 (MQ=255)

                                                    aaaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGGTTTTTCAACGAATgcgc                   <  1:649870/76‑1 (MQ=255)

                                                     aaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCa                  <  2:4157729/76‑1 (MQ=255)

                                                     aaGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCa                  >  1:1254666/1‑76 (MQ=255)

                                                      aGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCaa                 <  1:4800629/76‑1 (MQ=255)

                                                       gATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCaaa                <  2:4469716/76‑1 (MQ=255)

                                                       gATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCaaa                >  2:378363/1‑76 (MQ=255)

                                                         ttCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAAtt              <  2:2799322/76‑1 (MQ=255)

                                                         ttCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAAtt              >  2:1851346/1‑76 (MQ=255)

                                                          tCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAAttt             >  1:4094497/1‑76 (MQ=255)

                                                             aGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAg          >  2:2988291/1‑76 (MQ=255)

                                                                tcatcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAt       <  2:5432260/76‑1 (MQ=255)

                                                                tcatcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCAt       >  1:2712389/1‑76 (MQ=255)

                                                                 catcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATc      <  1:2554520/76‑1 (MQ=255)

                                                                  atcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCg     >  2:1815455/1‑76 (MQ=255)

                                                                    caCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGtt   >  1:4801269/1‑76 (MQ=255)

                                                                     aCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTc  >  1:2913897/1‑76 (MQ=255)

                                                                     aCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTc  <  1:2022134/76‑1 (MQ=255)

CAGCTGATGCTTAATGTACGGGTTACGGAAACGCCCGGTGACTGCACTGGCGAAAGATTCCAGTTCATCACGAAGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTC  >  NC_000913/1607637‑1607781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`