Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,766,382 C→G P218A (CCC→GCC)  b2632 → putative GTP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,766,3820CG100.0% 378.5 / NA 145P218A (CCC→GCC) b2632putative GTP‑binding protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (67/78);  total (67/78)

Only 100 of 146 total aligned reads displayed.

TGCCGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGAC  >  NC_000913/2766309‑2766453
                                                                         |                                                                       
 gCCGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCca                                                                      >  1:247376/1‑76 (MQ=255)
  ccGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCcag                                                                     <  1:5328328/76‑1 (MQ=255)
  ccGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCcag                                                                     <  1:2607871/76‑1 (MQ=255)
   cGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCccgc                                                                    >  2:4411551/1‑76 (MQ=255)
   cGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCcagc                                                                    >  1:468362/1‑76 (MQ=255)
   cGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGGGAGGGCGGAGCGGATGATTAAGGGCCGCCCGGGGGAGGCcagc                                                                    >  2:3910491/1‑76 (MQ=255)
     tgtCGGTGCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCcagcag                                                                  >  1:2003104/1‑76 (MQ=37)
      gtCGGTTCGCCTGCAGTGGGGGCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCagcagc                                                                 <  2:1625727/76‑1 (MQ=255)
      gtCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCagcagc                                                                 >  1:4707566/1‑76 (MQ=255)
      gtCGGTTCCCTGGCAGGGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCagcagc                                                                 <  2:1156145/76‑1 (MQ=21)
        cGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGccc                                                               <  2:3315676/76‑1 (MQ=255)
         ggTTCGCCTGCAGTGGGGACTAAGTGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCg                                                              <  1:3830612/76‑1 (MQ=255)
         ggTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCg                                                              >  2:313787/1‑76 (MQ=255)
            tCGCCTGCTGTGGGGACTAAGGGGGATGGCAGAGGGGGTGATTAAGTGTCGTCCGCGTGAGGCCAGCAGCCCGgta                                                           <  2:5626036/76‑1 (MQ=255)
            tCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGgta                                                           >  2:4531344/1‑76 (MQ=255)
            tCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGgta                                                           >  1:155771/1‑76 (MQ=255)
             cGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGggag                                                          >  2:4928385/1‑76 (MQ=255)
              gCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGgtagt                                                         >  1:1437712/1‑76 (MQ=255)
              gCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGgtagt                                                         >  1:1262962/1‑76 (MQ=255)
               ccTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGgtagta                                                        <  2:2624833/76‑1 (MQ=255)
               ccTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGgtagta                                                        <  2:5259152/76‑1 (MQ=255)
                cTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGtagtag                                                       >  1:5792173/1‑76 (MQ=255)
                 ttcAGTGGGGACTAAGGGTGATGCCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAgc                                                      <  1:4308143/74‑1 (MQ=25)
                 tGCAGTGGGGCCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCCGCAGCCCGGTAGTAgc                                                      <  1:1077032/76‑1 (MQ=25)
                 tGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAgc                                                      <  2:5792172/76‑1 (MQ=255)
                 tGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAgc                                                      >  1:2460080/1‑76 (MQ=255)
                  gCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCAGCGTGAGGCCAGCAGCCCGGTAGTAgcg                                                     >  1:3254292/1‑76 (MQ=255)
                   gaGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAgcgc                                                    <  2:2026719/75‑1 (MQ=255)
                    aGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCt                                                   <  2:3170060/76‑1 (MQ=255)
                      tGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTAc                                                 >  1:3814564/1‑76 (MQ=255)
                        ggtaCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTg                                               <  1:4979173/73‑1 (MQ=255)
                        gggACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTg                                               >  1:2090361/1‑76 (MQ=255)
                        gggACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTg                                               <  2:3340097/76‑1 (MQ=255)
                        gggACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGGAGCGCTaacg                                               >  1:960892/1‑73 (MQ=25)
                          gACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCa                                             <  2:3512888/76‑1 (MQ=255)
                          gACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCa                                             >  1:1847262/1‑76 (MQ=255)
                          gACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCa                                             >  1:5167038/1‑76 (MQ=255)
                          gACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGCAGTAGCGCTACTGCa                                             >  2:5258002/1‑76 (MQ=255)
                           aCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCaa                                            >  2:753267/1‑76 (MQ=255)
                           aCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCaa                                            <  1:4212955/76‑1 (MQ=255)
                           aCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCaa                                            <  2:2187873/76‑1 (MQ=255)
                           aCTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGCAGTAGCGCTACTGCaa                                            >  2:5039847/1‑76 (MQ=255)
                            cTAAGTGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAAc                                           <  1:5773740/76‑1 (MQ=255)
                            cTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAAc                                           >  2:1139336/1‑76 (MQ=255)
                                gggTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATcc                                       <  2:155771/76‑1 (MQ=255)
                                gggTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATcc                                       >  2:1544014/1‑76 (MQ=255)
                                 ggTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATccc                                      >  1:4591181/1‑76 (MQ=255)
                                 ggTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATccc                                      >  2:1328352/1‑76 (MQ=255)
                                   tGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCtt                                    <  1:4554585/76‑1 (MQ=255)
                                   tGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCtt                                    >  1:281609/1‑76 (MQ=255)
                                    ggtGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCttt                                   <  2:5727821/74‑1 (MQ=255)
                                    gATGGGAGGGCGTATGCTTAAATCTCTGCCGCGTGAGGCCAGCAGCCCGGTATTAGCGCTGCTGCAACATCGCttt                                   <  1:5143766/76‑1 (MQ=255)
                                    gATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCttt                                   >  1:5049731/1‑76 (MQ=255)
                                     aTGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTc                                  <  1:3955172/76‑1 (MQ=255)
                                      tGGCAGAGCGGATGAGTAAGTGTCTGCCGCCGGACGCCAGCAGCCCGGTAGTAGCGCTACTGCACCATCCCTTTca                                 >  2:3651139/1‑75 (MQ=255)
                                       ggCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCga                                >  1:2513381/1‑75 (MQ=255)
                                       ggCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCga                                <  1:5651615/76‑2 (MQ=255)
                                        gCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCgaa                               <  2:284495/76‑3 (MQ=255)
                                        gCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCgaa                               <  1:3521229/76‑3 (MQ=255)
                                          gaagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGGAGTAGCGCTACTGCAACATCCCTTTCGAACa                             <  2:5683627/74‑1 (MQ=25)
                                          agagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGCAGCGCTACTGCAACATCCCTTTCGAACa                             >  2:4547804/1‑76 (MQ=37)
                                            agCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACaac                           <  2:2586285/76‑3 (MQ=37)
                                            agCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACaac                           <  1:4077165/76‑3 (MQ=37)
                                             gCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACaacg                          <  2:5059141/76‑4 (MQ=25)
                                             gCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACaacg                          <  2:5390128/76‑4 (MQ=37)
                                             gCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACaacg                          <  1:3594120/76‑4 (MQ=37)
                                             gCGGATGATTAAGTGACAGCCGCTGGAGGCCAGCAGACCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACaacg                          <  2:5104454/76‑4 (MQ=255)
                                                 atgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAg                      >  2:2039758/1‑76 (MQ=255)
                                                 atgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAg                      >  1:1532754/1‑76 (MQ=255)
                                                 atgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAg                      >  1:3165541/1‑76 (MQ=255)
                                                  tgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGc                     >  2:2388854/1‑76 (MQ=255)
                                                  tgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGc                     <  2:1384103/76‑1 (MQ=255)
                                                  tgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGc                     >  2:3317887/1‑76 (MQ=255)
                                                   gatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGcc                    >  1:4009649/1‑76 (MQ=255)
                                                     ttAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCg                  >  2:1933245/1‑76 (MQ=255)
                                                     ttAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCg                  >  1:3746567/1‑76 (MQ=255)
                                                        aGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGa               <  2:4808919/76‑1 (MQ=255)
                                                        aGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGa               <  1:1211456/76‑1 (MQ=255)
                                                        aGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGa               <  2:2538494/76‑1 (MQ=255)
                                                         gtgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAg              >  2:3001934/1‑76 (MQ=255)
                                                         gtgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAg              <  1:1415224/76‑1 (MQ=255)
                                                         gtgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAg              <  1:5553148/76‑1 (MQ=255)
                                                          tgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGc             <  2:4591180/76‑1 (MQ=255)
                                                          tgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGc             <  1:3908636/76‑1 (MQ=255)
                                                           gtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCa            >  2:3991811/1‑76 (MQ=255)
                                                             cTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAgg          >  2:2973290/1‑76 (MQ=255)
                                                             cTGCCGCGTCACGCCAGCAGCCCGGCACTAGCGCAACTCCAACATCCCTTTCGAACAACGGAAGCCTGGcagcagc          >  2:630378/1‑75 (MQ=255)
                                                              tGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGc         <  2:1354789/76‑1 (MQ=255)
                                                              tGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGc         >  1:818832/1‑76 (MQ=255)
                                                               gCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCa        <  2:836/76‑1 (MQ=255)
                                                               gCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCa        <  1:4451721/76‑1 (MQ=255)
                                                                ccGCGTGAGGCCATCAGCCCGGTAGTAGCTCTACTGCAACATCCCTTTCGAACAACGGTAGCCCTGGAGCAGGCAc       <  1:785791/76‑1 (MQ=255)
                                                                ccGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACCACGGTAGCCCGGGAgcacgcac       >  2:1629627/1‑76 (MQ=255)
                                                                ccGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCAc       <  1:866211/76‑1 (MQ=255)
                                                                ccGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCAc       >  2:1750000/1‑76 (MQ=255)
                                                                ccGCGGGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCAc       <  2:276349/76‑1 (MQ=255)
                                                                  gcgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGt     >  1:4599904/1‑76 (MQ=255)
                                                                  gcgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGt     <  1:210534/76‑1 (MQ=255)
                                                                  gcgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGt     >  2:2459856/1‑76 (MQ=255)
                                                                     tGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGAc  >  2:2423395/1‑76 (MQ=255)
                                                                         |                                                                       
TGCCGTGTCGGTTCGCCTGCAGTGGGGACTAAGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGAC  >  NC_000913/2766309‑2766453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: