| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,806,762 | T→C | intergenic (+617/‑876) | proX → / → b2682 | high‑affinity transport system for glycine betaine and proline/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,806,762 | 0 | T | C | 99.3% | 349.5 / NA | 137 | intergenic (+617/‑876) | proX/b2682 | high‑affinity transport system for glycine betaine and proline/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (59/77); minor base A (1/0); total (60/77) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
TCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTGGG > NC_000913/2806689‑2806834 | tCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTctgctgctg > 2:3567247/1‑76 (MQ=255) ccGCGGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgg < 2:797877/76‑1 (MQ=255) cGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTggg < 1:2240925/76‑1 (MQ=255) gCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgggg > 1:4902700/1‑76 (MQ=255) cgggCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGa < 2:1332023/74‑1 (MQ=255) tGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGAt > 1:100816/1‑76 (MQ=255) tGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGGTGGCACTATTATGAGCGGTCTGCTGCTGGGGAt > 2:4854771/1‑76 (MQ=255) tGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGGGGGTGGCACTATTATGAGCGGTCTGCTGCTGGGGAt > 1:513949/1‑76 (MQ=255) gCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCt < 1:3969140/76‑1 (MQ=255) aGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTg > 1:84600/1‑76 (MQ=255) aGCGAAGCTGGCTCCAACGCATAAACGCGGCAAAGCGGCTGGAACTATTACGAGCCGCCCGGTGCTGGCGATCTTg > 2:798570/1‑76 (MQ=255) gCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGc > 1:3504553/1‑76 (MQ=255) gCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGc < 2:648766/76‑1 (MQ=255) cGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCt < 1:5012349/76‑1 (MQ=255) gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTg < 2:4008452/76‑1 (MQ=255) gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTg > 2:2486601/1‑76 (MQ=255) gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTg > 1:2907934/1‑76 (MQ=255) gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTg < 2:753901/76‑1 (MQ=255) gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATActgctg > 2:2455244/1‑76 (MQ=255) gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGGTGGCACTATTATTAGCGGTCTGCTGCTGGGCAGCTTGCTg > 1:3327456/1‑76 (MQ=255) cGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGc > 1:5504656/1‑76 (MQ=255) gCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCa > 1:3323622/1‑76 (MQ=255) gCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCa < 2:2773143/76‑1 (MQ=255) gCTGGCGTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCa < 2:4789055/76‑1 (MQ=255) ggCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACgg < 1:3192243/76‑1 (MQ=255) ggCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACgg > 2:78567/1‑76 (MQ=255) gCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGa < 1:2117921/76‑1 (MQ=255) gttCACCGGAGAAACGCGGCAAAGTGGTTGGTACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGAc < 2:5647715/75‑1 (MQ=255) cTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGAc < 1:3489266/76‑1 (MQ=255) cTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGAc > 1:5100015/1‑76 (MQ=255) cTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGAc < 2:4276318/76‑1 (MQ=255) ttCAGCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACa < 2:916776/76‑1 (MQ=255) ttCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACa < 2:4449868/76‑1 (MQ=255) tCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAg < 1:3761187/76‑1 (MQ=255) ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg > 2:4785652/1‑76 (MQ=255) ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg > 1:5101585/1‑76 (MQ=255) ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg > 1:5441185/1‑76 (MQ=255) cGGATAAACGCGGCAAAGCGGTTGGCACTATTATGAGCGGTCTGCTGATGGGGATCACGCTGGCACGGACCGTCGc > 2:3209712/1‑76 (MQ=255) ggATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGcc < 2:2985983/76‑1 (MQ=255) ggATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGcc > 2:3291728/1‑76 (MQ=255) ggATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGcc > 2:3462209/1‑76 (MQ=255) gATAAACGCGTCGAAGTGGTTGGTGCGATGGTGAGCGGTCTGCTGCGGGGGATCTTTTTGGTACGGCCTGTTGCCg < 1:1711800/76‑1 (MQ=255) gATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCg < 2:4084875/76‑1 (MQ=255) gATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCg < 1:1714778/76‑1 (MQ=255) aaaCGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGAt < 2:611058/76‑1 (MQ=255) aaaCGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGAt < 1:203670/76‑1 (MQ=255) aaCGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGAtt > 1:2450694/1‑76 (MQ=255) aCGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCCGATTg > 2:2693334/1‑76 (MQ=255) gcgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCt > 1:2392470/1‑76 (MQ=255) gcgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCt < 1:1920364/76‑1 (MQ=255) cgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTg < 1:2427442/76‑1 (MQ=255) ggCAAAGTGGTTGGCCCTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTgg < 1:5097503/76‑1 (MQ=255) ggCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTgg > 2:1622734/1‑76 (MQ=255) gCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGc < 1:2461869/76‑1 (MQ=255) gCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGc < 1:3317041/76‑1 (MQ=255) gCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGc < 1:4716409/76‑1 (MQ=255) cAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCg < 2:1522812/76‑1 (MQ=255) aaaGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGa > 1:1376471/1‑76 (MQ=255) aaGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGaa > 1:1097736/1‑76 (MQ=255) aGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAt < 2:3467283/76‑1 (MQ=255) gTGGTTGGGACTATGATGGGGGGTCTGCGGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtc < 2:116698/76‑1 (MQ=255) gTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtc > 2:5073898/1‑76 (MQ=255) gTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtc < 1:3198188/76‑1 (MQ=255) tGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACa < 1:5137002/53‑1 (MQ=255) tGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtct < 1:853570/76‑1 (MQ=255) ggTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtctc < 1:2860004/76‑1 (MQ=255) gTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGCATCTcg > 1:5808161/1‑76 (MQ=255) gTTGGCACTATCATGAGCGGTGTTCTGCTGGGGATCTTGCTGGGGCGGACAGTTGGCGGATTGCTGGGGAATCTcg < 2:5203284/76‑1 (MQ=255) ttGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcgg < 1:4627221/76‑1 (MQ=255) tGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcggc < 1:4762969/76‑1 (MQ=255) tGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcggc > 1:3527616/1‑76 (MQ=255) ggCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcggcg < 2:2958761/76‑1 (MQ=255) cACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCggcggc < 1:438940/76‑1 (MQ=255) cACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCggcggc < 1:4430204/76‑1 (MQ=255) aCTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCggcggcg > 1:5667569/1‑75 (MQ=255) aCTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCt > 1:73627/1‑76 (MQ=255) aCTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCt < 1:2994983/76‑1 (MQ=255) cTATTATGGGGGGTCGGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTg < 2:216823/76‑1 (MQ=255) cTAGTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTg < 2:1992561/76‑1 (MQ=255) tattatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTgg < 2:3619297/76‑1 (MQ=255) tattatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTgg > 2:1678774/1‑76 (MQ=255) attatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGgc < 2:5512231/76‑1 (MQ=255) attatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGgc < 1:962301/76‑1 (MQ=255) attatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGgc < 1:3961296/76‑1 (MQ=255) ttatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGgcg < 2:2003585/76‑1 (MQ=255) tatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGgcgc < 1:3449990/76‑1 (MQ=255) tGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAc > 1:2341341/1‑76 (MQ=255) tGAGCGGTCTGCTGCTGGGGAACTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAc < 2:2518689/76‑1 (MQ=255) gAGCGGTCTGCTGCTGTGCATATTGCTGGCGCGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAcc < 1:5468287/76‑1 (MQ=255) gAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAcc > 1:4469604/1‑76 (MQ=255) aGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCCGGCGCaacc > 2:3046824/1‑73 (MQ=255) tgggTATGCTGCTGGAGAGCTTTCTGGCGCGCGCAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCGCCGt < 1:500028/74‑1 (MQ=255) ggTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCt < 1:3801807/76‑1 (MQ=255) tCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCttt < 1:673403/76‑1 (MQ=255) ctgctgctgGGGATATTGCGGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCtctt > 2:4620708/1‑76 (MQ=255) tgctgcTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTg > 1:5317477/1‑76 (MQ=255) tgctgcTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTg > 1:2828523/1‑76 (MQ=255) tgctgcTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTg > 2:911705/1‑76 (MQ=255) gctgctGGGGCTCTTGCTGGCGCGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTgg < 1:5733578/76‑1 (MQ=255) ctgctgGGGATCTTGCTGGCTCGGACAGTTGCCGGATTGCTGGCGCATCTCGGCGGCTGGCGCACCGTCTTTTggg < 2:1852456/76‑1 (MQ=255) | TCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTGGG > NC_000913/2806689‑2806834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |