| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,548,005 | C→T | G701D (GGT→GAT) | malP ← | maltodextrin phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,548,005 | 0 | C | T | 98.8% | 498.6 / ‑6.2 | 162 | G701D (GGT→GAT) | malP | maltodextrin phosphorylase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (71/89); minor base G (1/1); total (72/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 172 total aligned reads displayed.
TCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCA > NC_000913/3547933‑3548076 | tCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCaccttatctt < 1:2353468/76‑1 (MQ=255) cGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCttt < 2:3859117/76‑1 (MQ=255) cGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCttt < 1:3395686/76‑1 (MQ=255) gAAGGCATGCTTCTCGCCGTCTCTGTATTGACCGCTTTCCATCTCTTTCAATACTTCGTCCGTCACCTTATCTttc < 1:1073126/76‑1 (MQ=255) gAAGGCATCATTATCGCCGTCCCTGTATTTACCGCTTTCCAGCGCTTTCAAGACTGCGTCCAGCACCTTATCTttc < 1:4873254/76‑1 (MQ=255) aaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttct < 1:974060/76‑1 (MQ=255) aaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttct > 2:2659591/1‑76 (MQ=255) aGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTAtctttctt < 1:4601100/76‑1 (MQ=255) ggCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttcttc < 2:4426602/76‑1 (MQ=255) gCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTcc < 1:3030092/76‑1 (MQ=255) aTGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc > 2:3353108/1‑76 (MQ=255) aTGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc > 2:3367383/1‑76 (MQ=255) aTGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc > 1:4961396/1‑76 (MQ=255) aTGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc < 1:3896524/76‑1 (MQ=255) tGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATGCTGCGTCCAGCACCTTATCTTTCTTCCGcc < 2:2406747/76‑1 (MQ=255) tGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGcc > 1:3110855/1‑76 (MQ=255) gCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCa > 1:481758/1‑76 (MQ=255) cTTATCGCCTGCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAt < 2:5287866/76‑1 (MQ=255) ttATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCCtt > 2:5314520/1‑76 (MQ=255) tATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAttt < 2:4840315/76‑1 (MQ=255) tATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAttt < 2:5602677/76‑1 (MQ=255) tATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAttt > 2:44273/1‑76 (MQ=255) aTCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTc < 1:1783365/76‑1 (MQ=255) tCGCCGTCGCTGTATTTACCGCTTTCCATCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCa < 2:4672006/76‑1 (MQ=255) tCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCa < 2:2660375/76‑1 (MQ=255) tCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCa > 2:4560300/1‑76 (MQ=255) tCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTCTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCa < 2:724447/76‑1 (MQ=255) cGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCAc > 2:2410026/1‑76 (MQ=255) cGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCAc > 2:5077029/1‑76 (MQ=255) gCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCAcc > 1:3509333/1‑76 (MQ=255) ccGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCg < 2:3553420/76‑1 (MQ=255) cGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCgg < 1:1838016/76‑1 (MQ=255) gTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCggg > 2:2273721/1‑76 (MQ=255) gTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCggg > 2:2808810/1‑76 (MQ=255) tCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAt > 1:3339581/1‑66 (MQ=255) tCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGt < 2:1661884/76‑1 (MQ=255) tCGCTGGATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGt > 2:5549630/1‑76 (MQ=255) cGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTc > 1:5436106/1‑76 (MQ=255) gCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCg < 1:168649/76‑1 (MQ=255) gCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCg > 1:2680899/1‑76 (MQ=255) tGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTa > 2:3501740/1‑76 (MQ=255) tGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTa < 1:3520511/76‑1 (MQ=255) tGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTa < 1:1104198/76‑1 (MQ=255) tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGc > 2:3034760/1‑76 (MQ=255) tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGc < 1:3099764/76‑1 (MQ=255) tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGc < 2:2512073/76‑1 (MQ=255) aTTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGcc < 1:597364/76‑1 (MQ=255) tttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt > 2:4187067/1‑76 (MQ=255) tttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTATTCCGCCATTTCACAGGGTCGTAGCCt > 1:1038847/1‑76 (MQ=255) ttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCTTAGCCtt > 1:619270/1‑76 (MQ=255) tACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCttt < 1:1389715/76‑1 (MQ=255) tACCGCTTCCCAGCTCTTCCAATCCGGCGCCGAGCCCCGTATCTGTCCACCGCCATGTCCCCGGGTCGTAGCCgtt < 2:1511979/76‑1 (MQ=255) ccGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTgg < 1:5670707/76‑1 (MQ=255) gCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGcc > 2:3896400/1‑76 (MQ=255) gCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGcc > 2:412804/1‑76 (MQ=255) tttCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAg > 1:4559371/1‑76 (MQ=255) tcccAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGa < 2:1266082/74‑1 (MQ=255) tCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCACTTCACCGGGTCGTAGCCTTTGGCCAGaa < 1:5378376/76‑1 (MQ=255) ccAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAt > 2:1712437/1‑76 (MQ=255) ccAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAt < 1:12143/76‑1 (MQ=255) cAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAtt < 1:1324651/76‑1 (MQ=255) gCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGc < 2:1057523/76‑1 (MQ=255) tctTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCt > 2:3315403/1‑76 (MQ=255) tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTc > 1:1932583/1‑76 (MQ=255) tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTc < 2:4289580/76‑1 (MQ=255) tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTc < 1:2681462/76‑1 (MQ=255) cAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACt < 2:3548266/76‑1 (MQ=255) cAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACt > 2:2673082/1‑76 (MQ=255) aaTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACtt > 2:4879246/1‑76 (MQ=255) aaTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACtt < 1:4775036/76‑1 (MQ=255) aaTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACtt < 1:2863478/76‑1 (MQ=255) aTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTg < 2:920973/76‑1 (MQ=255) aTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTg > 1:5301153/1‑76 (MQ=255) tACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGt < 1:1635265/76‑1 (MQ=255) aCTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGtt < 1:2273721/76‑1 (MQ=255) cTGCGTCCAGCACCTTATCTTTCTTCCTCCATTTCACCGTGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTc < 1:1843038/76‑1 (MQ=255) cTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTc < 1:672772/76‑1 (MQ=255) cTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTc > 2:2150917/1‑76 (MQ=255) tGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTcc < 2:1170303/76‑1 (MQ=255) gCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCa > 2:1551434/1‑76 (MQ=255) gCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCa < 1:2410026/76‑1 (MQ=255) gCGGCCAGCACGTTAGCGTGCTTCCGCCATTTCGCGGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCa < 2:600986/76‑1 (MQ=255) cGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCAc < 2:1039288/76‑1 (MQ=255) gTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg > 1:4124252/1‑76 (MQ=255) gTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg > 1:1488153/1‑76 (MQ=255) gTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg > 2:5459123/1‑76 (MQ=255) gTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg < 1:5387884/76‑1 (MQ=255) gTCCAGCACCTTATCTTGCTGCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg < 2:363182/76‑1 (MQ=255) tCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg > 2:4162518/1‑75 (MQ=255) tCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg < 1:4162519/75‑1 (MQ=255) ccAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGt < 2:1129201/76‑1 (MQ=255) ccAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGt < 1:1257575/76‑1 (MQ=255) cAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGACAGAATTGCCTTCACTTGTTCCACGGTa > 1:2253129/1‑76 (MQ=255) cACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGa > 2:1903929/1‑76 (MQ=255) cACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGa > 1:1228429/1‑76 (MQ=255) accttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc > 1:1754718/1‑76 (MQ=255) accttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc > 1:1390192/1‑76 (MQ=255) ccttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAcc < 2:1889951/76‑1 (MQ=255) acttatcgtTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAcc < 1:3194537/75‑1 (MQ=255) cttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCa > 1:760707/1‑76 (MQ=255) | TCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCA > NC_000913/3547933‑3548076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |