Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,944,676 | 2 bp→GC | intergenic (+20/+75) | trpT → / ← yifDA | tRNA‑Trp/transcription regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,944,676 | 0 | C | G | 99.0% | 284.8 / ‑4.5 | 102 | intergenic (+20/+76) | trpT/yifDA | tRNA‑Trp/transcription regulator |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base G (40/61); total (40/62) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
* | NC_000913 | 3,944,677 | 0 | G | C | 98.1% | 276.7 / ‑4.2 | 103 | intergenic (+21/+75) | trpT/yifDA | tRNA‑Trp/transcription regulator |
Reads supporting (aligned to +/- strand): ref base G (0/2); new base C (40/61); total (40/63) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.20e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 103 total aligned reads displayed.
CCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAACG‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTC > NC_000913/3944607‑3944748 || ccGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAgg > 1:3413995/1‑76 (MQ=255) cGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGa < 1:807636/76‑1 (MQ=255) cGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGa > 2:1160698/1‑76 (MQ=255) cGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGa < 2:3967718/76‑1 (MQ=255) cGGTCGCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGa < 1:5780477/76‑1 (MQ=255) ggTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAt < 1:893290/76‑1 (MQ=255) ggTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAt < 1:4418329/76‑1 (MQ=255) ggTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAt > 1:4182926/1‑76 (MQ=255) gTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAtt > 2:4683400/1‑76 (MQ=255) tcCAAAACGGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttt < 2:1452139/76‑1 (MQ=255) tcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttt > 1:2349525/1‑76 (MQ=255) tcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttt < 1:5014928/76‑1 (MQ=255) tcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttt < 1:4721283/76‑1 (MQ=255) tcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttt < 2:3540800/76‑1 (MQ=255) tcCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttt < 2:3504562/76‑1 (MQ=255) cAACACCGGGTGTTGGGAGTTGTAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttttt < 1:3617138/76‑1 (MQ=255) cAAAGCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttttt < 2:1100413/76‑1 (MQ=255) cAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttttt > 1:4741802/1‑76 (MQ=255) cAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAttttttt < 2:1191499/76‑1 (MQ=255) aaaaCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAtttttttt > 1:2759045/1‑76 (MQ=255) aaaaCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGAtttttttt > 2:4452084/1‑76 (MQ=255) aaaCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTa > 2:4312953/1‑76 (MQ=255) aaaCCGGGTGTGGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTa < 2:5771444/76‑1 (MQ=255) acccGGGGGTGGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTAt < 2:5626164/74‑1 (MQ=255) aaCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTAt > 2:3796893/1‑76 (MQ=255) aaCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTAt < 1:4199169/76‑1 (MQ=255) aaCCGGGTCTAGTGATTTCGCGTATCTCGGCCCCTGCCAGAAATCATCTTTATCG‑AACGCTAAGGATTTTTTTTAt < 1:3856067/76‑1 (MQ=255) aCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATc > 2:3531990/1‑76 (MQ=255) aCCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATc < 1:3498779/76‑1 (MQ=255) ccGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCt < 2:1844237/76‑1 (MQ=255) ccGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCt < 2:3301979/76‑1 (MQ=255) ggggTGTGGGGGGTTGGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTg < 2:5517452/75‑1 (MQ=255) cGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTg < 1:1286580/76‑1 (MQ=255) cGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTg < 2:5301047/76‑1 (MQ=255) cGGGTGTGGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTg < 2:5017621/76‑1 (MQ=255) gggTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGa < 2:247106/76‑1 (MQ=255) ggTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGaa > 1:5627362/1‑76 (MQ=255) ggTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGaa > 2:4577391/1‑76 (MQ=255) ggTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGaa < 1:690680/76‑1 (MQ=255) gtgtTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGaaa > 1:3488690/1‑76 (MQ=255) gtTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGACAGC‑TAAGGATTTTTTTTATCTGAAATa < 1:919053/76‑1 (MQ=255) ttGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATaa < 1:3458007/76‑1 (MQ=255) ttGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATaa > 2:3959008/1‑76 (MQ=255) tGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAAc < 2:2101335/76‑1 (MQ=255) tGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAAc < 2:4483814/76‑1 (MQ=255) gTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCctct < 1:5529151/76‑1 (MQ=255) ttCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCtctc < 2:690210/76‑1 (MQ=255) cGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCg > 1:815214/1‑76 (MQ=255) cGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCg < 2:4610022/76‑1 (MQ=255) gAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGa > 1:3342741/1‑76 (MQ=255) gAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGa > 2:741089/1‑76 (MQ=255) gAGTCTCTCCGCCCCTGCCAGAAATAATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGa > 1:2793250/1‑76 (MQ=255) gAGTCTCTCCGCCCATGCAAGAAATCATACTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCgt > 2:4231539/1‑75 (MQ=255) aGTCTCGCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGaa < 2:5603451/76‑1 (MQ=255) gTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAg > 2:1259061/1‑76 (MQ=255) gTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAg > 2:3216885/1‑76 (MQ=255) gTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAg < 2:553210/76‑1 (MQ=255) tctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTaa > 1:5664046/1‑76 (MQ=255) tctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTaa > 1:2532447/1‑76 (MQ=255) tctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTaa < 2:2349525/76‑1 (MQ=255) ctcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTaaa > 1:466568/1‑76 (MQ=255) tcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGCTTTTTTTTATCTGTAATAAACCTCTCCGAAGGAAAt > 1:3287830/1‑76 (MQ=255) tcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCtctc < 1:5740920/66‑1 (MQ=255) tcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCtctc > 2:5740919/1‑66 (MQ=255) tcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAAt < 1:1798097/76‑1 (MQ=255) tcCGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAAt < 2:5627360/76‑1 (MQ=255) ccGCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATc < 1:2855946/76‑1 (MQ=255) gCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCctc > 2:4524869/1‑61 (MQ=255) gCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCctc < 1:4524870/61‑1 (MQ=255) gCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCt > 2:3498373/1‑76 (MQ=255) gCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCt < 2:3762127/76‑1 (MQ=255) gCCCCTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGACTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCt > 1:4473282/1‑76 (MQ=255) cccTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTc < 1:948025/76‑1 (MQ=255) cccTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTc < 2:1657399/76‑1 (MQ=255) cccTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTc < 1:3780193/76‑1 (MQ=255) cTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGTATTTTTTTTATCTGAAATAACCCTCTCTGAATTAAATCCTTCTa > 1:639841/1‑76 (MQ=255) cTGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTa > 1:640201/1‑76 (MQ=255) tGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCt < 2:3507004/71‑1 (MQ=255) tGCCAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCt > 1:3507004/1‑71 (MQ=255) ccAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCg < 2:5457648/76‑1 (MQ=255) cAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCgg < 1:2727481/76‑1 (MQ=255) cAGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCgg < 2:199458/76‑1 (MQ=255) aGAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGc < 1:5108490/76‑1 (MQ=255) gAAATCATCCTTATCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCa < 1:1160698/76‑1 (MQ=255) gAAATCATCCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTGCCGGCa < 2:3413995/76‑1 (MQ=255) atcatcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATcc > 2:5117587/1‑76 (MQ=255) catcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCtt < 1:547893/76‑1 (MQ=255) catcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCtt < 2:5280001/76‑1 (MQ=255) atcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTg < 1:2545183/76‑1 (MQ=255) atcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTg > 2:1255360/1‑76 (MQ=255) atcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTg < 2:1290369/76‑1 (MQ=255) atcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTg < 1:4683401/76‑1 (MQ=255) tcCTTAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgc > 1:392322/1‑76 (MQ=255) ttAGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgccag > 1:5296197/1‑76 (MQ=255) ttAGCGAAAGC‑TAAGGATTTTTTTTAGCTGAAATAACCCACTCCGAAGAAAATCCTTCGACCGGCATCCATgccag > 1:5770975/1‑76 (MQ=255) aGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgccagcc < 2:2090893/76‑1 (MQ=255) aGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgccagcc < 2:3287830/76‑1 (MQ=255) aGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgccagcc < 1:5165357/76‑1 (MQ=255) aGCGAAAGC‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTgccagcc > 1:831583/1‑76 (MQ=255) aaaaG‑TTAGGATGTTTTTGATCTGAAATAACCCGCGCCGAAGTAAATCCTGCTAACGGCATCCTTGCCAGCCAGTc < 2:5565029/76‑1 (MQ=255) || CCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAACG‑TAAGGATTTTTTTTATCTGAAATAACCCTCTCCGAAGTAAATCCTTCTACCGGCATCCTTGCCAGCCATTC > NC_000913/3944607‑3944748 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |