| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,741,574 | 2 bp→GA | coding (94‑95/1374 nt) | ydhE → | putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,741,574 | 0 | A | G | 100.0% | 243.6 / NA | 94 | S32D (AGT→GAT) | ydhE | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (52/42); total (52/42) | |||||||||||
| * | NC_000913 | 1,741,575 | 0 | G | A | 100.0% | 272.1 / NA | 94 | S32D (AGT→GAT) | ydhE | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (52/42); total (52/42) | |||||||||||
CGTCTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCAGTACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCTATCTGGC > NC_000913/1741505‑1741643 || cgTCTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCg > 2:98932/1‑76 (MQ=255) gTCTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGt > 2:3649014/1‑76 (MQ=255) gTCTGTTATTAGCATTAGCAATCCCGGTGATTATCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGt > 1:2228899/1‑76 (MQ=255) tCTGTTATTAGCATTAGCACTCCCGGTGATTCTCGCGCACCTCGCCCACCCTGCGATGGGTTTTGTCGATAACGTg > 2:2728965/1‑76 (MQ=255) tCTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTg > 1:3805334/1‑76 (MQ=255) tCTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTg > 2:2698233/1‑76 (MQ=255) cTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCCAACTGCGATGGGTTTTGTCGATACCGtca > 2:3652295/1‑74 (MQ=255) cTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGa > 2:4782124/1‑76 (MQ=255) tGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGAt > 1:573602/1‑76 (MQ=255) tGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGAt > 1:2830933/1‑76 (MQ=255) ttattaGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATgg > 1:1697491/1‑76 (MQ=255) ttattaGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGCTTTGTCGAGACCGTGATgg > 1:2177114/1‑76 (MQ=255) tattaGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATggc > 2:3951793/1‑76 (MQ=255) tattaGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATggc > 2:3747241/1‑76 (MQ=255) tattaGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATggc < 1:4642058/76‑1 (MQ=255) tattaGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATggc > 1:3114723/1‑76 (MQ=255) ttagcattagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATggcgg < 1:2254310/76‑1 (MQ=255) agcattagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGTGTTTTGTCGATACCGTGATggcgggc < 1:1616339/76‑1 (MQ=255) agcattagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATggcgggc < 2:878252/76‑1 (MQ=255) cattagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGgcgggcgg > 2:2291418/1‑76 (MQ=255) cattagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGACACCGGGACggcgggccg > 2:1145514/1‑74 (MQ=255) attagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGggcggc > 1:2702152/1‑76 (MQ=255) attagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGggcggc < 1:4237242/76‑1 (MQ=255) attagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGggcggc < 1:593110/76‑1 (MQ=255) ttagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCt < 2:3805333/76‑1 (MQ=255) ttagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCt > 1:3520779/1‑76 (MQ=255) ttagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCt < 1:4549101/76‑1 (MQ=255) ttagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCt < 1:4425825/76‑1 (MQ=255) gtagcaAGCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGCTTTGTCGATACCGTGATGGCGGGCGGCt > 1:454528/2‑76 (MQ=255) tagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCta < 1:3747241/76‑1 (MQ=255) tagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCta > 2:5500428/1‑76 (MQ=255) tagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCta > 1:1529911/1‑76 (MQ=255) tagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCta < 1:1099534/76‑1 (MQ=255) tagcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGACACCGTGATGGCGGGCCGCtc > 2:867985/1‑75 (MQ=255) gcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCtata < 2:1877647/76‑1 (MQ=255) gcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCtata < 1:5367902/76‑1 (MQ=255) gcaATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATAACGTGATGGCGGGGGGCtata > 1:536788/1‑76 (MQ=255) caATCCCGGTGATTCTCGCGTAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCtatcg > 2:990906/1‑74 (MQ=255) aTCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTg < 2:261567/76‑1 (MQ=255) aTCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTg > 1:1149451/1‑76 (MQ=255) cccGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑cc > 2:4866708/1‑76 (MQ=255) ccGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCa > 1:5037589/1‑76 (MQ=255) ccGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGGG‑ccc > 2:5127311/1‑75 (MQ=255) ccGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGCG‑CCa > 2:873317/1‑76 (MQ=255) tGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGa < 2:3557575/76‑1 (MQ=255) tGATTCTCGCGCAAATCGCCCAAACTGCGATGCGTTTTGTCGACACCGAGCTGGCGGGCGGCTACAGTGTCCAcct > 2:5071975/1‑75 (MQ=255) gATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGAc > 2:2005343/1‑76 (MQ=255) gATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGAc > 1:1782779/1‑76 (MQ=255) aaTTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCCGCTATAGTG‑CCAACGAc > 2:3153735/2‑76 (MQ=255) ttCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACAt > 1:744423/1‑76 (MQ=255) tctcGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATg < 2:4302273/76‑1 (MQ=255) tctcGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATg < 1:1892556/76‑1 (MQ=255) tctcGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATg > 1:4037299/1‑76 (MQ=255) gcgcAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATggcgg < 2:2008859/76‑1 (MQ=255) cgcAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATggcggc < 1:1264605/76‑1 (MQ=255) cgcAAATCGCCCAAACGGCGATGGGTTTTGTCGATACCGTGATAGCGGGCGGCTATAGTG‑CCACCGACATggcggc < 2:984208/76‑1 (MQ=255) gcAAATCGCCCAAGCTGCGATGGGTTTTGTCGATCCCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGgcggcg < 2:5072548/76‑1 (MQ=255) gcAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATggcggca < 1:1775336/76‑2 (MQ=255) gcAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGgcggcg > 1:2160564/1‑76 (MQ=255) gcAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGgcggcg < 1:1772175/76‑1 (MQ=255) cAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACCTGGcggcgg > 2:3236202/1‑76 (MQ=255) cAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGcggcgg < 1:399250/76‑1 (MQ=255) cAAATCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGcggcgg < 1:5438983/76‑1 (MQ=255) cAAATCGCCCAAACTGCGACGGGTTTTGTCGATACCGAGATGGCGGGCGGCCATAGTG‑CCACCGCCATcgcggtcg > 2:5645049/1‑73 (MQ=255) aaaTCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGGTATAGTG‑CCACCCACCTGGcgggggg > 1:3734613/1‑75 (MQ=255) aaaTCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGcggcggg > 1:4485949/1‑75 (MQ=255) aaTCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGcggcgggc > 1:3734897/1‑74 (MQ=255) aaTCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTc < 2:5256492/76‑1 (MQ=255) aTCGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGcgggggggg > 1:3502671/1‑73 (MQ=255) cGCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCt < 1:3336247/76‑1 (MQ=255) gCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCCCCGACATGGCGGCGGgcgcct > 2:5193065/1‑74 (MQ=255) gCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGCCATGGCGGCGGGCGCtc > 2:1539728/1‑75 (MQ=255) gCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTa < 1:2291418/76‑1 (MQ=255) gCCCAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCCACATGGCGGCGGGCGCTa > 2:1237735/1‑76 (MQ=255) ccAAGCGGCGATGGGTTTTGTCGATACCGTGAGGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATc < 1:3951794/76‑1 (MQ=255) ccAAACTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATc < 1:1493675/76‑1 (MQ=255) aaaCTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCgg < 1:3008887/76‑1 (MQ=255) aaaCTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCgg < 2:1697491/76‑1 (MQ=255) cTGCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTAc < 1:605521/76‑1 (MQ=255) gCGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGGACtt > 1:2919785/1‑76 (MQ=255) gCGAGGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACtt < 2:3191483/76‑1 (MQ=255) cGATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTc < 2:5037588/76‑1 (MQ=255) taTGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCt < 1:4838668/75‑1 (MQ=255) gATGGGTTTTTTCGATCCCGTAATGGCGGGCGGCTATAGTG‑CCCCCGACATGGCGGCGGTCGCTATCGGTGCTTCt < 1:670676/76‑1 (MQ=255) gATGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGGCGCTATTGGGACTTCt > 1:3316595/1‑76 (MQ=255) tGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCTAt < 2:1639696/76‑1 (MQ=255) tGGGTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGGCGCCATCGGGGCCTCTAt > 2:3542543/1‑76 (MQ=255) gggTTTTGTCGATGCCGTGAGGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCTATc < 1:10866/76‑1 (MQ=255) gggTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGGTGCTCTCGGTGCTTTTATc > 1:774922/1‑76 (MQ=255) ggTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACCTGGCCGCGGGCGCCCACGGTACCTCCATcc > 2:5313482/1‑75 (MQ=255) gTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCTATCTg < 2:3541781/76‑1 (MQ=255) gTTTTGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGGCGCCATCGGGAATTTTATCTg > 1:3213493/1‑76 (MQ=255) ttttGTCGATACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACAGGGCGGCGGTCGCTATCGGTACTTCTATCTgg < 2:3249965/76‑1 (MQ=255) tttGTCGATACCGTGATGGCGGTCGGCTATAGTT‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCTATCTGGc < 2:3114723/76‑1 (MQ=255) || CGTCTGTTATTAGCATTAGCAATCCCGGTGATTCTCGCGCAAATCGCCCAAACTGCGATGGGTTTTGTCAGTACCGTGATGGCGGGCGGCTATAGTG‑CCACCGACATGGCGGCGGTCGCTATCGGTACTTCTATCTGGC > NC_000913/1741505‑1741643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |