| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,870,876 | Δ1 bp | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,870,875 | 0 | G | . | 99.2% | 532.1 / ‑4.5 | 118 | coding (366/1764 nt) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (64/53); total (65/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 126 total aligned reads displayed.
GATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACC > NC_000913/3870800‑3870950 | gATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg > 1:3995826/1‑76 (MQ=255)gATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg > 1:3441484/1‑76 (MQ=255)gATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg > 1:3402300/1‑76 (MQ=255)gATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcg > 2:2985278/1‑76 (MQ=255) aggCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTgcgcg > 2:268362/2‑74 (MQ=255) aaaTACCGTGTTTAACGCTTGGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGccc < 2:2063742/75‑1 (MQ=255) aTACCGCTTTTATGGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGc < 1:453098/76‑1 (MQ=255) aTACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGc > 1:2094931/1‑76 (MQ=255) aCCGCTTTTACCGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt < 2:2026078/76‑1 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt > 1:1142855/1‑76 (MQ=255) aCCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCtt < 1:1756879/76‑1 (MQ=255) aCCGCTTGTATCGGTTGGAGGTATGTCGGCCCCAGAGCGTGTGACGGAAATATTTTCAGCGTCTGC‑GCGCCGGCtt < 2:662025/76‑1 (MQ=255) ccGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTc < 1:1323572/76‑1 (MQ=255) ccGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTc < 1:3952881/76‑1 (MQ=255) ccGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTc > 1:2309230/1‑76 (MQ=255) cGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCg > 2:4678099/1‑76 (MQ=255) cGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCg < 1:2798419/76‑1 (MQ=255) cGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCg < 1:3584990/76‑1 (MQ=255) gtttttAACGCTTGGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGa < 2:2048440/74‑1 (MQ=255) cTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAg < 2:2714117/76‑1 (MQ=255) ttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgcgc < 1:2479036/76‑1 (MQ=255) ttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgcgc > 2:2334227/1‑76 (MQ=255) ttAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAgcgc > 2:2342332/1‑76 (MQ=255) aaCGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCgg < 1:4766621/76‑1 (MQ=255) ggCTTTGATGTATTGCGGACAAAAAGCCGATGACGGAAATATCTTCAGAGACTG‑GCAGCCCGCTGTCAGCGCGGTa > 1:4378702/2‑76 (MQ=255) cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTa > 2:498145/1‑76 (MQ=255) cGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCCTCCAGCGCggga > 2:4765519/1‑74 (MQ=255) gCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTaa > 1:4628676/1‑76 (MQ=255) gCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTaa > 2:2944793/1‑76 (MQ=255) cTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTaaa < 2:2771611/76‑1 (MQ=255) tttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAg < 1:714757/76‑1 (MQ=255) tttGATGTATGGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTTC‑TCGCCCGCTTCGAGCGCGGTAAAg < 2:1036304/76‑1 (MQ=255) ttGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAgg > 1:3626663/1‑76 (MQ=255) tGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGACTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGc > 1:2734578/1‑76 (MQ=255) aTGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCtt > 2:3463161/1‑76 (MQ=255) aTGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCtt > 2:4128044/1‑76 (MQ=255) aTGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCtt > 2:2261844/1‑76 (MQ=255) tGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTc > 2:1006306/1‑76 (MQ=255) tATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCgg > 2:2571087/1‑76 (MQ=255) ttGCGGACCAAAAGGCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 1:2106787/76‑1 (MQ=255) ttGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTc < 1:4837710/76‑1 (MQ=255) gtGCGGACCAAAAGCCGATGACGGAAATATTTCCAGCGCCTGC‑CCGCCCGCTCCGATCCCGGTAAAGGCTTCTGTc > 2:4636786/2‑76 (MQ=255) cGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGcc < 1:3402888/76‑1 (MQ=255) cGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGGAAAGGCTTAGGTCGcc > 1:1019063/1‑76 (MQ=255) ngACCAAAAGCCGATGACGGAAATATTTTCAGCGACTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGACCCCg > 2:4427008/2‑76 (MQ=255) ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGCGCGCGGTAAAGGCTTCGGTCGCCg > 1:1388016/1‑76 (MQ=255) ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCg < 2:1323760/76‑1 (MQ=255) ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCg < 2:1943507/76‑1 (MQ=255) ggACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGCAAAGGCTTCGGTCGACg > 1:1434389/1‑76 (MQ=255) gACCAAAAGCCTATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGt < 1:1474279/76‑1 (MQ=255) gACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGt > 2:2483083/1‑76 (MQ=255) gACAAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGt < 1:3621777/76‑1 (MQ=255) acaaaaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTc < 1:3363391/73‑1 (MQ=255) acaaaaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTc < 2:3549398/73‑1 (MQ=255) aCCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTc < 2:3859888/76‑1 (MQ=255) aCCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCCTCGAGCGCGGTAAAGGCTTCGGTCGCCCTc > 2:1204596/1‑76 (MQ=255) ccAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcg > 2:3276416/1‑76 (MQ=255) ccAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcg > 1:3193936/1‑76 (MQ=255) cAAAAGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgc < 2:2764521/76‑1 (MQ=255) aaaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTcgcg > 2:1946200/1‑76 (MQ=255) acaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCGTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCgcgc < 1:2420586/74‑1 (MQ=255) aaaGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCgcgc > 2:1285606/1‑76 (MQ=255) aGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAg < 2:3363561/76‑1 (MQ=255) aGCCGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAg > 1:3267550/1‑76 (MQ=255) gcGAGGAGGGAAATATTTTCAGCGCCGGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGcc < 2:384929/75‑1 (MQ=255) ccGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGcc < 1:268362/76‑1 (MQ=255) cGATGGCGGAAATATTTTCGGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCg < 2:4594863/76‑1 (MQ=255) cGATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCg > 1:1256245/1‑76 (MQ=255) gATGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCgg > 1:2036018/1‑76 (MQ=255) aTGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCCGCCggg > 2:2612519/1‑76 (MQ=255) tGACGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCgggg < 1:1639178/76‑1 (MQ=255) aCGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCa < 1:1733953/76‑1 (MQ=255) aCGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCa < 1:34757/76‑1 (MQ=255) aCGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCa > 2:4638848/1‑76 (MQ=255) aCGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCa < 2:4130360/76‑1 (MQ=255) aCGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCa > 2:3317900/1‑76 (MQ=255) cGGAAATATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAg > 2:3780127/1‑76 (MQ=255) aaaTATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACg < 1:4027008/76‑1 (MQ=255) aaaTATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACg > 2:4372402/1‑76 (MQ=255) aaaTATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACg < 2:1570553/76‑1 (MQ=255) aaaTATTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACg > 1:3214332/1‑76 (MQ=255) atatTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGt > 2:3743124/1‑76 (MQ=255) tatTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACgggc > 2:3342397/1‑74 (MQ=255) atTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGGAGACGGGCa > 2:1894408/1‑76 (MQ=255) atTTTCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCa > 1:1713843/1‑76 (MQ=255) ttttCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCAt < 1:3916618/76‑1 (MQ=255) ttttCAGCGCCCGC‑GCGCCCGCTTCGAGCGCGGTAAAGGATTCGGTCGCCGTCGCGCAGCCGGGGCCGAACGTCAt > 1:564102/1‑76 (MQ=255) tttgCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCAt < 2:788378/76‑1 (MQ=255) tttCGGCGCCGGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATg < 2:4078039/76‑1 (MQ=255) tgaGCGCCGGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGcc < 2:4007278/74‑1 (MQ=255) tCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATccc > 2:4276386/1‑76 (MQ=255) tCAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGcc > 2:2542064/1‑76 (MQ=255) cAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCg < 1:2212455/76‑1 (MQ=255) cAGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCg < 2:2040242/76‑1 (MQ=255) aGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGccct > 2:1230962/1‑74 (MQ=255) aGCGCCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGt < 1:4638848/76‑1 (MQ=255) gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCCTGCCGTa > 1:4844927/1‑76 (MQ=255) gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa > 1:2824032/1‑76 (MQ=255) gcgcCTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTa < 1:2304788/76‑1 (MQ=255) ccTGC‑GCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTGATGCCGTAGcc > 1:1933867/1‑76 (MQ=255) | GATGGCAATACCGCTTTTAACGCTTTGATGTATTGCGGACCAAAAGCCGATGACGGAAATATTTTCAGCGCCTGCGGCGCCCGCTTCGAGCGCGGTAAAGGCTTCGGTCGCCGTCGCGCAGCCGGGGCAGACGGTCATGCCGTAGCCCACC > NC_000913/3870800‑3870950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |