BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,881,483	Δ1 bp	intergenic (‑126/‑482)	dnaA ← / → rpmH	DnaA/50S ribosomal subunit protein L34

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,881,483	0	G	.	100.0%	483.4 / NA	106	intergenic (‑126/‑482)	dnaA/rpmH	DnaA/50S ribosomal subunit protein L34
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (42/64); total (42/64)

Only 100 of 106 total aligned reads displayed.

TTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCA  >  NC_000913/3881412‑3881553

ttgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAg                                                                   >  1:2293012/1‑76 (MQ=255)

 tgttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGa                                                                  >  1:131074/1‑76 (MQ=255)

  gttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGAt                                                                 <  1:210960/76‑1 (MQ=255)

  gttgACGTACGGCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGAt                                                                 <  1:500349/76‑1 (MQ=255)

   ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc                                                                >  1:2384460/1‑76 (MQ=255)

   ttgACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATc                                                                >  1:3812798/1‑76 (MQ=255)

     gccgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt                                                              <  1:1086026/74‑1 (MQ=255)

     gACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCt                                                              >  2:1827298/1‑76 (MQ=255)

     gACGTACGCCTAAACGCCCCTGCTTGAGTGTGCCGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGCTCCt                                                              <  1:120627/76‑1 (MQ=255)

      acgtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTg                                                             <  1:1827299/76‑1 (MQ=255)

        gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCa                                                           >  2:1011611/1‑76 (MQ=255)

        gtacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGCTATATGCCCCA‑TCAAGATCCTGCa                                                           >  2:4703245/1‑76 (MQ=255)

         tacgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaa                                                          <  2:1697807/76‑1 (MQ=255)

          acgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaa                                                         <  2:2458580/76‑1 (MQ=255)

           cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaaa                                                        >  1:919171/1‑76 (MQ=255)

           cgtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCaaaa                                                        <  2:2235176/76‑1 (MQ=255)

            gtCGAAAAGGCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc                                                       <  2:480940/76‑1 (MQ=255)

            gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc                                                       <  1:488753/76‑1 (MQ=255)

            gtCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAAc                                                       >  2:1852127/1‑76 (MQ=255)

             tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg                                                      <  1:1638737/76‑1 (MQ=255)

             tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg                                                      <  1:3935336/76‑1 (MQ=255)

             tCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACg                                                      <  1:3925316/76‑1 (MQ=255)

              ggAAAAGGCCCTGCTTGAGGGGNNCGCACGAACCGCTGTCNGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa                                                     <  2:4403576/75‑1 (MQ=255)

              cGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGa                                                     <  2:1490586/76‑1 (MQ=255)

               gAAAAGGCCCTGCGTGAGGGGGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt                                                    <  2:277574/76‑1 (MQ=255)

               gAAAAGACCCTGCTTGAGGGTGACGCCCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt                                                    <  1:2684313/76‑1 (MQ=255)

               gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAATATCCTGCAAAACGAt                                                    >  1:4400476/1‑76 (MQ=255)

               gAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAt                                                    <  2:578308/76‑1 (MQ=255)

                aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATc                                                   <  1:3401409/76‑1 (MQ=255)

                aaaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATc                                                   >  2:2189667/1‑76 (MQ=255)

                 aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg                                                  <  2:3184908/76‑1 (MQ=255)

                 aaaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg                                                  <  1:2450282/76‑1 (MQ=255)

                 aaaGACCCTGCTTGAGGGTGACGCACGAACCGCAGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg                                                  <  1:479957/76‑1 (MQ=255)

                 aaaGACACGGCTTGAGGTTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCg                                                  <  1:2463164/76‑1 (MQ=255)

                  aaGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCgg                                                 <  1:480280/76‑1 (MQ=255)

                   aGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCggg                                                <  2:1086440/76‑1 (MQ=255)

                     aCCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGAc                                              <  1:1852128/76‑1 (MQ=255)

                      cccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGAcc                                             <  1:4584920/76‑1 (MQ=255)

                       ccTGCTTGAGGGTGACGCCCGACCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGTGACcg                                            <  2:4041245/76‑1 (MQ=255)

                       ccTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg                                            >  2:3846433/1‑76 (MQ=255)

                         tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg                                          <  2:901644/76‑1 (MQ=255)

                         tGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcgcg                                          <  1:2946864/76‑1 (MQ=255)

                          gCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCgg                                         >  2:1527084/1‑76 (MQ=255)

                           cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa                                        >  1:2648114/1‑76 (MQ=255)

                           cTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGa                                        <  2:315848/76‑1 (MQ=255)

                            ttGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGAt                                       <  1:3065821/76‑1 (MQ=255)

                               ggggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt                                    <  2:1857642/75‑1 (MQ=255)

                               aGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCAt                                    >  1:2097669/1‑76 (MQ=255)

                                gggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATa                                   <  2:2724371/76‑1 (MQ=255)

                                gggTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGAGCATa                                   >  1:602284/1‑76 (MQ=255)

                                  gTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGc                                 >  2:3216971/1‑76 (MQ=255)

                                   tGACGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGcc                                >  1:4065877/1‑76 (MQ=255)

                                      cGCACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTaa                             >  2:3046696/1‑76 (MQ=255)

                                        cACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGGCCGCGGATCATAGCCTAAAc                           >  2:2581314/1‑76 (MQ=255)

                                        cACGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAAc                           >  1:4317114/1‑76 (MQ=255)

                                         aCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                          <  2:3450285/76‑1 (MQ=255)

                                         aCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                          >  1:3510513/1‑76 (MQ=255)

                                         aCGAACCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACt                          >  2:1976038/1‑76 (MQ=255)

                                           ggaCCGGTGTCTGCGGTGAGATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgc                        <  2:216178/74‑1 (MQ=255)

                                            aaCCGGTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg                       <  1:3825409/76‑1 (MQ=255)

                                            aaCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg                       <  2:1910904/76‑1 (MQ=255)

                                            aaCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcg                       <  1:485956/76‑1 (MQ=255)

                                             aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc                      <  2:1656289/76‑1 (MQ=255)

                                             aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc                      <  2:2384459/76‑1 (MQ=255)

                                             aCCGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTgcgc                      >  1:2631674/1‑76 (MQ=255)

                                              ccGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCa                     <  2:4619766/76‑1 (MQ=255)

                                              ccGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCa                     >  2:4680366/1‑76 (MQ=255)

                                               cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCaa                    <  1:3859407/76‑1 (MQ=255)

                                               cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATAATAGCCTAAACTGCGCaa                    >  1:2508127/1‑76 (MQ=255)

                                               cGCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGAGCGGGACCGCGGATCATAGCCTAAAATGCGCaa                    >  1:333057/1‑76 (MQ=255)

                                                gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag                   <  1:3580568/76‑1 (MQ=255)

                                                gCTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAag                   >  1:4781187/1‑76 (MQ=255)

                                                 cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga                  <  2:3302500/76‑1 (MQ=255)

                                                 cTGTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAaga                  <  1:4598263/76‑1 (MQ=255)

                                                  ggTCTGCGGTTATAGGCCAGA‑ACAAGATCCCGCAAAAAGAACGGGACAGCGGATCATAGCCTAAACTGCGCAagac                 >  1:366421/2‑75 (MQ=255)

                                                   gTCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAgaga                >  2:4423030/1‑76 (MQ=255)

                                                    tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt               <  1:601735/76‑1 (MQ=255)

                                                    tCTGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAt               <  2:4183033/76‑1 (MQ=255)

                                                      tggggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct             <  2:4692267/73‑1 (MQ=255)

                                                      tGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct             >  1:3232754/1‑76 (MQ=255)

                                                      tGCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtct             <  1:4298963/76‑1 (MQ=255)

                                                       gCGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtctt            >  1:490013/1‑76 (MQ=255)

                                                        gggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc           <  2:3604664/75‑1 (MQ=255)

                                                        cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg                                            <  1:478504/43‑1 (MQ=38)

                                                        cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACcg                                            >  2:478504/1‑43 (MQ=38)

                                                        cGGTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttc           >  1:815156/1‑76 (MQ=255)

                                                         ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct          >  2:2589474/1‑76 (MQ=255)

                                                         ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct          <  2:2741660/76‑1 (MQ=255)

                                                         ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct          <  2:1661274/76‑1 (MQ=255)

                                                         ggTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGAtcttct          >  1:735467/1‑76 (MQ=255)

                                                          gtgatatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg         <  2:724435/73‑1 (MQ=255)

                                                          gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg         <  2:4812895/76‑1 (MQ=255)

                                                          gTTATATGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTg         >  2:422471/1‑76 (MQ=255)

                                                             atatGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGttt      >  1:3804531/1‑76 (MQ=255)

                                                               atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct    <  1:794650/76‑1 (MQ=255)

                                                               atGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtct    <  2:4514806/76‑1 (MQ=255)

                                                                tGCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTtctc   <  2:3032468/76‑1 (MQ=255)

                                                                 gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCCAGAGCTCTTCTGTTtcccc  >  2:53184/1‑73 (MQ=255)

                                                                 gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca  <  2:3343389/76‑1 (MQ=255)

                                                                 gCCCGA‑TCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTca  >  2:3598062/1‑76 (MQ=255)

TTGTTGACGTACGTCGAAAAGACCCTGCTTGAGGGTGACGCACGAACCGCTGTCTGCGGTTATATGCCCGAGTCAAGATCCTGCAAAACGATCGGGACCGCGGATCATAGCCTAAACTGCGCAAGAGATCTTCTGTTTCTCA  >  NC_000913/3881412‑3881553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`