BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,039,960	Δ1 bp	intergenic (+42/‑36)	yihD → / → yihE	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,039,959	0	A	.	100.0%	441.4 / NA	96	intergenic (+41/‑37)	yihD/yihE	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (48/48); total (48/48)

Only 100 of 104 total aligned reads displayed.

GCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACA  >  NC_000913/4039885‑4040030

gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATat                                                                        >  1:4298333/1‑75 (MQ=255)

gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATat                                                                        <  1:3656460/76‑2 (MQ=255)

gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATat                                                                        >  1:3014260/1‑75 (MQ=255)

gcTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATat                                                                        >  1:395855/1‑75 (MQ=255)

 cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAGGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatc                                                                       <  1:3839807/76‑3 (MQ=255)

 cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatc                                                                       >  2:1016063/1‑74 (MQ=255)

 cTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatc                                                                       >  1:1685894/1‑74 (MQ=255)

  tGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATatcc                                                                      >  1:3427878/1‑73 (MQ=255)

     tACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTc                                                                  <  2:2204755/76‑1 (MQ=255)

     tACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTc                                                                  >  2:2962113/1‑76 (MQ=255)

     tACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTc                                                                  <  1:1044327/76‑1 (MQ=255)

     tACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTc                                                                  <  2:4591041/76‑1 (MQ=255)

      aCGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCg                                                                 <  2:2840475/76‑1 (MQ=255)

       cgcgCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGt                                                                <  1:1537777/76‑1 (MQ=255)

       cgcgCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGt                                                                >  1:1877627/1‑76 (MQ=255)

           cTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCAtt                                                            >  2:2514625/1‑76 (MQ=255)

            tCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTc                                                           <  2:1981075/76‑1 (MQ=255)

            tCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTc                                                           >  1:3662212/1‑76 (MQ=255)

             cgcgGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCg                                                          >  1:185214/1‑76 (MQ=255)

              gcggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGt                                                         >  2:3915650/1‑76 (MQ=255)

              gcggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGt                                                         >  1:3940662/1‑76 (MQ=255)

               cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTa                                                        >  2:1072247/1‑76 (MQ=255)

               cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTa                                                        >  2:1044868/1‑76 (MQ=255)

               cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTa                                                        >  2:2883179/1‑76 (MQ=255)

               cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTa                                                        >  1:281429/1‑76 (MQ=255)

               cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTa                                                        >  2:1798641/1‑76 (MQ=255)

               cggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ACCCTTCGTCATTCGTa                                                        <  2:4162254/76‑1 (MQ=255)

                ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTaa                                                       >  2:1540515/1‑76 (MQ=255)

                ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTaa                                                       <  2:4641930/76‑1 (MQ=255)

                ggcgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTaa                                                       >  1:2660661/1‑76 (MQ=255)

                  cgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAAtt                                                     >  1:326759/1‑75 (MQ=255)

                  cgTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATg                                                     <  2:1776101/76‑1 (MQ=255)

                   gTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGt                                                    <  2:1997652/76‑1 (MQ=255)

                    tAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGtt                                                   <  2:2799924/76‑1 (MQ=255)

                    tAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATAGTGAAATGAT‑ATCCTTCGTCATTCGTAATGtt                                                   >  1:4266557/1‑76 (MQ=255)

                     aaTTAAAGAGTAAAAGCTTGTCAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGttt                                                  <  2:1283032/76‑1 (MQ=255)

                     aaTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGttt                                                  <  1:1129656/76‑1 (MQ=255)

                      aTTACAGAGTAAAAGCTTGTAAGCGGCGCCACCACACTCATCGTGACATGAT‑ATCCTTCGTCATTCGTACTGtttt                                                 >  2:3002332/1‑76 (MQ=255)

                      aTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGtttt                                                 >  2:2506194/1‑76 (MQ=255)

                      aTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGtttt                                                 <  1:3260377/76‑1 (MQ=255)

                      aTTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGtttt                                                 >  2:2992231/1‑76 (MQ=255)

                         aaaGCGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGCAATTCTACATGTTTTCCg                                              >  2:3637655/1‑76 (MQ=255)

                         aaaGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCg                                              >  2:3633301/1‑76 (MQ=255)

                          aaGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCgg                                             <  2:1077360/76‑1 (MQ=255)

                          aaGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCgg                                             >  1:3604308/1‑76 (MQ=255)

                          aaGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGCTTTCCgg                                             >  1:158452/1‑76 (MQ=255)

                            gagTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgat                                           <  1:4744278/76‑1 (MQ=255)

                              gTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatga                                         <  1:3915650/76‑1 (MQ=255)

                              gTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatga                                         <  1:1589570/76‑1 (MQ=255)

                               tAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGgatgat                                        <  2:3239526/76‑1 (MQ=255)

                               gaaaaGCGTGTGAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTGTTCCGgatgat                                        <  2:193588/75‑1 (MQ=255)

                                  aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATggg                                     >  2:2803965/1‑76 (MQ=255)

                                  aaGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATggg                                     >  1:111525/1‑76 (MQ=255)

                                   aGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATgggg                                    >  2:134351/1‑75 (MQ=255)

                                   aGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGa                                    <  1:3673281/76‑1 (MQ=255)

                                   aGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGa                                    >  1:4399400/1‑76 (MQ=255)

                                    gCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGAt                                   <  2:809579/76‑1 (MQ=255)

                                     ctggTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATg                                  <  2:4322040/73‑1 (MQ=255)

                                     cTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATg                                  <  2:2400671/76‑1 (MQ=255)

                                     cTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATg                                  <  2:2838886/76‑1 (MQ=255)

                                     cTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATg                                  <  2:1964662/76‑1 (MQ=255)

                                      ttGTAATCGGCGCCACCAAAAGCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGa                                 <  2:2193763/76‑1 (MQ=255)

                                      ttGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGa                                 <  2:3081399/76‑1 (MQ=255)

                                       tGTAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGaa                                <  1:1248409/76‑1 (MQ=255)

                                         tAAGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATa                              <  1:3026223/76‑1 (MQ=255)

                                          aaGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATaa                             <  1:3273012/76‑1 (MQ=255)

                                          aaGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATaa                             >  2:3572745/1‑76 (MQ=255)

                                          aaGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATaa                             <  2:2056384/76‑1 (MQ=255)

                                           aGCGGCGCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAAc                            <  1:737849/76‑1 (MQ=255)

                                              ggcgCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgc                         >  1:61815/1‑76 (MQ=255)

                                              ggcgCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgc                         >  1:2620304/1‑76 (MQ=255)

                                              ggcgCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgc                         <  1:271431/76‑1 (MQ=255)

                                              ggcgCCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTAGTGATGTTTTCCGGATGAGGTGATCAATAAcctc                         >  1:95918/1‑73 (MQ=255)

                                                cgcCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgcgc                       >  1:2168166/1‑76 (MQ=255)

                                                cgcCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgcgc                       >  2:3761025/1‑76 (MQ=255)

                                                cgcCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAgcgc                       >  1:3138824/1‑76 (MQ=255)

                                                 gcCACCAAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCt                      >  1:451293/1‑76 (MQ=255)

                                                   caccaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                    <  1:1134157/76‑1 (MQ=255)

                                                   caccaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                    <  1:2880199/76‑1 (MQ=255)

                                                   caccaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCttt                    <  2:3671309/76‑1 (MQ=255)

                                                    accaAAATCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCtttt                   >  2:1487624/1‑76 (MQ=255)

                                                       aaaaTCATCGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACt                <  2:2794308/76‑1 (MQ=255)

                                                        aaaTCATCGTGAAATGAT‑ATCCTGCGGCATTCGGAATGGGTGCCGGATGAGGGGATGAATAACAGAGATTGTACtg               >  1:1429529/1‑75 (MQ=255)

                                                          atcatcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTc             >  1:1275808/1‑76 (MQ=255)

                                                           tcatcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTcc            <  2:4252253/76‑1 (MQ=255)

                                                           tcatcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTcc            <  1:1414595/76‑1 (MQ=255)

                                                            catcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCa           >  2:843767/1‑76 (MQ=255)

                                                             atcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAg          <  1:2605149/76‑1 (MQ=255)

                                                             atcGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAg          >  1:2245458/1‑76 (MQ=255)

                                                               cGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGac        >  1:1162334/1‑76 (MQ=255)

                                                               cGTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGac        >  1:4817035/1‑76 (MQ=255)

                                                               cGTGAAATGAT‑AGCCTTCGTCATTCGTAATGTTTTCCGGATGATGGTAGTCATACAAGCGCTTTTACGTTCCAgcg        >  1:1167736/1‑74 (MQ=255)

                                                                gTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGaca       <  2:2895969/76‑1 (MQ=255)

                                                                gTGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGaca       <  2:964708/76‑1 (MQ=255)

                                                                 tGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGacac      <  2:3172430/76‑1 (MQ=255)

                                                                 tGAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGacac      <  1:2956508/76‑1 (MQ=255)

                                                                  gAAATGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACt     >  1:244431/1‑76 (MQ=255)

                                                                    aaTGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTac   <  2:326759/76‑1 (MQ=255)

                                                                    aaTGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTac   <  1:3003822/76‑1 (MQ=255)

                                                                    aaTGAT‑ATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTac   >  1:4348042/1‑76 (MQ=255)

GCTGTTACGCGCTCGCGGCGTAATTAAAGAGTAAAAGCTTGTAAGCGGCGCCACCAAAATCATCGTGAAATGATAATCCTTCGTCATTCGTAATGTTTTCCGGATGATGGGATGAATAACAGCGCTTTTACTTTCCAGACACTACA  >  NC_000913/4039885‑4040030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`