| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,236,177 | Δ1 bp | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,236,176 | 0 | G | . | 96.6% | 497.2 / 4.0 | 118 | intergenic (+238/‑46) | ygjR/ygjT | hypothetical protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base G (1/3); new base . (72/42); total (73/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.54e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 137 total aligned reads displayed.
ACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCT > NC_000913/3236101‑3236247 | aCGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTg < 2:2772428/76‑1 (MQ=255) cGCAGACTTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTga < 2:4381272/76‑2 (MQ=255) cGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgg > 1:534793/1‑76 (MQ=255) cGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTga > 1:2406833/1‑75 (MQ=255) cGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTga < 1:4643961/76‑2 (MQ=255) gCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgac < 1:3062867/76‑3 (MQ=255) gCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgac > 1:1866191/1‑74 (MQ=255) gCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgac > 1:3698308/1‑74 (MQ=255) cAGCCGTATTCTTTTTTTGTTGTAAGTGAGACCTTGCCGGCAGGCGAGGTCTATGCATACAACGCAGCGGCTgacg < 1:1356446/76‑4 (MQ=255) cAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAATCAGCGGCTgacg > 1:1258403/1‑73 (MQ=255) cAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgacg > 1:1111640/1‑73 (MQ=255) cAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgacg < 2:422540/76‑4 (MQ=255) cAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgacg < 2:3348054/76‑4 (MQ=255) cAGACGTATTCCTTTTTTGTGTTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTgacg < 2:440887/76‑4 (MQ=255) aGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTggcgt > 2:1976551/1‑73 (MQ=255) aCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCt > 1:2282224/1‑76 (MQ=255) cGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCtt < 2:2871221/76‑1 (MQ=255) cGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCtt < 2:648112/76‑1 (MQ=255) gTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTc > 1:3740219/1‑76 (MQ=255) gTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTc > 2:3829232/1‑76 (MQ=255) tATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTcc > 1:506906/1‑76 (MQ=255) aTTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTACg > 1:2099372/1‑76 (MQ=255) ttCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCgg > 1:659464/1‑75 (MQ=255) ttCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGa < 2:3164140/76‑1 (MQ=255) ttCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGa < 2:3198503/76‑1 (MQ=255) tCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGAc > 1:4458696/1‑76 (MQ=255) tCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGAc < 1:2665118/76‑1 (MQ=255) tCCTTTTGTGTTGTAAGTGAGACGTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGAc < 2:504149/76‑1 (MQ=255) ccTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACg > 1:3974241/1‑76 (MQ=255) cTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGt < 2:3640707/76‑1 (MQ=255) cTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGt < 2:2249601/76‑1 (MQ=255) cTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCACAAAAAGCAGCGGCTGG‑CGTCTTCCGACGt > 2:236983/1‑76 (MQ=255) ttttttGTTGTAAGTGAGACCTTGTCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGtt < 1:1025913/76‑1 (MQ=255) tttGTTGTAAGTGAGACCTTGCCGGAACGCGAGGTCTATGCATCAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGc > 1:1102979/1‑76 (MQ=255) ttgttgTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGcc < 2:4024338/76‑1 (MQ=255) gttgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGt > 1:3746706/1‑76 (MQ=255) gttgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGt > 1:2293560/1‑76 (MQ=255) tgtAAGTGAGACCTTGCCGGAAGGCGAGGTCTATTCATAAAAAGCAGCGGCT‑GACTTCTTCCGACGTTGGCCGttt < 2:4602213/76‑1 (MQ=255) tAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTTCGACg > 2:4563197/1‑64 (MQ=255) tAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTTCGACg < 1:4563197/64‑1 (MQ=255) tAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttttt < 1:3944108/76‑1 (MQ=255) aaGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGtttttt > 1:2386343/1‑76 (MQ=255) aGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttttttt < 2:3135836/76‑1 (MQ=255) aGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGttttttt > 2:1559276/1‑76 (MQ=255) gaggCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtg < 1:335757/76‑1 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTTtg > 1:1172983/1‑76 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTTtg > 1:2039270/1‑76 (MQ=255) gagaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGGTTTTTTAtg > 2:4269472/1‑76 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtgtg > 1:4336962/1‑76 (MQ=255) gaCCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTAtgtg > 2:3659767/1‑76 (MQ=255) ccTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTa > 1:2795849/1‑76 (MQ=255) cTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCCACGTTGGCCGTTTTTTTATGTGTaa > 2:1621766/1‑76 (MQ=255) ttGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAg > 1:3870075/1‑76 (MQ=255) ttGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTACGACGTTGGCCGTTTTTTTATGTGTAAg > 1:372822/1‑76 (MQ=255) tGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAgg < 1:3236100/76‑1 (MQ=255) gCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGa > 1:3449783/1‑76 (MQ=255) gCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGGTTTTTTATGTGTAAGGa > 1:830176/1‑76 (MQ=255) ccGGAAGGCGAGGGCTATGCAGAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGGTGTTTTATGTGTTAggga > 1:2410605/1‑74 (MQ=255) cGGGAGGGGAGGGTTATGGAGAAAAAGGAGCGGC‑GGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGatc < 2:36237/76‑3 (MQ=255) cGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTTAGGAAc > 2:3173123/1‑76 (MQ=255) cGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAAc > 1:2069979/1‑76 (MQ=255) cGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAAc < 1:1746211/76‑1 (MQ=255) cGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAAc > 2:1456789/1‑76 (MQ=255) ggAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACt < 2:1371690/76‑1 (MQ=255) ggAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTCTTTATGTGTAAGGAACt > 2:3509418/1‑76 (MQ=255) gAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGATGTTGGCCGTTTTTTTATGTGTAAGGAACtt < 2:1989044/76‑1 (MQ=255) gAAGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACtt > 2:1995352/1‑76 (MQ=255) aaGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTc > 2:3264835/1‑76 (MQ=255) aaGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTc < 2:3208134/76‑1 (MQ=255) aGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCt < 2:2086915/76‑1 (MQ=255) aGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCt > 2:3692231/1‑76 (MQ=255) aGGCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCt > 1:3026009/1‑76 (MQ=255) ggCGAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTa > 1:300241/1‑76 (MQ=255) gAGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGa > 2:3094578/1‑76 (MQ=255) aGGTGTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTTGCCGTTTTTTTATGTGTAAGGAACTTCTATGaa < 1:3570419/76‑1 (MQ=255) aGGTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGaa < 1:404350/76‑1 (MQ=255) gTCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATa > 2:2401391/1‑76 (MQ=255) tCTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATAc < 1:1895048/76‑1 (MQ=255) cTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACt < 1:1657281/76‑1 (MQ=255) cTATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACt > 1:3875189/1‑76 (MQ=255) cTATACATAAAAAACAGCGGC‑GTACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACt < 1:1695934/76‑1 (MQ=255) tATGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTg < 2:3889080/76‑1 (MQ=255) aTGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGt > 2:2918855/1‑76 (MQ=255) tGCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTTTGTGTAAGGAAATTCTATGAATACTGTc > 2:1648185/1‑76 (MQ=255) gCATAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTca < 2:1157805/76‑2 (MQ=255) naTAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTACGGACCTTCTATGACTACTTTCgc > 2:2303886/2‑75 (MQ=255) aTAAAAAGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGc < 2:3658930/76‑1 (MQ=255) aaaaaGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGACTACTGTCGGCAc > 1:4552212/1‑76 (MQ=255) aaaGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGc > 2:3980852/1‑76 (MQ=255) aaGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGcc < 2:4058053/76‑1 (MQ=255) aaGCAGCGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGcc > 1:218391/1‑76 (MQ=255) gcagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGt > 2:4608379/1‑76 (MQ=255) cagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTCTGAATACTGTCGGCACGCCggt > 2:4095472/1‑74 (MQ=255) cagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGtt < 1:2042427/76‑1 (MQ=255) cagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGtt < 1:2477370/76‑1 (MQ=255) cagcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGtt < 1:4447553/76‑1 (MQ=255) cagcGGC‑GGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGtt < 2:1221168/76‑1 (MQ=255) agcGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTg > 1:3654861/1‑76 (MQ=255) cGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCt < 1:1520125/76‑1 (MQ=255) cGGCT‑GACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCt > 1:3580212/1‑76 (MQ=255) | ACGCAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCGTTGCT > NC_000913/3236101‑3236247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |