| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,236,758 | Δ1 bp | coding (537/966 nt) | ygjT → | putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,236,757 | 0 | T | . | 98.9% | 799.5 / ‑2.3 | 178 | coding (536/966 nt) | ygjT | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (92/84); minor base C (1/1); total (93/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 183 total aligned reads displayed.
CGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑G‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCC > NC_000913/3236683‑3236827 | gCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGGtca > 1:4046648/1‑74 (MQ=255) cGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGGtcat > 1:3627237/1‑73 (MQ=255) cGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGGtcat > 1:4613955/1‑73 (MQ=255) cGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑G‑CTGCTGGTGCGCTGGCTACGCGGtcat > 1:1409352/1‑73 (MQ=255) tGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCAttt > 1:3715579/1‑76 (MQ=255) gAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTg > 2:1669756/1‑76 (MQ=255) gAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTg < 1:2746769/76‑1 (MQ=255) aaGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgc > 1:2041753/1‑76 (MQ=255) aaGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgc < 1:3593690/76‑1 (MQ=255) aGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCCG‑TCATTTgcg > 2:3131142/1‑76 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc > 1:1753838/1‑76 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc < 1:210152/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa < 1:3771932/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa < 1:2651306/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑GCATTTGAGCa > 1:4186368/1‑76 (MQ=255) gcgcTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGa > 2:2877480/1‑76 (MQ=255) gcgcTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGa < 1:1051715/76‑1 (MQ=255) cgcTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAc < 1:3206639/76‑1 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc > 1:4641139/1‑76 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc > 2:1884240/1‑76 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCACTTGCGCATGAcc > 2:1541766/1‑76 (MQ=255) tCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGa > 1:2886789/1‑76 (MQ=255) gCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca > 1:2319721/1‑76 (MQ=255) gCCCATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca < 1:1069716/76‑1 (MQ=255) ccccATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca < 1:2163579/75‑1 (MQ=255) ccccATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca < 1:806714/75‑1 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACAcc > 2:3695548/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACAcc > 1:2694674/1‑76 (MQ=255) ctggAAGATGAAGCGGGCGTGGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCa < 2:4563299/73‑1 (MQ=255) cATGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCa < 1:4405059/76‑1 (MQ=255) aTGAAGATGGATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑GCATTTGCGCCTGACCGACACCAt > 1:1301268/1‑76 (MQ=255) aTGAAGATGAATCAGGCATTTGCGACAA‑GCC‑GCTGGGGCGCTGGCTACGCGG‑TCATTTGAGCATGACCGACACCAt > 1:3654379/1‑76 (MQ=255) aTGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCCGGCTACGCGG‑ACATATGCGCCTGACGCGCACCAt > 1:1773412/1‑76 (MQ=255) tGAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCCACACCATc > 2:4419560/1‑76 (MQ=255) ggAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATc < 2:4336260/75‑1 (MQ=255) gAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGCCACCCTcc > 2:4744614/1‑75 (MQ=255) gAAGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg < 1:4172853/76‑1 (MQ=255) gAAGATGAATCAGGCATTGGCGAAAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg < 1:824565/76‑1 (MQ=255) aaGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGa < 1:3380391/76‑1 (MQ=255) aaGATGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGa > 1:3804116/1‑76 (MQ=255) gggtGAAGCAGGGATGGGGGACAA‑GCC‑GGTGGTGGGGTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 2:23224/73‑1 (MQ=255) aGATGAATCAGGCATGGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:3015704/76‑1 (MQ=255) aGATGAATCAGGCATGGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:3113293/76‑1 (MQ=255) gATGAATCAGGCATGGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACa < 2:3022571/76‑1 (MQ=255) aTGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACaa < 1:471252/76‑1 (MQ=255) tGAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAAc < 1:2370795/76‑1 (MQ=255) taaTCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACg < 1:1594159/75‑1 (MQ=255) gAATCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACg < 1:2747696/76‑1 (MQ=255) aTCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAg < 1:4374085/76‑1 (MQ=255) aTCAGGCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAg < 2:2081503/76‑1 (MQ=255) gCATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACCAGCAttt > 1:394989/1‑76 (MQ=255) ctttGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTc < 1:1844371/74‑1 (MQ=255) cATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTc > 1:2793724/1‑76 (MQ=255) cATTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTc > 2:1583476/1‑76 (MQ=255) aTTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt > 2:3155489/1‑76 (MQ=255) aTTGGCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt < 1:3062883/76‑1 (MQ=255) tgggCGACAAGG‑C‑GGTGGTGGGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCtt < 2:280294/74‑1 (MQ=255) gtGGCGAAAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCtt < 2:83726/75‑1 (MQ=255) gCGACAC‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtgt < 1:4158873/76‑1 (MQ=255) gCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGCCACCATCCCCAACGCGCATTTTTTtgt > 2:4553221/1‑76 (MQ=255) gCGACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCCTCGCCAACGAGCCTtttttttt > 2:72985/1‑74 (MQ=255) gACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc < 1:1725908/76‑1 (MQ=255) gACAA‑GCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTCTGc > 1:4791413/1‑76 (MQ=255) agcc‑gcTGGTGCGCGGGCTGCGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTaa < 2:4673976/73‑1 (MQ=255) gcc‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAg < 1:3479469/74‑1 (MQ=255) cc‑gcTTGTGCTCTGGCTCCGC‑GCTCATTTGCGCATGTCCGACACCATCGACAACGAGCATTTCTATGTGCGTAAGa < 1:2781897/75‑1 (MQ=255) cc‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGa < 2:3670100/75‑1 (MQ=255) cc‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGa > 1:3088154/2‑76 (MQ=255) c‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGaa > 2:2426506/1‑76 (MQ=255) c‑gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGaa > 1:236590/1‑76 (MQ=255) gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAAt < 2:2770267/76‑1 (MQ=255) gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAAt > 2:4706750/1‑76 (MQ=255) gcTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAAt > 1:2428321/1‑76 (MQ=255) tGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATgg > 2:949368/1‑76 (MQ=255) tGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATgg > 2:2237621/1‑76 (MQ=255) gTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGAt < 2:3077350/76‑1 (MQ=255) gcgcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTg > 2:4802829/1‑76 (MQ=255) gcgcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTg > 1:2480539/1‑76 (MQ=255) gcgcCGGCCACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTg < 1:1021648/76‑1 (MQ=255) cgcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGc < 1:545574/76‑1 (MQ=255) cgcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGc < 1:1468813/76‑1 (MQ=255) gcTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTgtc > 2:3779653/1‑74 (MQ=255) cTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTg > 2:444095/1‑76 (MQ=255) cTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTg > 2:574504/1‑76 (MQ=255) cTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTg > 2:2563540/1‑76 (MQ=255) tGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGt > 1:3027845/1‑76 (MQ=255) tGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGCGCGTAAGAATGGATTGCTGt > 1:29809/1‑76 (MQ=255) ggCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGtc > 2:302449/1‑75 (MQ=255) ggCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTa < 1:73603/76‑1 (MQ=255) gCTCCGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc < 2:1869053/76‑1 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc > 2:4024492/1‑76 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc > 2:4112265/1‑76 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc < 1:1531626/76‑1 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc < 2:1327046/76‑1 (MQ=255) gCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTAc < 1:4286853/76‑1 (MQ=255) cTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACg < 2:1707425/76‑1 (MQ=255) tACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGc > 1:1870835/1‑76 (MQ=255) tACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGc > 1:3859845/1‑76 (MQ=255) tACGCGG‑TCATTTGCGCAGTACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGc < 2:3420988/76‑1 (MQ=255) aCGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGcc > 2:1133251/1‑76 (MQ=255) | CGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAA‑G‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAGAATGGATTGCTGTACGCC > NC_000913/3236683‑3236827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |