Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,253,742 Δ1 bp coding (551/552 nt) yhaNM ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,253,7410G.99.3% 664.9 / ‑3.4 148coding (552/552 nt)yhaNMhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base . (86/61);  total (87/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01

Only 100 of 158 total aligned reads displayed.

TTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCAC  >  NC_000913/3253666‑3253812
                                                                            |                                                                       
ttCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCg                                                                         <  1:338546/76‑1 (MQ=255)
 tCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgt                                                                        <  1:1046328/76‑2 (MQ=255)
  cgcgGAATCGGAAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                       <  1:2531629/76‑3 (MQ=255)
  cgcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                       >  1:1353424/1‑74 (MQ=255)
  cgcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                       <  2:1287253/76‑3 (MQ=255)
   gcgGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCCGGATCTCAGCCAGCGTCgttc                                                                      >  2:4322141/1‑73 (MQ=255)
     ggAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTg                                                                   >  2:3553789/1‑76 (MQ=255)
     ggAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTg                                                                   >  1:3551144/1‑76 (MQ=255)
     ggAATCGAGAACAAAGCGGATCGCCGCAAACGGGACTGTATTGCCGAACTTCAGGATCTCAGCCCGCGTCGGtctg                                                                    >  2:3546189/1‑73 (MQ=255)
      gAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCCGCCAGCGTCGTTCTgg                                                                  >  2:3132965/1‑76 (MQ=255)
      gAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTgg                                                                  >  1:4731906/1‑76 (MQ=255)
      gAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTgg                                                                  >  1:2613781/1‑76 (MQ=255)
       aaTCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGa                                                                 >  2:2549550/1‑76 (MQ=255)
         tCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGaaa                                                               >  1:521196/1‑76 (MQ=255)
          cGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGaaaa                                                              <  2:4663617/76‑2 (MQ=255)
           gagaATAAAGCGGGTCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGc                                                             <  2:1111495/76‑1 (MQ=255)
           gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGc                                                             >  2:3260782/1‑76 (MQ=255)
           gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGCTCTGGAAAGc                                                             >  2:3523293/1‑76 (MQ=255)
           gacaaTAAAGGGGCTCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGc                                                             <  2:2190882/73‑1 (MQ=255)
             gaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCAc                                                           <  1:1749193/76‑1 (MQ=255)
             gaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCAc                                                           <  1:4831917/76‑1 (MQ=255)
              aaTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCAcc                                                          <  1:3452748/76‑1 (MQ=255)
              aaTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCAcc                                                          <  1:3590956/76‑1 (MQ=255)
               aTAAAGGCGGTTCGCCGCAAATGGGACTTCATTGTCTAACTTTCGGGTCTCGGCGAGCGTCTTTCTGGAACGCAcc                                                          <  2:3775119/76‑1 (MQ=255)
               aTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCg                                                         >  2:4412010/1‑76 (MQ=255)
               aTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCg                                                         <  1:2168480/76‑1 (MQ=255)
                 aaaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTc                                                       >  1:2147726/1‑76 (MQ=255)
                  aaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCa                                                      >  1:938449/1‑76 (MQ=255)
                  aaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCa                                                      <  1:1148337/76‑1 (MQ=255)
                  aaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCa                                                      >  1:1372746/1‑76 (MQ=255)
                   aGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAg                                                     <  1:3930714/76‑1 (MQ=255)
                      cGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCg                                                   <  2:2989405/76‑1 (MQ=255)
                       ggATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCgg                                                  >  2:2686024/1‑76 (MQ=255)
                       ggATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCgg                                                  >  2:4341601/1‑76 (MQ=255)
                        gATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGga                                                 >  1:2002704/1‑76 (MQ=255)
                         agcgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCCGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgag                                                <  2:410193/74‑1 (MQ=255)
                         aTCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCggcg                                                >  2:612089/1‑74 (MQ=255)
                         aTCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgag                                                <  1:4371128/76‑1 (MQ=255)
                         aTCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgag                                                >  2:4054822/1‑76 (MQ=255)
                         aTCGCCGCAAACGGGACTTCATTGACGAACCTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgag                                                <  1:4071763/76‑1 (MQ=255)
                          tCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGgaga                                               >  2:4121012/1‑76 (MQ=255)
                           cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGAc                                              <  2:1598331/76‑1 (MQ=255)
                           cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGAc                                              >  1:3190088/1‑76 (MQ=255)
                            gccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCCTTCTGGAAAGCACCGTCAGCGGAGAcc                                             >  2:238067/1‑75 (MQ=255)
                             gcgcAAACGGGACTTCATTGACGAGCTGCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCGCCGTCAGCGGAGActc                                            <  2:3780055/75‑1 (MQ=255)
                              cgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGActct                                           >  2:2129838/1‑76 (MQ=255)
                               gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCtt                                          >  1:3298523/1‑76 (MQ=255)
                               gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCtt                                          <  1:3495680/76‑1 (MQ=255)
                               gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCtt                                          <  1:444908/76‑1 (MQ=255)
                                cAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                         >  2:4295497/1‑76 (MQ=255)
                                cAAACGGGACTTCATTGACGAACTTCACGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                         >  2:2009936/1‑76 (MQ=255)
                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGc                                        >  2:886747/1‑76 (MQ=255)
                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGc                                        >  1:3507478/1‑76 (MQ=255)
                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGc                                        >  1:2877139/1‑76 (MQ=255)
                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGc                                        >  2:4287897/1‑76 (MQ=255)
                                   aCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                      >  2:2736816/1‑76 (MQ=255)
                                   aCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                      <  2:1436602/76‑1 (MQ=255)
                                   aCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                      <  1:4433888/76‑1 (MQ=255)
                                   aCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCCTGCTc                                      >  2:522702/1‑76 (MQ=255)
                                    cGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCg                                     <  1:1111612/76‑1 (MQ=255)
                                       gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCGCGccc                                  >  2:2533388/1‑76 (MQ=255)
                                          ttCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCctct                               <  1:1385715/76‑1 (MQ=255)
                                          ttCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCctct                               <  1:2779708/76‑1 (MQ=255)
                                          ttCATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCctct                               <  1:2578415/76‑1 (MQ=255)
                                            cATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGc                             <  1:4332702/76‑1 (MQ=255)
                                            cATTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGc                             >  2:1320287/1‑76 (MQ=255)
                                             aTTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGActct                                           >  1:3752097/1‑61 (MQ=255)
                                             aTTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGActct                                           <  2:3752097/61‑1 (MQ=255)
                                             aTTGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGcc                            >  2:476954/1‑76 (MQ=255)
                                              ttGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCca                           >  1:1958014/1‑76 (MQ=255)
                                              ttGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCca                           >  1:3378339/1‑76 (MQ=255)
                                               tGACGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcac                          <  2:1543320/76‑1 (MQ=255)
                                                 aCGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcacac                        <  1:829980/76‑1 (MQ=255)
                                                  cGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCcacaca                       >  1:2849140/1‑76 (MQ=255)
                                                  cGAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGCCAGCGGCGACTCTTGCTCGCCCTCTGCcacacc                       >  2:1106607/1‑75 (MQ=255)
                                                   gAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCacacac                      <  2:3369780/76‑1 (MQ=255)
                                                   gAACTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCacacac                      <  2:1958013/76‑1 (MQ=255)
                                                   gAACTTCAGGATCTCAGCCAGCGGCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCacacac                      >  2:1666889/1‑76 (MQ=255)
                                                    aaCTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCACCACACg                     >  2:3083424/1‑76 (MQ=255)
                                                     aCTTCAGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGc                    >  1:1814571/1‑76 (MQ=255)
                                                          aGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCCGCGGCGCCTCTTGCTCGCCCTCTGCCCCACACGActgct               >  1:1887871/1‑76 (MQ=255)
                                                          aGGATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCctgct               >  1:1857787/1‑76 (MQ=255)
                                                           ggATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCctgctg              <  1:3978485/76‑1 (MQ=255)
                                                           ggATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCctgctg              >  2:3622111/1‑76 (MQ=255)
                                                            gATCTCATCGAGCTTCGTTCTGGAAAGCGCCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTgg             <  1:2947563/76‑1 (MQ=255)
                                                            gATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCCCACACCCCTCCTgg             >  2:173628/1‑76 (MQ=255)
                                                            gATCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTgg             <  1:1017404/76‑1 (MQ=255)
                                                             aTCTCAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTggg            <  2:3908198/76‑1 (MQ=255)
                                                              tctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGt           <  1:943487/76‑1 (MQ=255)
                                                               ctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTa          >  1:1636352/1‑76 (MQ=255)
                                                               ctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTa          <  2:2232732/76‑1 (MQ=255)
                                                               ctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTa          <  1:3162786/76‑1 (MQ=255)
                                                               ctcAGCCAGCGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTa          >  2:2710977/1‑76 (MQ=255)
                                                                 cagccagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTaaa        <  1:1345252/76‑1 (MQ=255)
                                                                     cagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacacc    >  1:3335653/1‑76 (MQ=255)
                                                                     cagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacacc    <  1:1274651/76‑1 (MQ=255)
                                                                     cagcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacacc    >  1:2701130/1‑76 (MQ=255)
                                                                      agcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacacc  >  2:2357791/1‑75 (MQ=255)
                                                                      agcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacacca   >  1:4644395/1‑76 (MQ=255)
                                                                       gcGTCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAacaccac  >  2:2465281/1‑76 (MQ=255)
                                                                            |                                                                       
TTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCAC  >  NC_000913/3253666‑3253812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: