BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,389,812	Δ1 bp	intergenic (‑149/+4151)	tldD ← / ← cafA	TldD/CafA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,389,811	0	C	.	100.0%	73.5 / NA	27	intergenic (‑148/+4152)	tldD/cafA	TldD/CafA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/15); total (12/15)

CCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACG  >  NC_000913/3389736‑3389869

ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGc                                                            <  1:2671662/76‑1 (MQ=255)

  aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcgg                                                          <  2:3800745/76‑3 (MQ=255)

   gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                         <  2:3016971/76‑4 (MQ=255)

   gCCTACGGTTATGTTCCGGTTTGGAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                         <  2:1944798/76‑4 (MQ=255)

     cTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                      >  2:836861/1‑76 (MQ=255)

     cTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                      <  1:304087/76‑1 (MQ=255)

      tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTa                                                     <  2:4782498/76‑1 (MQ=255)

      tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTa                                                     <  1:616047/76‑1 (MQ=255)

      gaCGGTTATGTTCGGGTTTGGAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTa                                                     <  2:272122/75‑1 (MQ=11)

        cGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                   <  1:607024/76‑1 (MQ=255)

        cGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                   <  1:2925682/76‑1 (MQ=255)

         ggTTATGTTCTGGTTTGTGGGCCTGATAAGACGCACAGCGTGGCGTCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                  <  2:2276030/76‑1 (MQ=11)

         ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTGAAc                                                  >  1:3348254/1‑76 (MQ=11)

         ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                  <  1:1365262/76‑1 (MQ=255)

         ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTG‑CGGCGGAAAc                                                  >  1:2518525/1‑76 (MQ=11)

         ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATG‑CGGCGGAAAc                                                  >  1:2907340/1‑76 (MQ=11)

          gTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTG‑GGGCGTAAAcc                                                 >  2:1799066/1‑75 (MQ=11)

           ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATG‑CGGCGTAAACGc                                                >  2:2838897/1‑76 (MQ=11)

            taggTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                               <  1:2151783/73‑1 (MQ=11)

            tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                               <  1:2873606/76‑1 (MQ=255)

            tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                               >  1:2785777/1‑76 (MQ=255)

            tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                               <  2:3512195/76‑1 (MQ=255)

            tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTG‑CGGCGTAAACGcc                                               >  1:2378333/1‑76 (MQ=11)

             aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGGTG‑CGGCGGAAACGCCt                                              >  1:2629077/1‑76 (MQ=11)

              tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATG‑CGGCGGAAACGccct                                             >  1:2929543/1‑74 (MQ=11)

                 tCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                          <  1:2774926/76‑1 (MQ=255)

                 tCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                          <  1:1027279/76‑1 (MQ=255)

                  ccGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                         <  1:836861/76‑1 (MQ=12)

                  ccGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                         >  1:1545416/1‑76 (MQ=9)

                   cGGTTTGTAGGCCTGATAAGGCGCCCAGCGTCGCATCAGGCACCGTCTGTCGGATG‑CGGCGTAAACGCCTTATCCg                                        <  2:2910844/76‑1 (MQ=11)

                                                         ggCAACGGCTGTCGGACG‑CGGCGGAAACGCCCTATCCGGCCTACGGGTATGTTTCCTTTTGAGGCCTTGTAAGaac  >  1:3544425/1‑74 (MQ=2)

CCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACG  >  NC_000913/3389736‑3389869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`