Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,509,958 Δ1 bp intergenic (‑195/+314) yhfZ ← / ← trpS hypothetical protein/tryptophan tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,509,9560T.100.0% 465.1 / NA 102intergenic (‑193/+316)yhfZ/trpShypothetical protein/tryptophan tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (26/76);  total (26/76)

Only 100 of 106 total aligned reads displayed.

TCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAATTTG  >  NC_000913/3509882‑3510027
                                                                          |                                                                       
tCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCctt                                                                        <  2:2482788/76‑1 (MQ=255)
tCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCctt                                                                        <  1:2973543/76‑1 (MQ=255)
  aTCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCcttct                                                                      >  2:1960876/1‑74 (MQ=255)
  aTCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCcttct                                                                      >  1:4697638/1‑74 (MQ=255)
     tATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCtttt                                                                  >  2:2394051/1‑76 (MQ=255)
       tGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCtttttt                                                                <  2:4012837/76‑1 (MQ=255)
       tGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCtttttt                                                                <  1:4653751/76‑1 (MQ=255)
        gggtttCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTg                                                               <  2:4449889/73‑1 (MQ=255)
        ggTTTTCAATCGATTCCCTCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGCCGCC‑TTCTTTTTTg                                                               <  2:1414601/76‑1 (MQ=255)
        ggTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTg                                                               <  1:2021230/76‑1 (MQ=255)
        ggTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTg                                                               <  2:3563980/76‑1 (MQ=255)
        ggTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTg                                                               >  2:4683714/1‑76 (MQ=255)
           tttCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATa                                                            >  1:1960294/1‑76 (MQ=255)
           tttCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATa                                                            <  2:604458/76‑1 (MQ=255)
            ttCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATaa                                                           <  1:470732/76‑1 (MQ=255)
            ttCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATaa                                                           >  2:1039491/1‑76 (MQ=255)
             tCAATCGATTACCGCACTTTTCTCCCAACAAAGAACGGGCCAGCTTCGTGCTGACGACGCC‑TTCTTTTTTGATaaa                                                          <  1:2886367/76‑1 (MQ=255)
              cAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAAc                                                         <  1:4042983/76‑1 (MQ=255)
                aTCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGt                                                       <  2:3534131/76‑1 (MQ=255)
                 tCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGtt                                                      <  2:3666187/76‑1 (MQ=255)
                 tCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGtt                                                      <  1:4834254/76‑1 (MQ=255)
                  cGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTc                                                     >  2:4222548/1‑76 (MQ=255)
                  cGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTc                                                     <  1:3641211/76‑1 (MQ=255)
                   gATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCg                                                    <  1:3582307/76‑1 (MQ=255)
                   gATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCg                                                    <  2:2286314/76‑1 (MQ=255)
                   gATTACCGCACTTTTCACCCAACAAATAACGGACCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCg                                                    >  2:1477998/1‑76 (MQ=255)
                     ttACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGAc                                                  <  2:2693314/76‑1 (MQ=255)
                     ttACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGAc                                                  <  1:4146257/76‑1 (MQ=255)
                      tACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACg                                                 <  1:232299/76‑1 (MQ=255)
                      tACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACg                                                 <  2:1141752/76‑1 (MQ=255)
                       aCCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGc                                                <  1:4752687/76‑1 (MQ=255)
                        ccGCACTTTTCACCCAGCAAATAGCGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCa                                               <  2:787455/76‑1 (MQ=255)
                        ccGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGGCGCa                                               <  2:4439220/76‑1 (MQ=255)
                        ccGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCa                                               <  1:370286/76‑1 (MQ=255)
                         cGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCat                                              <  1:2044065/76‑1 (MQ=255)
                          gCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCata                                             <  1:3377387/76‑1 (MQ=255)
                          gCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCata                                             <  1:4210760/76‑1 (MQ=255)
                          gCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCata                                             <  1:3082489/76‑1 (MQ=255)
                          gCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCata                                             >  2:390753/1‑76 (MQ=255)
                          gCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCata                                             <  1:2247466/76‑1 (MQ=255)
                           cACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCataa                                            >  2:1697728/1‑76 (MQ=255)
                           cACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCataa                                            <  2:756758/76‑1 (MQ=255)
                           cACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCataa                                            <  1:358822/76‑1 (MQ=255)
                           cACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCataa                                            <  1:4412396/76‑1 (MQ=255)
                            aCTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCataat                                           <  1:4245703/76‑1 (MQ=255)
                             cTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCataata                                          <  1:4061026/76‑1 (MQ=255)
                              ttttCGCCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCAtaataa                                         >  1:2394729/1‑76 (MQ=255)
                              ttttCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCAtaataa                                         <  1:2254889/76‑1 (MQ=255)
                              ttttCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCAtaataa                                         >  2:1554603/1‑76 (MQ=255)
                                ttCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAt                                       <  2:236030/76‑1 (MQ=255)
                                ttCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAt                                       <  1:1050049/76‑1 (MQ=255)
                                ttCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAt                                       <  1:3026504/76‑1 (MQ=255)
                                ttCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAt                                       >  1:3572964/1‑76 (MQ=255)
                                 tCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAtt                                      <  2:2895431/76‑1 (MQ=255)
                                  cACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAttt                                     <  2:1942014/76‑1 (MQ=255)
                                  cACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAttt                                     <  1:3705017/76‑1 (MQ=255)
                                   ccccAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAAtttt                                    <  1:1717070/75‑1 (MQ=255)
                                    cccAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTc                                   >  1:583485/1‑76 (MQ=255)
                                     ccAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCa                                  <  1:2930348/76‑1 (MQ=255)
                                     ccAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCa                                  <  1:3034969/76‑1 (MQ=255)
                                     ccAACAAATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCa                                  <  1:2205349/76‑1 (MQ=255)
                                      caacaaATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAg                                 <  1:132976/76‑1 (MQ=255)
                                      caacaaATAACGGGACAGCGTCGTGATGACGACGAC‑TTATTTTTTGATAAACGTTCGACGCATAATAAGTTTTCAg                                 >  1:3630702/1‑76 (MQ=255)
                                       aacaaATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGt                                >  2:3697678/1‑76 (MQ=255)
                                        acaaATAGCGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTa                               <  1:3737044/76‑1 (MQ=255)
                                        acaaATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTa                               >  2:3649931/1‑76 (MQ=255)
                                         caaATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTaa                              <  1:2289503/76‑1 (MQ=255)
                                         caaATAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTaa                              <  2:1947764/76‑1 (MQ=255)
                                          aaaTAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTaaa                             <  2:1376698/76‑1 (MQ=255)
                                            aTAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAAtt                           <  2:4192694/76‑1 (MQ=255)
                                            aTAACGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAAtt                           >  1:4308597/1‑76 (MQ=255)
                                               aCGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGaa                        >  2:812575/1‑76 (MQ=255)
                                               aCGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGaa                        <  1:947317/76‑1 (MQ=255)
                                                cGGGCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAat                       >  1:626098/1‑76 (MQ=255)
                                                 gggCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAata                      >  1:1227818/1‑76 (MQ=255)
                                                 gggCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAata                      <  1:616578/76‑1 (MQ=255)
                                                 gggCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAata                      >  1:1764723/1‑76 (MQ=255)
                                                  ggCCAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAatat                     <  1:944528/76‑1 (MQ=255)
                                                    ccAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATAttt                   <  2:1396951/76‑1 (MQ=255)
                                                    ccAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATAttt                   >  2:39656/1‑76 (MQ=255)
                                                    ccAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTCTCAGTAAATTGAATAttt                   <  2:3152822/76‑1 (MQ=255)
                                                     cAGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTta                  >  2:4652511/1‑76 (MQ=255)
                                                      aGCGTCGTGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTtat                 >  2:4338653/1‑76 (MQ=255)
                                                        cgtcgtGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTatat               <  2:546508/76‑1 (MQ=255)
                                                         gtcgtGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATc              <  2:620355/76‑1 (MQ=255)
                                                          tcgtGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCt             <  1:3062027/76‑1 (MQ=255)
                                                          gcgtGATGACGACGCC‑TGCTTTTTTGATAAACGGTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCt             <  1:3101214/75‑1 (MQ=255)
                                                           cgtGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCtt            <  2:3787801/76‑1 (MQ=255)
                                                            gtGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTc           <  1:1644448/76‑1 (MQ=255)
                                                            gtGATGACGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTc           <  1:2279200/76‑1 (MQ=255)
                                                             tgatgaCGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCa          >  1:2545351/1‑76 (MQ=255)
                                                              gatgaCGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAg         <  1:4621690/76‑1 (MQ=255)
                                                                tgaCGACGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGa       >  1:4112944/1‑76 (MQ=255)
                                                                 gacgacGCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGaa      <  1:1255573/76‑1 (MQ=255)
                                                                  acgacgCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAAt     <  2:3437304/76‑1 (MQ=255)
                                                                   cgacgCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAAtt    <  2:3178095/76‑1 (MQ=255)
                                                                    gacgCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAAttt   <  1:3753040/76‑1 (MQ=255)
                                                                    gacgCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAAttt   <  2:2346883/76‑1 (MQ=255)
                                                                     acgCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAATTTg  <  2:2394728/76‑1 (MQ=255)
                                                                     acgCC‑TTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAATTTg  <  2:2995396/76‑1 (MQ=255)
                                                                          |                                                                       
TCATCTATGGTTTTCAATCGATTACCGCACTTTTCACCCAACAAATAACGGGCCAGCGTCGTGATGACGACGCCTTTCTTTTTTGATAAACGTTCGACGCATAATAAATTTTCAGTAAATTGAATATTTATATCTTCAGGAATTTG  >  NC_000913/3509882‑3510027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑