Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,575,446 +G coding (912/942 nt) gntR ← GntR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,575,4451.G99.2% 348.1 / ‑3.7 132coding (913/942 nt)gntRGntR
Reads supporting (aligned to +/- strand):  ref base . (1/0);  new base G (71/60);  total (72/60)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

Only 100 of 137 total aligned reads displayed.

GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC  >  NC_000913/3575370‑3575514
                                                                            |                                                                     
gATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCcagca                                                                        >  2:3251716/1‑76 (MQ=255)
  tcctccCGGTGACAAGGTGAAACCTATATCTACCATTTTCGTTGTCACAGTTTCGCCACGAATTCGCGCcagca‑gg                                                                     <  1:2695266/76‑2 (MQ=255)
  accGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCccgca‑gg                                                                     <  2:1463066/75‑2 (MQ=255)
       ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTc                                                                 >  2:4450701/1‑76 (MQ=255)
       ccGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTc                                                                 <  1:3491237/76‑1 (MQ=255)
        cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                >  1:1975106/1‑76 (MQ=255)
        cGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCa                                                                >  1:237073/1‑76 (MQ=255)
         ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAg                                                               >  2:1945027/1‑76 (MQ=255)
         ggTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAg                                                               >  2:4498595/1‑76 (MQ=255)
          gTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgc                                                              >  2:2505981/1‑76 (MQ=255)
            gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCCGGCGTTCAgccc                                                            >  2:136908/1‑74 (MQ=255)
            gACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAgcgc                                                            >  2:4510752/1‑76 (MQ=255)
             aCAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGcc                                                           <  2:4174719/76‑1 (MQ=255)
              cAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCa                                                          >  1:4075271/1‑76 (MQ=255)
               aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa                                                         <  2:250329/76‑1 (MQ=255)
               aaGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCaa                                                         >  1:2666946/1‑76 (MQ=255)
                aGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAAt                                                        >  2:2320499/1‑76 (MQ=255)
                 ggTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATa                                                       <  1:3130580/76‑1 (MQ=255)
                  gTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATAc                                                      >  2:2137049/1‑76 (MQ=255)
                  gTGAAACCTAAATCTAACATTTGTGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATAc                                                      <  2:66117/76‑1 (MQ=255)
                   tGAAACCTAAGTCTACCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACt                                                     <  1:3370713/76‑1 (MQ=255)
                     aaaCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGc                                                   >  2:1171737/1‑76 (MQ=255)
                      agccTGAATCTAACATTTTCGGTGTCTCAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGcc                                                  <  2:2778472/74‑1 (MQ=255)
                       aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGccc                                                 >  1:2560172/1‑76 (MQ=255)
                       aCCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGccc                                                 >  1:2530192/1‑76 (MQ=255)
                         cTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCAt                                               <  2:4837644/76‑1 (MQ=255)
                          tAAATCTAACATTTTCGGTGTCTCAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATc                                              <  1:2964509/76‑1 (MQ=255)
                          tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATc                                              >  1:2736535/1‑76 (MQ=255)
                          tAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATc                                              >  1:1526445/1‑76 (MQ=255)
                           aaaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATcc                                             <  1:4679608/76‑1 (MQ=255)
                           aaaTCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATcc                                             >  1:1177207/1‑76 (MQ=255)
                              tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                          >  1:4356781/1‑76 (MQ=255)
                              tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                          <  1:3855338/76‑1 (MQ=255)
                              tCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCt                                          >  1:3667515/1‑76 (MQ=255)
                                tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCCTCCCCTCa                                        >  2:376141/1‑76 (MQ=255)
                                tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTcc                                        >  2:4212506/1‑75 (MQ=255)
                                tAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCa                                        >  1:1104669/1‑76 (MQ=255)
                                 aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                       <  2:777632/76‑1 (MQ=255)
                                 aaCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAc                                       <  1:3493140/76‑1 (MQ=255)
                                  aCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcg                                      >  1:1610874/1‑76 (MQ=255)
                                  aCATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCAcg                                      >  1:2920764/1‑76 (MQ=255)
                                   cATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCTTTCAGCGCCAATACTGCCCATCCGCTCAccc                                     >  2:1167515/1‑74 (MQ=255)
                                     ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg                                   >  2:4249158/1‑76 (MQ=255)
                                     ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg                                   <  2:1104668/76‑1 (MQ=255)
                                     ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg                                   <  2:3273026/76‑1 (MQ=255)
                                     ttttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcgg                                   >  1:4563098/1‑76 (MQ=255)
                                      tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggc                                  >  1:3172765/1‑76 (MQ=255)
                                      tttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggc                                  >  1:1005479/1‑76 (MQ=255)
                                       ttCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACgcggcg                                 >  2:4863808/1‑76 (MQ=255)
                                       ttCGGTGCCACAGATTCGCCACGAATACGCGCCAGCAGGCGCTCAGCACCAATACAGCCTATCCGCTCACgcggcg                                 >  2:2652880/1‑76 (MQ=255)
                                        tCGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGt                                >  2:2798174/1‑76 (MQ=255)
                                         cGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTc                               <  1:97107/76‑1 (MQ=255)
                                         cGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTc                               <  2:4411995/76‑1 (MQ=255)
                                         cGGTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTc                               >  1:378426/1‑76 (MQ=255)
                                          ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGGCAATACTGCCCATCCGCTCACGCGGCGTCa                              >  2:1824394/1‑76 (MQ=255)
                                          ggTGTCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCa                              <  2:2350578/76‑1 (MQ=255)
                                          ggTGGCACAGATTCGCCACGAAGACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCGCACGCGCCCTCa                              >  2:372828/1‑76 (MQ=255)
                                            tgtCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGc                            >  1:2255400/1‑76 (MQ=255)
                                              tcccaGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCAc                          <  2:789347/73‑1 (MQ=255)
                                              tCACAGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGctc                          <  1:835560/76‑3 (MQ=255)
                                                acaGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGc                        <  2:3461304/76‑1 (MQ=255)
                                                 cataTTCGCCACGAATGCGCGCGAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCt                       <  2:3988426/73‑1 (MQ=255)
                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCCCGCGGCGCCAGCCCGCTc                      >  2:51636/1‑76 (MQ=255)
                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                      >  2:4481831/1‑76 (MQ=255)
                                                  aGATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTc                      <  2:1627679/76‑1 (MQ=255)
                                                   gATTCGCCAGGAATACGCGCCAGCAGGCGTTCAGCTCCCCTACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                     <  2:4671215/76‑1 (MQ=255)
                                                   gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                     <  2:3172765/76‑1 (MQ=255)
                                                   gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                     >  1:3901452/1‑76 (MQ=255)
                                                   gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                     <  1:4613666/76‑1 (MQ=255)
                                                   gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                     <  2:4115525/76‑1 (MQ=255)
                                                   gATTCGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCg                     >  2:3849470/1‑76 (MQ=255)
                                                    gttCGCCACGAATGCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGc                    <  2:4807414/75‑1 (MQ=255)
                                                     ttCGCCACGAAAACGCGCCAGCAGGCGTTAAGCGCCAAACCTCCCCATCCGCCCACGCCGCGCCAACAAGCTCGCa                   >  2:200587/1‑76 (MQ=255)
                                                       cGCCACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAg                 >  2:1508179/1‑76 (MQ=255)
                                                         ccACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc               <  2:2033514/76‑1 (MQ=255)
                                                         ccACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc               <  2:4203203/76‑1 (MQ=255)
                                                         caaCGAAGACGCGCCAGCAGGCGTGCAGCGCCAATACGGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTc               <  2:4231019/74‑1 (MQ=255)
                                                          cACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCg              <  1:1207877/76‑1 (MQ=255)
                                                          cACGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCg              >  1:2361382/1‑76 (MQ=255)
                                                           ccGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt             <  1:309179/75‑1 (MQ=255)
                                                           aCGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt             >  1:4349632/1‑76 (MQ=255)
                                                           aCGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGt             >  1:3899559/1‑76 (MQ=255)
                                                            cGAATGCGCGCCAGCAGGCGGTCAGCGCCAATTGTGCCCATCCTCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg            <  2:1282502/76‑1 (MQ=255)
                                                            cGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg            >  1:728545/1‑76 (MQ=255)
                                                            cGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg            <  1:2306353/76‑1 (MQ=255)
                                                            cGAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTg            >  1:623713/1‑76 (MQ=255)
                                                             gAATACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCCCGCTCGCCAGTCGTgg           >  2:3353405/1‑76 (MQ=255)
                                                              aaTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCTGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGc          >  2:3229933/1‑76 (MQ=255)
                                                               agaCGCGCCGGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt         <  2:2223393/74‑1 (MQ=255)
                                                               aTACGCGCCGGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt         <  1:3699628/76‑1 (MQ=255)
                                                               aTACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCt         >  2:1746176/1‑76 (MQ=255)
                                                                tACGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCCAGTCGTGGCTc        >  2:4334060/1‑76 (MQ=255)
                                                                 aCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTcc       <  2:4632479/76‑1 (MQ=255)
                                                                 aCGCGCCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGACTcc       <  1:4338801/76‑1 (MQ=255)
                                                                  cgcgCCAGCAGGCGTGCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCa      <  1:2708148/76‑1 (MQ=255)
                                                                    cgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATc    >  2:3148178/1‑76 (MQ=255)
                                                                    cgcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCACCACGCTCCCAAGCCGTGGCTCCCTc    >  2:4818828/1‑76 (MQ=255)
                                                                     gcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTccacca   >  2:3317791/1‑76 (MQ=255)
                                                                     gcCAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCa   <  2:4221543/76‑1 (MQ=255)
                                                                      ccAGCAGGCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGCCGTGGCTCCATCAc  >  1:3584439/1‑76 (MQ=255)
                                                                            |                                                                     
GATCCGCCCGGTGACAAGGTGAAACCTAAATCTAACATTTTCGGTGTCACAGATTCGCCACGAATACGCGCCAGCA‑GCGTTCAGCGCCAATACTGCCCATCCGCTCACGCGGCGTCAGCACGCTCGCAAGTCGTGGCTCCATCAC  >  NC_000913/3575370‑3575514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑