| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,872,450 | +G | coding (338/387 nt) | yidW ← | regulator protein for dgo operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,872,450 | 1 | . | G | 99.3% | 365.2 / ‑3.8 | 140 | coding (338/387 nt) | yidW | regulator protein for dgo operon |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (72/67); total (72/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
Only 100 of 146 total aligned reads displayed.
GTCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CT‑CCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCGT > NC_000913/3872375‑3872519 | gTCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑Ct < 1:2824116/76‑1 (MQ=255) tCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑Ctg < 1:3143339/76‑2 (MQ=255) ccTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑Ctgc < 1:2135880/76‑3 (MQ=255) ccTGATTGTTGGAAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAACTCGCGCGCTCCG‑Ctgc > 1:240706/1‑74 (MQ=255) aTTGTTGGCAATCATCTCGTTCGGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCaa > 1:122269/1‑76 (MQ=255) tgttgtCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACg < 2:3299075/76‑1 (MQ=255) gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCCACgg > 2:1479642/1‑76 (MQ=255) gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACgg < 2:1301232/76‑1 (MQ=255) gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACgg > 2:4679487/1‑76 (MQ=255) gttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACgg > 1:2369217/1‑76 (MQ=255) ttgGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACggg < 1:1210332/76‑1 (MQ=255) ggCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCa > 1:987429/1‑76 (MQ=255) cAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAAt < 1:422430/76‑1 (MQ=255) aaTCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATc < 2:2115654/76‑1 (MQ=255) aaTCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATc < 1:2085416/76‑1 (MQ=255) aaTCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTA‑CTGCCCAACGGGCAATc < 2:446239/76‑1 (MQ=255) atcatcTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CCGCCCAACGGGCAATCg > 1:3229656/1‑76 (MQ=255) tcatcTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGc < 2:3575142/76‑1 (MQ=255) catcTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGcc < 2:3683219/76‑1 (MQ=255) gTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCCACGGGCAATCCCCCGTTcc > 2:3101687/1‑76 (MQ=255) ttCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCACTCGCCGGTTccc > 2:4868381/1‑75 (MQ=255) ttCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTcca > 1:1348178/1‑76 (MQ=255) tCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccac < 1:2569595/76‑1 (MQ=255) tCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccac > 1:4701705/1‑76 (MQ=255) cAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccacc > 1:3137328/1‑76 (MQ=255) aGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccacca > 1:4156599/1‑76 (MQ=255) aGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTccacca > 1:3366102/1‑76 (MQ=255) gcgcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAg > 2:2193324/1‑76 (MQ=255) gcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAt < 1:642293/76‑1 (MQ=255) gcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAt > 2:1220849/1‑76 (MQ=255) gcCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAt < 1:2631047/76‑1 (MQ=255) ccGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAtt < 1:78062/76‑1 (MQ=255) cGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAttt < 2:3228004/76‑1 (MQ=255) gATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTc > 2:823085/1‑76 (MQ=255) gATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGCTCCACCAGATTTc > 2:155521/1‑76 (MQ=255) ttCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGc < 1:395285/76‑1 (MQ=255) ttCAAGCTGCGCCAGATCGCTGGAAGTCGACCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGc > 2:3317209/1‑76 (MQ=255) cAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCAc > 2:2996132/1‑76 (MQ=255) aaccTGCGCCAGATCGCTGGAAGCCGCGCGCTCTG‑CTGCCCAACCGCCACTCGCCCTCTCCACCCCATCTCGCACt > 2:35680/4‑76 (MQ=255) aTCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACtt < 1:3063305/76‑1 (MQ=255) tCTGCGCCAGCTCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTc < 1:4744317/76‑1 (MQ=255) tCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTc < 1:1384238/76‑1 (MQ=255) tCTGCGCCAGATCGCTGGAAGCCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTc > 2:495518/1‑76 (MQ=255) cTGCGCCAGATCGCTGGAAGTCTCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCg < 1:3431720/76‑1 (MQ=255) cTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCg < 1:2940339/76‑1 (MQ=255) cTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCg > 1:3039528/1‑76 (MQ=255) tGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGc < 1:4528553/76‑1 (MQ=255) gcgcCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCt > 2:4300156/1‑76 (MQ=255) cgcCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTc > 1:4124139/1‑76 (MQ=255) gcCAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCa < 1:4509002/76‑1 (MQ=255) ccAGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCAt < 2:1873603/76‑1 (MQ=255) aGATCGGGGGAAGGCGGGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATgg < 2:2362520/76‑1 (MQ=255) aGATCGCTGGAGTGCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATgg < 1:2409032/76‑1 (MQ=255) aGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAttt < 2:2292077/60‑1 (MQ=255) aGATCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGAttt > 1:2292078/1‑60 (MQ=255) aTCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCa > 2:3737842/1‑76 (MQ=255) tCGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCAc < 1:834300/76‑1 (MQ=255) tCGCTGGAAGTCGCGCGCCCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCAc < 1:247392/76‑1 (MQ=255) ctcTGTAAGGCGCGCGCTCGGCCG‑CGCAACGGGCAATCGCCGGTTCCACCAGATTGCGCACTTCGCTCATGGCACt < 2:4477425/74‑1 (MQ=255) cGCTGTAAGTCGCTCGCTCTG‑CTGCCCAACGGGCAGTCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACt < 1:706245/76‑1 (MQ=255) cGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACt < 1:4148298/76‑1 (MQ=255) cGCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACt < 2:4283096/76‑1 (MQ=255) gCTGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTg > 1:2926424/1‑76 (MQ=255) tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCCCTTCGCTCATGGCACTgct > 2:1570337/1‑74 (MQ=255) tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCACGGCACTGAt > 2:3810292/1‑76 (MQ=255) tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGGTCCATCAGATTTCGCACTTCGCTCATGGCACTGAt > 1:3133888/1‑76 (MQ=255) tGGAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCAGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGAt > 1:853024/1‑76 (MQ=255) tGGAAGTCGCGCGCGCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGAt < 2:4375409/76‑1 (MQ=255) gggAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGAt < 2:92561/75‑1 (MQ=255) ggAAGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATa > 1:2824679/1‑76 (MQ=255) ggAAGTCGCGCGCTCTG‑CTGCCCAACGGGACATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATa > 1:3897710/1‑76 (MQ=255) gAAGTCGCGAGCTCTG‑CTGCACAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATaa > 2:611658/1‑76 (MQ=255) aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCTCCGATAAg > 2:55241/1‑76 (MQ=255) aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATaac > 2:4836926/1‑75 (MQ=255) aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAg < 1:1692437/76‑1 (MQ=255) aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAg > 2:1673209/1‑76 (MQ=255) aaGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAg < 2:2695036/76‑1 (MQ=255) aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc < 2:1262382/76‑1 (MQ=255) aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc < 1:2619394/76‑1 (MQ=255) aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc < 2:3545203/76‑1 (MQ=255) aGTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGc > 1:3261363/1‑76 (MQ=255) gTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGcc < 2:4156599/76‑1 (MQ=255) gTCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGcc < 2:2615210/76‑1 (MQ=255) tCGCGCGCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCg > 2:4255360/1‑76 (MQ=255) gcgcgggCGCTG‑CTGCCCAACGGGCAATCGCCGGTTCCGCCAGATTGCGCACTTCGCTCCTGGCACTGATAAACCg < 2:4530359/75‑1 (MQ=255) cgcgcgCTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGt > 2:3449553/1‑76 (MQ=255) cgcgcgCTCTG‑CTGCCCAACGGGCAATCGCCGGCCCCACCAGATTTCGCACTTCGCTCATGGCCCTGATAAGCCGt > 2:112962/1‑76 (MQ=255) cgcgcgCTCTG‑CTGCCCAACGGGCAATCGCCGGATCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGt < 1:60573/76‑1 (MQ=255) gcgcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTg < 2:3238035/76‑1 (MQ=255) gcgcgcTCTG‑CTGCCCAACGGGAAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTg < 2:861358/76‑1 (MQ=255) gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg > 1:1954124/1‑76 (MQ=255) gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg > 1:4594712/1‑76 (MQ=255) gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg > 1:2669332/1‑76 (MQ=255) gcgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTggg > 2:3454112/1‑76 (MQ=255) cgcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGt < 2:3916612/76‑1 (MQ=255) gcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTc > 2:4610545/1‑76 (MQ=255) gcTCTG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTc > 2:2161237/1‑76 (MQ=255) ctctG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCg < 1:1114218/76‑1 (MQ=255) tctG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCgc > 2:4733721/1‑75 (MQ=255) tctG‑CTGCCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCGt > 1:4656214/1‑76 (MQ=255) | GTCCTGATTGTTGGCAATCATCTCGTTCAGCGCCGATTCAATCTGCGCCAGATCGCTGGAAGTCGCGCGCTCTG‑CT‑CCCAACGGGCAATCGCCGGTTCCACCAGATTTCGCACTTCGCTCATGGCACTGATAAGCCGTGGGTCGT > NC_000913/3872375‑3872519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |