| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,930,568 | +G | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,930,567 | 1 | . | G | 98.2% | 304.5 / ‑0.7 | 114 | intergenic (+65/‑374) | kup/rbsD | low affinity potassium transport system/RbsD |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (46/66); total (48/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
TATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑T‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG > NC_000913/3930492‑3930637 | tatGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGt‑t < 1:1512529/76‑1 (MQ=255) atGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑T‑g < 1:3243817/76‑1 (MQ=255) tGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGG‑GGCAAGGTTAGGGT‑T‑gg > 2:3316025/1‑75 (MQ=255) gTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCCCTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑T‑ggc > 2:412867/1‑74 (MQ=255) tAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTNGCAA‑GTTATGGT‑TGGCGAGaa < 1:2345067/76‑1 (MQ=255) tAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGaa > 1:2535923/1‑76 (MQ=255) tAACGTCCGTCGGGCACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGGGGCAA‑GCTCTGGT‑TGGCGAGaa > 1:3183119/1‑76 (MQ=255) aaCGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGaaa < 2:2986870/76‑1 (MQ=255) cgtccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACg < 1:2847975/76‑1 (MQ=255) cgtccgtcGGGTACAGAGTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACg < 1:3532547/76‑1 (MQ=255) ccgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCa < 2:4695341/76‑1 (MQ=255) cgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaa > 2:637156/1‑76 (MQ=255) cgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaa < 1:571915/76‑1 (MQ=255) cgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaa < 2:2327679/76‑1 (MQ=255) cgtcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaa > 2:2809998/1‑76 (MQ=255) cgtcGGGTACAGATTGAAAAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaa < 1:1512337/76‑1 (MQ=255) gcGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAAc < 2:812109/75‑1 (MQ=255) cGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACg < 1:1211521/76‑1 (MQ=255) cGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACg > 1:1644616/1‑76 (MQ=255) gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGt < 1:2184757/76‑1 (MQ=255) gggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGt < 2:2897149/76‑1 (MQ=255) ggTACAGATTGAACAACTGTCGCCGTCTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTa < 2:2677371/76‑1 (MQ=255) ggTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTa < 2:3869442/76‑1 (MQ=255) gTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTag > 1:2821828/1‑76 (MQ=255) tACAGATTGAACGACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTaga < 1:4551122/76‑1 (MQ=255) tACAGATTGAACAACTGTCGACCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAGACGCCAAACGCaga > 1:4402820/1‑76 (MQ=255) aCAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGACACGCCAAACGTagaa > 2:1851487/1‑76 (MQ=255) aCAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTagaa > 1:3166723/1‑76 (MQ=255) cAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTagaag > 2:677402/1‑76 (MQ=255) aGATTGAGCAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTagaaga < 2:1397549/76‑1 (MQ=255) gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa < 2:4552049/76‑1 (MQ=255) gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa > 1:3154303/1‑76 (MQ=255) gATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAgaagaa > 1:2867383/1‑76 (MQ=255) aTTGGACAACTGTGGCAGACGTGCTGGCGCGTGGTGGCAA‑GTGAGGGTGG‑GAGAGAAATGCGAAACGTcgaaggag > 2:3083387/1‑73 (MQ=255) aTTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGaagaag < 2:4167508/76‑1 (MQ=255) ttGAACAACTGTCGCTCTCTTTTTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGCAGAAGt < 1:2147299/76‑1 (MQ=255) ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGt > 2:4196503/1‑76 (MQ=255) ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGt < 1:2972264/76‑1 (MQ=255) ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGt > 2:2517725/1‑76 (MQ=255) ttGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGt > 1:3866881/1‑76 (MQ=255) tGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGtt > 2:2039764/1‑76 (MQ=255) acaccTGTCGCACACATTCTTGCGCGTTGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc < 1:3785874/76‑1 (MQ=255) acaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc < 1:3746559/76‑1 (MQ=255) acaacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTc < 2:2014130/76‑1 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaaa > 1:349184/1‑58 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCaaa < 2:349184/58‑1 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAGGAAGTTTTCCa > 1:406113/1‑76 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCa < 2:4407751/76‑1 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCa < 2:707418/76‑1 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCa < 2:1650375/76‑1 (MQ=255) aacTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCa > 1:1900900/1‑76 (MQ=255) acTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCAc < 2:4284187/76‑1 (MQ=255) tGTCGCGCACTTGCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCg < 2:434828/76‑1 (MQ=255) tGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCg > 2:2838583/1‑76 (MQ=255) gTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGc < 1:2111033/76‑1 (MQ=255) gTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGc > 1:1240110/1‑76 (MQ=255) tCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt < 1:2039765/76‑1 (MQ=255) ccGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCt < 2:2120149/75‑1 (MQ=255) cGCCCAGTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTg < 1:4328651/76‑1 (MQ=255) gCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGTAG‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc > 1:2809202/1‑76 (MQ=255) gCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc < 1:4287667/76‑1 (MQ=255) gCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGc < 2:2382629/76‑1 (MQ=255) cccGCTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg < 2:461689/76‑1 (MQ=255) cccACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg < 2:4465552/76‑1 (MQ=255) cccACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCg > 1:3284369/1‑76 (MQ=255) ccAGTTTCGGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCgg < 2:1018396/76‑1 (MQ=255) aCTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTc > 2:2017606/1‑76 (MQ=255) cTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCt > 1:3339877/1‑76 (MQ=255) cTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCt > 1:1734165/1‑76 (MQ=255) tttCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg < 1:1398775/76‑1 (MQ=255) tttCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTg > 2:1379107/1‑76 (MQ=255) ttCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTgg > 2:1530486/1‑76 (MQ=255) tCTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGa > 1:654067/1‑76 (MQ=255) cTGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGaa > 1:3580419/1‑76 (MQ=255) tGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAg < 2:3496414/76‑1 (MQ=255) tGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAg > 1:1345004/1‑76 (MQ=255) tGGCGCGTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCGGCGGTCTGGCAg > 2:1658052/1‑76 (MQ=255) ggCGCGGGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAgg < 2:33605/76‑1 (MQ=255) gcgcGTGGTGGCAA‑GTTATGGT‑TGGCGCGAAACTCCACGCGTAGCATAGGTTTTCCGCCGCTGCGGTCTGGAATGa < 1:122372/76‑1 (MQ=255) cgcgTGGTGGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGAt > 1:3237132/1‑76 (MQ=255) gtggtgGCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTaa > 2:4021995/1‑76 (MQ=255) gtggtgGCAA‑GTTATGGC‑TGGCGAGACCCGCCACACGTAGAAGAAGTTTTCCACCGCTGCGGTGTGGCAGGATTac > 2:4030724/1‑75 (MQ=255) gtggCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGtt < 2:670477/76‑1 (MQ=255) tggCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTg < 1:1165428/76‑1 (MQ=255) ggCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGc < 1:103705/76‑1 (MQ=255) gCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGcc < 1:1890864/76‑1 (MQ=255) gCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGcc < 2:590608/76‑1 (MQ=255) gCAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGcc > 1:1374616/1‑76 (MQ=255) cAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg < 2:2637031/76‑1 (MQ=255) cAA‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCg < 1:817377/76‑1 (MQ=255) aa‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt < 1:3843748/70‑1 (MQ=255) aa‑GTTATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGt > 2:3843748/1‑70 (MQ=255) gTTATGGT‑TGGCGAGCAACGCGAAAGGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgat < 2:347713/76‑1 (MQ=255) tATGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatga > 1:1627463/1‑76 (MQ=255) aTGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatgat < 1:4196503/76‑1 (MQ=255) aTGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatgat < 1:504274/76‑1 (MQ=255) aTGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGgatgat < 1:903371/76‑1 (MQ=255) aTGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTCGAAGGATTAAGTTGCCGgatgat > 1:2627950/1‑76 (MQ=255) tGGT‑TGGCGAGAAACGCCAAACGTAGATGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTACGTTGCCGgatgatt < 1:334428/76‑2 (MQ=255) tGGT‑TGGCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGatgatg < 1:3583887/76‑1 (MQ=255) | TATGTCCATAACGTCCGTCGGGTACAGATTGAACAACTGTCGCCCACTTTCTGGCGCGTGGTGGCAA‑GTTATGGT‑T‑GCGAGAAACGCCAAACGTAGAAGAAGTTTTCCACCGCTGCGGTCTGGAAGGATTAAGTTGCCGGATGATG > NC_000913/3930492‑3930637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |