| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,008,400 | +AA | coding (483/516 nt) | b4555 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,008,398 | 1 | . | A | 100.0% | 10.5 / NA | 6 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (6/0); total (6/0) | |||||||||||
| * | NC_000913 | 4,008,398 | 2 | . | A | 100.0% | 11.4 / NA | 6 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (6/0); total (6/0) | |||||||||||
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTTGTG > NC_000913/4008327‑4008432 || gTTTCTCTGCCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGCTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:1973290/76‑1 (MQ=255)gTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:4634551/76‑1 (MQ=255) tttCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGCTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag > 2:4349596/1‑75 (MQ=255) ttCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:4796033/76‑3 (MQ=255) ttCTCTACCGTAACCGGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 2:4594680/76‑3 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:2069/1‑74 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 1:538722/1‑74 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 1:3856558/1‑73 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 2:2019842/1‑73 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 2:3326156/1‑73 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 2:3764795/1‑73 (MQ=255) || GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTTGTG > NC_000913/4008327‑4008432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |