BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,031,984	+C	coding (1250/1299 nt)	trkH →	TrkH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,031,983	1	.	C	100.0%	323.1 / NA	119	A417P (GCA→CCA)	trkH	TrkH
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (62/57); total (62/57)

Only 100 of 123 total aligned reads displayed.

CGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTT  >  NC_000913/4031908‑4032053

cGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGAGTTTATTGTCAGGATGCTGGAGATTATCg                                                                         >  2:2045051/1‑76 (MQ=255)

 gTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑c                                                                       >  2:482725/1‑76 (MQ=255)

    tCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑ccac                                                                    >  1:1393720/1‑73 (MQ=255)

       tCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACggg                                                                  <  2:3567881/76‑1 (MQ=255)

        cGAGGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                 <  1:4539359/76‑1 (MQ=255)

        cGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                 >  2:4166827/1‑76 (MQ=255)

        cGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                 <  1:4489328/76‑1 (MQ=255)

        cGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGc                                                                 <  2:1649431/76‑1 (MQ=255)

         gAAGCCGTTTGGGGATTTTTCTCCTCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCg                                                                <  1:4176797/76‑1 (MQ=255)

         gAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCg                                                                >  1:59516/1‑76 (MQ=255)

          aaGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGt                                                               <  2:1618641/76‑1 (MQ=255)

           aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTg                                                              <  1:719852/76‑1 (MQ=255)

           aGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTg                                                              >  2:1810645/1‑76 (MQ=255)

            gCCGTTTGGTGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTgg                                                             <  1:1681824/76‑1 (MQ=255)

            gCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTgg                                                             <  1:912773/76‑1 (MQ=255)

             ccGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGa                                                            >  1:2452883/1‑76 (MQ=255)

              cGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGAt                                                           >  2:1042348/1‑76 (MQ=255)

               gTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATg                                                          >  1:2561387/1‑76 (MQ=255)

                 ttGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGAc                                                        >  2:508632/1‑76 (MQ=255)

                  tGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACt                                                       >  2:1694437/1‑76 (MQ=255)

                  tGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGCGGATGACt                                                       >  1:2741525/1‑76 (MQ=255)

                   ggggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCCCGGGCGTGGGTGACtt                                                      >  2:2539398/1‑76 (MQ=255)

                   ggggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCCCGGGCGTGGATGACtt                                                      >  2:2952549/1‑76 (MQ=255)

                   ggggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                      <  2:1195446/76‑1 (MQ=255)

                   ggggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtt                                                      >  2:2938406/1‑76 (MQ=255)

                    gggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACttt                                                     >  1:4134844/1‑76 (MQ=255)

                    gggATTTTTCTCCGCATATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACttt                                                     >  2:2287894/1‑76 (MQ=255)

                     ggATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACtttt                                                    <  2:50120/76‑1 (MQ=255)

                      gATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTc                                                   >  1:3056602/1‑76 (MQ=255)

                       aTTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                  >  1:753697/1‑76 (MQ=255)

                       aTTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCt                                                  >  1:2628041/1‑76 (MQ=255)

                        tttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGCCTTTTCtc                                                 >  2:107425/1‑75 (MQ=255)

                        tttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTg                                                 <  1:2947104/76‑1 (MQ=255)

                         ttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGc                                                >  2:636611/1‑76 (MQ=255)

                         ttttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGc                                                >  1:1477738/1‑76 (MQ=255)

                          tttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGcc                                               <  1:3502839/76‑1 (MQ=255)

                           ttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCt                                              >  1:4364812/1‑76 (MQ=255)

                           ttCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCt                                              >  1:4380330/1‑76 (MQ=255)

                            tctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                             <  1:2514696/76‑1 (MQ=255)

                            tctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                             >  1:2784157/1‑76 (MQ=255)

                            tctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                             <  2:2841154/76‑1 (MQ=255)

                            tctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                             <  1:4751968/76‑1 (MQ=255)

                            tctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCtt                                             >  2:2416053/1‑76 (MQ=255)

                             ctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCttt                                            <  2:2875105/76‑1 (MQ=255)

                             ctcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCttt                                            <  1:4094259/76‑1 (MQ=255)

                             ctcCGCCTAAGCATTGGGGTTTATTGTCAGTATGCTAGCGATTATCGCCACCGGCGAGGATGACTTCTCTTCCttt                                            >  2:2004567/1‑76 (MQ=255)

                              tcCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTg                                           <  1:3188671/76‑1 (MQ=255)

                               ccGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGc                                          <  2:2547325/76‑1 (MQ=255)

                               ccGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGc                                          <  2:211949/76‑1 (MQ=255)

                               ccGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGc                                          <  2:1991491/76‑1 (MQ=255)

                               ccGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGc                                          <  2:2865962/76‑1 (MQ=255)

                                 gCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGt                                        <  1:1374784/76‑1 (MQ=255)

                                  ccTATGCATTGGTGTTTATTGTCAGTATGCTTTTGCTTATCGCCACTGGCGTGGATGACTTTTCTGCCTTTGCGTc                                       <  1:4684744/76‑1 (MQ=255)

                                  ccTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTc                                       <  1:4040546/76‑1 (MQ=255)

                                   cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCg                                      >  1:232240/1‑76 (MQ=255)

                                   cTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCg                                      <  1:2695782/76‑1 (MQ=255)

                                    tATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTTCCTTTGCGTCgg                                     >  2:1794269/1‑76 (MQ=255)

                                    tATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCgg                                     <  1:1350246/76‑1 (MQ=255)

                                      tGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCgggt                                   >  1:754604/1‑74 (MQ=255)

                                      tGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgtt                                   >  1:3570901/1‑76 (MQ=255)

                                       gCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttg                                  >  2:3953929/1‑76 (MQ=255)

                                       gCATGGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttg                                  <  2:136525/76‑1 (MQ=255)

                                        cATTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgt                                 >  2:3104550/1‑76 (MQ=255)

                                         aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgttgtt                                <  1:3407790/76‑1 (MQ=255)

                                         aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGgctgct                                >  2:3254147/1‑74 (MQ=255)

                                         aTTGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCATTTGCGTCGgttgtt                                <  1:4306875/76‑1 (MQ=255)

                                          ttGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGttgttg                               <  2:1555445/76‑1 (MQ=255)

                                           tGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGc                              >  2:3423633/1‑76 (MQ=255)

                                           tGGTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGCCGTGGCTGACCTTTCTTCCTTTGCGTCGGttggtgg                              >  2:4490917/1‑75 (MQ=255)

                                            ggTGTTTATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCg                             >  2:3581622/1‑76 (MQ=255)

                                            ggTGTGTATTGTCGGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCg                             <  2:4066149/76‑1 (MQ=255)

                                                tttATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACAt                         <  1:1050626/76‑1 (MQ=255)

                                                tttATTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCCTCGGTTGTTGCGACAt                         >  2:4499903/1‑76 (MQ=255)

                                                   aTTGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGa                      <  1:3917827/76‑1 (MQ=255)

                                                    ttGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTgca                     >  2:1643467/1‑74 (MQ=255)

                                                    ttGTCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGaa                     >  1:3079132/1‑76 (MQ=255)

                                                       tCAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATaa                  <  1:1922220/76‑1 (MQ=255)

                                                        cAGTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAc                 <  1:2955797/76‑1 (MQ=255)

                                                          ggaTGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt               <  1:356264/74‑1 (MQ=255)

                                                          gTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt               >  2:1722501/1‑76 (MQ=255)

                                                          gTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCt               <  1:2874294/76‑1 (MQ=255)

                                                          gTATGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAAACt               >  1:1519391/1‑76 (MQ=255)

                                                            aTGCGGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgg             <  1:1837700/76‑1 (MQ=255)

                                                             tGCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGGTGTTTCGGCATTGTATAAACTggg            >  2:3065521/1‑76 (MQ=255)

                                                              gCTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTgggg           >  1:157323/1‑76 (MQ=255)

                                                               cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGc          >  1:2699904/1‑76 (MQ=255)

                                                               cTGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGc          <  2:2024395/76‑1 (MQ=255)

                                                                tGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGcc         >  1:2979052/1‑76 (MQ=255)

                                                                tGGCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGcc         >  2:2312045/1‑76 (MQ=255)

                                                                  gCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATGACCTGGGGCCAg       <  1:2993588/76‑1 (MQ=255)

                                                                  gCGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAg       <  2:4167157/76‑1 (MQ=255)

                                                                   cGATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAgg      <  2:2628041/76‑1 (MQ=255)

                                                                    gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAggg     <  2:3570901/76‑1 (MQ=255)

                                                                    gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAggg     >  1:636478/1‑76 (MQ=255)

                                                                    gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAggg     >  1:3282990/1‑76 (MQ=255)

                                                                    gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAggg     >  1:4338442/1‑76 (MQ=255)

                                                                    gATTATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGGCGGTTGTTGCGACATTGAATAACCTGGGGGCAggg     >  1:2466207/1‑76 (MQ=255)

                                                                      ttATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCt   <  1:1275748/76‑1 (MQ=255)

                                                                       tATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCtt  <  2:2843011/76‑1 (MQ=255)

                                                                       tATCGCCACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCtt  <  1:2416054/76‑1 (MQ=255)

CGTATCCTCGAAGCCGTTTGGGGATTTTTCTCCGCCTATGCATTGGTGTTTATTGTCAGTATGCTGGCGATTATCG‑CACGGGCGTGGATGACTTTTCTGCCTTTGCGTCGGTTGTTGCGACATTGAATAACCTGGGGCCAGGGCTT  >  NC_000913/4031908‑4032053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`